mRNA_H-paniculata_contig17430.4123.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17430.4123.1
Unique NamemRNA_H-paniculata_contig17430.4123.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17430.4123.1 vs. uniprot
Match: D8LSA7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSA7_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 2.240e-72
Identity = 103/124 (83.06%), Postives = 116/124 (93.55%), Query Frame = 1 
Query:    1 DQIKILVSSEDCPAPHFTKWFHYNVQLNAETGVDIDSEDPVEASWGVYDKLVELSSEIRQHSGASVSELKRKYNHLVPSNERVLGLAESDDTIGLSEYLRVYDTPISATLESERVWPIPSVIRY 372
            + +KILVSSEDCPAP+F KWFHYN+QLNAE+ VDID EDPVEASWGVYDKLVEL+SE+RQHSG SVSELKRKYNHLVPSNERVLGLAE++  + LSEYL+VYDTPISATLESERVWPIP++IRY
Sbjct:   63 ENVKILVSSEDCPAPYFAKWFHYNIQLNAESNVDIDKEDPVEASWGVYDKLVELASEMRQHSGTSVSELKRKYNHLVPSNERVLGLAETEKNMSLSEYLQVYDTPISATLESERVWPIPALIRY 186
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BLAST of mRNA_H-paniculata_contig17430.4123.1 vs. uniprot
Match: A0A835YNJ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNJ4_9STRA)

HSP 1 Score: 155 bits (392), Expect = 1.460e-45
Identity = 69/121 (57.02%), Postives = 89/121 (73.55%), Query Frame = 1 
Query:   10 KILVSSEDCPAPHFTKWFHYNVQLNAETGVDIDSEDPVEASWGVYDKLVELSSEIRQHSGASVSELKRKYNHLVPSNERVLGLAESDDTIGLSEYLRVYDTPISATLESERVWPIPSVIRY 372
            ++L + EDCP P+F KWFHY+VQL  + GVD++ EDPVEA+WGV D+L EL++E+    GAS S+LKR+Y HLV SNER   LA +D  + + EYL +YDTPI A LE ERVWP   V+RY
Sbjct:   82 RLLAACEDCPCPYFAKWFHYHVQLMPDAGVDVEREDPVEAAWGVLDRLAELAAEVAAAGGASSSDLKRRYAHLVASNERCAALARADAFMPIGEYLDLYDTPIDAALEGERVWPAQQVVRY 202
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BLAST of mRNA_H-paniculata_contig17430.4123.1 vs. uniprot
Match: A0A6A0A0Z6_HAELA (Uncharacterized protein n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A6A0A0Z6_HAELA)

HSP 1 Score: 63.2 bits (152), Expect = 8.440e-10
Identity = 39/133 (29.32%), Postives = 73/133 (54.89%), Query Frame = 1 
Query:    4 QIKILVSSEDCPAPHFTKWFHYNVQLNAETGVD-IDSEDPVEASWGVYDKLVELSSEIRQHSGA----SVSELKRK------YNHLVPSNERVLGLAESDDTIGLSEYLRVYDTPISATLESERVWPIPSVIR 369
            + +++ S+ED P   F  W  +   +N  T  D ID+ D    S  +     EL++ +R+  G+    + SELKR+      Y   +P+ E ++ L  ++D   + E+L ++D P++  L+SE+VWP+PS+++
Sbjct:   51 EARVVASTEDIPMRCFGAW--HAAFINTATNTDNIDAAD----STTIVKSASELNASMRKLGGSLTDLTESELKRRLAAMDQYCEDLPAPELLMSLVPAEDAPTVEEFLDIFDAPVTVELDSEKVWPMPSMLK 177
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BLAST of mRNA_H-paniculata_contig17430.4123.1 vs. uniprot
Match: A0A024FVY8_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FVY8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 6.020e-7
Identity = 22/49 (44.90%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:  226 LVPSNERVLGLAESDDTIGLSEYLRVYDTPISATLESERVWPIPSVIRY 372
            L+PS+  V  L E DD + LSE+++ +D PIS   ESER+WP+P+++ +
Sbjct:   84 LLPSDSLVAWLLEQDDLMTLSEFIQTFDEPISYCFESERIWPLPTLVPF 132
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BLAST of mRNA_H-paniculata_contig17430.4123.1 vs. uniprot
Match: A0A699YTT2_HAELA (Uncharacterized protein (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YTT2_HAELA)

HSP 1 Score: 51.2 bits (121), Expect = 4.820e-5
Identity = 26/81 (32.10%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:  157 ELSSEIRQHSGA----SVSELKRK------YNHLVPSNERVLGLAESDDTIGLSEYLRVYDTPISATLESERVWPIPSVIR 369
            EL++ +R+  G     + SELKR+      Y   +P+ E ++ L  ++D   + E+L ++D P++  L+SE+VWP+PS+++
Sbjct:  178 ELNASMRKLGGTLTDLTESELKRRLAAMDQYCEDLPAPELLMSLVPAEDAPTVEEFLDIFDAPVTVELDSEKVWPMPSMLK 258
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17430.4123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LSA7_ECTSI2.240e-7283.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YNJ4_9STRA1.460e-4557.02Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6A0A0Z6_HAELA8.440e-1029.32Uncharacterized protein n=1 Tax=Haematococcus lacu... [more]
A0A024FVY8_9STRA6.020e-744.90Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A699YTT2_HAELA4.820e-532.10Uncharacterized protein (Fragment) n=1 Tax=Haemato... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17430contigH-paniculata_contig17430:989..2223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score68.9
Seed ortholog evalue1.9e-09
Seed eggNOG ortholog3055.EDP09862
Hectar predicted targeting categoryother localisation
EggNOG OGs2CRP4@1,2R8N0@2759,34NPA@3041,381SB@33090
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-12_004220.1
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons3
Model size375
Cds size375
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17430.4123.1prot_H-paniculata_contig17430.4123.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17430 989..2223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929370.7578485-CDS-H-paniculata_contig17430:988..11341622929370.7578485-CDS-H-paniculata_contig17430:988..1134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17430 989..1134 +
1691480834.1901176-CDS-H-paniculata_contig17430:988..11341691480834.1901176-CDS-H-paniculata_contig17430:988..1134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17430 989..1134 +
1622929370.7758958-CDS-H-paniculata_contig17430:1474..16191622929370.7758958-CDS-H-paniculata_contig17430:1474..1619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17430 1475..1619 +
1691480834.2021773-CDS-H-paniculata_contig17430:1474..16191691480834.2021773-CDS-H-paniculata_contig17430:1474..1619Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17430 1475..1619 +
1622929370.789572-CDS-H-paniculata_contig17430:2139..22231622929370.789572-CDS-H-paniculata_contig17430:2139..2223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17430 2140..2223 +
1691480834.2127395-CDS-H-paniculata_contig17430:2139..22231691480834.2127395-CDS-H-paniculata_contig17430:2139..2223Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17430 2140..2223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17430.4123.1

>prot_H-paniculata_contig17430.4123.1 ID=prot_H-paniculata_contig17430.4123.1|Name=mRNA_H-paniculata_contig17430.4123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=125bp
DQIKILVSSEDCPAPHFTKWFHYNVQLNAETGVDIDSEDPVEASWGVYDK
LVELSSEIRQHSGASVSELKRKYNHLVPSNERVLGLAESDDTIGLSEYLR
VYDTPISATLESERVWPIPSVIRY*
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mRNA from alignment at H-paniculata_contig17430:989..2223+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17430.4123.1 ID=mRNA_H-paniculata_contig17430.4123.1|Name=mRNA_H-paniculata_contig17430.4123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1235bp|location=Sequence derived from alignment at H-paniculata_contig17430:989..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCAGATAAAAATTTTAGTGTCGAGCGAGGATTGCCCTGCCCCACACTT
CACTAAGTGGTTCCACTACAATGTACAACTAAACGCGGAGACCGGCGTAG
ATATCGACAGCGAGGATCCAGTTGAGGCATCCTGGGGAGTATATGAGTAA
GTGTACTAAATATTATCGGTCAATCAAGTCTGTCACCTGTAGCAGTGTCT
GACATTGATTGCTTCCACAATCTAGGCTCAACCTTTGAATCTCAATAATG
CACCTCCCGAGTGAGTCGTCTGGTAAGCACACACGAAAGGGCCTTCATTT
CCCTCGTTCGAGTCTTCGAGGCGCATCTTGACAAGTTGATATTTATCGCA
CCACTCAGCCTCTCCGTCGGCGAATACATCATCGACTAAAAAAGCGCAAG
CTTCAAACGTGTTTTCTCGTGAATAGTAACTAAAGCCCCGTCCCGATTCA
CCCCCATCATGCTCCACCCATATTCGTGGGATGCAGCAAGTTGGTGGAAC
TATCCTCCGAGATACGTCAGCACTCTGGCGCGTCTGTCTCGGAGCTAAAG
CGCAAGTACAACCACTTAGTTCCTTCAAACGAAAGGGTGCTAGGGTTAGC
AGAGTCAGATGACACGATTGGATTGTCAGAGGTGAGAAACGAAAAGAGAA
CTTGCGACAGCAGTAGAAAATGCAAACAGATTTGTGAAAGCCCTGGGAGA
AAATGGCTCCCGATAGGATCACACGTGGCCAGAGGGGTACCTTGTTGCGG
ACATTGCAACGTCCACGCTGTGGTGAGGTTGGCAGTGTTTACACAACGTA
GTAGGACGTTGTTGTGAGGTTGACAATGTCCTTACAATCTCCTTAGACCT
TTTGTGCACGTTGTCAACCTCACGCAACGTGGGGACGTCATAATATCCAC
AAGATCCTCACAACGTACCCTCTCGCCACGTGTACTACAGCAAGTCAATA
GAACAACAGCTGTAGCTCAATTTCGGGGACACGGACTTGACAGCCTTGGG
GAGTGAAATTTTGTTAGTGCTTGGGTCCTTTACAGTCTTCCCGTGATACG
CGTTTTCTCGCTATTCGTTGATACCAGGTGAACGTTCCGTACCAATGCTT
CCTGTAACGCCCATCTCTGTCGGAAACCGTTTGTTGAAAATTCCTTCGCA
GTATCTACGAGTATACGACACACCGATCTCAGCCACGTTGGAATCGGAGC
GCGTATGGCCAATACCCTCCGTGATAAGATACTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17430:989..2223+

>mRNA_H-paniculata_contig17430.4123.1 ID=mRNA_H-paniculata_contig17430.4123.1|Name=mRNA_H-paniculata_contig17430.4123.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at H-paniculata_contig17430:989..2223+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACCAGATAAAAATTTTAGTGTCGAGCGAGGATTGCCCTGCCCCACACTT
CACTAAGTGGTTCCACTACAATGTACAACTAAACGCGGAGACCGGCGTAG
ATATCGACAGCGAGGATCCAGTTGAGGCATCCTGGGGAGTATATGAGACC
AGATAAAAATTTTAGTGTCGAGCGAGGATTGCCCTGCCCCACACTTCACT
AAGTGGTTCCACTACAATGTACAACTAAACGCGGAGACCGGCGTAGATAT
CGACAGCGAGGATCCAGTTGAGGCATCCTGGGGAGTATATGACAAGTTGG
TGGAACTATCCTCCGAGATACGTCAGCACTCTGGCGCGTCTGTCTCGGAG
CTAAAGCGCAAGTACAACCACTTAGTTCCTTCAAACGAAAGGGTGCTAGG
GTTAGCAGAGTCAGATGACACGATTGGATTGTCAGAGCAAGTTGGTGGAA
CTATCCTCCGAGATACGTCAGCACTCTGGCGCGTCTGTCTCGGAGCTAAA
GCGCAAGTACAACCACTTAGTTCCTTCAAACGAAAGGGTGCTAGGGTTAG
CAGAGTCAGATGACACGATTGGATTGTCAGAGTATCTACGAGTATACGAC
ACACCGATCTCAGCCACGTTGGAATCGGAGCGCGTATGGCCAATACCCTC
CGTGATAAGATACTGATATCTACGAGTATACGACACACCGATCTCAGCCA
CGTTGGAATCGGAGCGCGTATGGCCAATACCCTCCGTGATAAGATACTGA
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