mRNA_H-paniculata_contig17427.4121.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17427.4121.1
Unique NamemRNA_H-paniculata_contig17427.4121.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: A0A6H5JGP3_9PHAE (EDR2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGP3_9PHAE)

HSP 1 Score: 144 bits (363), Expect = 7.670e-43
Identity = 68/82 (82.93%), Postives = 76/82 (92.68%), Query Frame = 1
Query:    4 NDIRNRRLKMFPNVLQGPWVVRKAVGKPFIVGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQV 249
            NDIRNRRLK+FP VL+GPWVVRKAVGKP ++G++L  RYFRRPGYFEVDIDVGSS LAS ATHLAGGYAK++VLDLAFALQV
Sbjct:   24 NDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQV 105          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: D8LI57_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI57_ECTSI)

HSP 1 Score: 142 bits (359), Expect = 1.280e-37
Identity = 67/81 (82.72%), Postives = 75/81 (92.59%), Query Frame = 1
Query:    4 NDIRNRRLKMFPNVLQGPWVVRKAVGKPFIVGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQ 246
            NDIRNRRLK+FP VL+GPWVVRKAVGKP ++G++L  RYFRRPGYFEVDIDVGSS LAS ATHLAGGYAK++VLDLAFALQ
Sbjct: 1752 NDIRNRRLKLFPKVLEGPWVVRKAVGKPCVIGKKLTARYFRRPGYFEVDIDVGSSTLASNATHLAGGYAKNLVLDLAFALQ 1832          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: A0A6H5JHL0_9PHAE (EDR2_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL0_9PHAE)

HSP 1 Score: 97.4 bits (241), Expect = 3.700e-23
Identity = 45/85 (52.94%), Postives = 62/85 (72.94%), Query Frame = 1
Query:    4 NDIRNRRLKMFPNVLQGPWVVRKAVG-KPFIVGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQVMK 255
            +D+RN R K+FP +L+GPW+VRKAVG KP ++ ++L  RYFR   YFEVDID+GSS +A     LA GYAK + +D+ F +QV +
Sbjct:  125 DDLRNMRFKLFPAILEGPWIVRKAVGSKPTLIAQKLTCRYFRTRSYFEVDIDIGSSVVAYNTVSLAIGYAKSLCVDMGFCIQVSR 209          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: A0A7S0GW50_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0GW50_MICPS)

HSP 1 Score: 85.5 bits (210), Expect = 1.610e-17
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query:    7 DIRNRRLKMFPNVLQGPWVVRKAVG-KPFIVGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQ 246
            + R+ RLK+ P+V  GPWVV++AVG KP IVG+ L+VRY  RP + EVDID+GSSA+A+       GY + +V+D+ F ++
Sbjct:  450 EYRDARLKLIPHVALGPWVVQRAVGTKPLIVGKALKVRYHSRPNFLEVDIDIGSSAVANNVVRFVLGYVRTLVVDMCFLVE 530          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: D8T7H8_SELML (EDR2_C domain-containing protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8T7H8_SELML)

HSP 1 Score: 84.0 bits (206), Expect = 3.060e-17
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 NDIRNRRLKMFPNVLQGPWVVRKAVGK--PFIVGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQ 246
            ++ RN R K+   +++GPW+VR AVG     ++GR L  RY+R P Y E+D+D+GSS +ASY  HLA GY   V +D+AF ++
Sbjct:  173 DEFRNGRFKLINRIVKGPWIVRAAVGNHAACLLGRALTCRYWRGPNYLEIDVDIGSSTVASYILHLALGYVNSVSVDMAFLVE 255          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: A0A7S2FI89_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI89_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.240e-17
Identity = 38/69 (55.07%), Postives = 52/69 (75.36%), Query Frame = 1
Query:   43 VLQGPWVVRKAVG-KPFIVGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQ 246
            +++GPW+VR AV  KP ++GR+L+ RYFR  GY E DI +GSSA+A+  T L  GYAK +V+DLAF L+
Sbjct:    2 IIEGPWIVRSAVPVKPALMGRKLKQRYFRGEGYVETDIHIGSSAIANNITGLCRGYAKAMVVDLAFCLE 70          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: A0A2C9V1Y5_MANES (EDR2_C domain-containing protein n=2 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9V1Y5_MANES)

HSP 1 Score: 83.2 bits (204), Expect = 4.110e-17
Identity = 40/83 (48.19%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 NDIRNRRLKMFPNVLQGPWVVRKAVGKPF--IVGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQ 246
            +  RN RLK+  N+++GPW+VRKAVG+    I+GR L  RY     +FEVD+D+GSS +AS   HLA GY   + +DLAF ++
Sbjct:  143 DGFRNSRLKLIANIVKGPWIVRKAVGEQAVCIIGRALTCRYCVAENFFEVDVDIGSSVVASAIVHLAFGYITMLTVDLAFVIE 225          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: A0A5K1BKJ8_9MAGN (EDR2_C domain-containing protein (Fragment) n=2 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1BKJ8_9MAGN)

HSP 1 Score: 83.6 bits (205), Expect = 4.460e-17
Identity = 38/83 (45.78%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    4 NDIRNRRLKMFPNVLQGPWVVRKAVGK--PFIVGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQ 246
            ++ RN R K+   +++GPW+VR AVG     ++GR LQ+RY R P Y E+D+D+GSSALA+   HLA GY   V +D+ F ++
Sbjct:  202 DEFRNARFKIVNRIVRGPWIVRAAVGNYAACLLGRALQIRYVRGPNYLEIDVDIGSSALANAILHLALGYVTTVTIDMGFLVE 284          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: A0A444Y8L5_ARAHY (EDR2_C domain-containing protein n=2 Tax=Arachis TaxID=3817 RepID=A0A444Y8L5_ARAHY)

HSP 1 Score: 82.8 bits (203), Expect = 5.720e-17
Identity = 40/83 (48.19%), Postives = 55/83 (66.27%), Query Frame = 1
Query:    4 NDIRNRRLKMFPNVLQGPWVVRKAVGKPFI--VGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQ 246
            N  RN RLK+  N+++GPW+VRKAVG+  I  +GR L  +Y     + EVDID+GSS +AS   HLA GY   + +DLAF ++
Sbjct:  140 NGFRNSRLKLIANIVRGPWIVRKAVGEQAICIIGRALHCKYCSGENFMEVDIDIGSSMVASAIVHLAFGYISSLTVDLAFLIE 222          
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Match: A0A6P8EIT7_PUNGR (protein ENHANCED DISEASE RESISTANCE 2-like isoform X1 n=3 Tax=Punica granatum TaxID=22663 RepID=A0A6P8EIT7_PUNGR)

HSP 1 Score: 82.8 bits (203), Expect = 6.700e-17
Identity = 39/83 (46.99%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    4 NDIRNRRLKMFPNVLQGPWVVRKAVGKPFI--VGRRLQVRYFRRPGYFEVDIDVGSSALASYATHLAGGYAKHVVLDLAFALQ 246
            +  RN RLK+  N+++GPW+V+KAVG+  I  +GR L  +YF+   + EVDID+GSS +AS   HLA GY   + +DLAF ++
Sbjct:  156 DGFRNSRLKLIANIVKGPWIVKKAVGEQAICIIGRALTCKYFKADKFLEVDIDIGSSMMASAIVHLAFGYITTLTVDLAFLIE 238          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17427.4121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGP3_9PHAE7.670e-4382.93EDR2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LI57_ECTSI1.280e-3782.72CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JHL0_9PHAE3.700e-2352.94EDR2_C domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A7S0GW50_MICPS1.610e-1749.38Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
D8T7H8_SELML3.060e-1745.78EDR2_C domain-containing protein n=3 Tax=Selaginel... [more]
A0A7S2FI89_9STRA3.240e-1755.07Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2C9V1Y5_MANES4.110e-1748.19EDR2_C domain-containing protein n=2 Tax=Manihot e... [more]
A0A5K1BKJ8_9MAGN4.460e-1745.78EDR2_C domain-containing protein (Fragment) n=2 Ta... [more]
A0A444Y8L5_ARAHY5.720e-1748.19EDR2_C domain-containing protein n=2 Tax=Arachis T... [more]
A0A6P8EIT7_PUNGR6.700e-1746.99protein ENHANCED DISEASE RESISTANCE 2-like isoform... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17427contigH-paniculata_contig17427:4696..5324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score127.1
Seed ortholog evalue3.6e-27
Seed eggNOG ortholog2880.D8LI57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.macromolecule localization
EggNOG OGsKOG1471@1,KOG1471@2759
Ec32 ortholog descriptionCRAL/TRIO, N-terminal domain
Ec32 orthologEc-26_005300.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size264
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17427.4121.1prot_H-paniculata_contig17427.4121.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17427 4696..5294 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929370.2670977-CDS-H-paniculata_contig17427:4695..48311622929370.2670977-CDS-H-paniculata_contig17427:4695..4831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17427 4696..4831 -
1691480833.9572523-CDS-H-paniculata_contig17427:4695..48311691480833.9572523-CDS-H-paniculata_contig17427:4695..4831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17427 4696..4831 -
1622929370.2843533-CDS-H-paniculata_contig17427:5196..52941622929370.2843533-CDS-H-paniculata_contig17427:5196..5294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17427 5197..5294 -
1691480833.9702997-CDS-H-paniculata_contig17427:5196..52941691480833.9702997-CDS-H-paniculata_contig17427:5196..5294Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17427 5197..5294 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929370.3194714-UTR-H-paniculata_contig17427:5294..53241622929370.3194714-UTR-H-paniculata_contig17427:5294..5324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17427 5295..5324 -
1691480833.980406-UTR-H-paniculata_contig17427:5294..53241691480833.980406-UTR-H-paniculata_contig17427:5294..5324Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17427 5295..5324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17427.4121.1

>prot_H-paniculata_contig17427.4121.1 ID=prot_H-paniculata_contig17427.4121.1|Name=mRNA_H-paniculata_contig17427.4121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
MFPNVLQGPWVVRKAVGKPFIVGRRLQVRYFRRPGYFEVDIDVGSSALAS
YATHLAGGYAKHVVLDLAFALQVMKLQ*
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mRNA from alignment at H-paniculata_contig17427:4696..5324-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17427.4121.1 ID=mRNA_H-paniculata_contig17427.4121.1|Name=mRNA_H-paniculata_contig17427.4121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=629bp|location=Sequence derived from alignment at H-paniculata_contig17427:4696..5324- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACGAATGACATCAGAAACCGACGGCTAAAGATGTTCCCCAACGTGCTCCA GGGGCCTTGGGTGGTGCGAAAGGCGGTAGGGAAGCCATTCATCGTTGGTC GACGGCTGCAAGTTCGGTACTTCCGGAGGTGATATTTTGTCGTTATTACT GCAAAAATGATACACAAAGTAAAAAGCTTGTATGTGTAAAGAGGCATATA TAATATACATGTCGTTGTTTTTTTATGGGGCGATGATAGGGGAGGGATAT TACTTTCTATTTCAGTTGCTGTAATTTTTAGACAGTGTAAATTACGACGA AAAAGTTTCGAGAATTAAGTATGACTGAAATTGTTCATAGATGCAGTCTG TGTGTTTAGTCTGTCTTTGATTGGTTGTTCGATGGATTGACTACTCTATC TTTACATTTAAATATATGCATGACGAGTAGATGTCTCATGTACAACATGC CGACCTTCCTTCGTAAACCAAACTCGACGTTCAACCGTTTTAGGCCGGGG TATTTTGAGGTGGACATTGACGTAGGCTCCAGCGCGCTCGCGAGTTACGC TACGCATCTCGCGGGTGGGTACGCCAAGCACGTGGTGCTCGATCTGGCCT TCGCGTTGCAGGTAATGAAACTCCAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17427:4696..5324-

>mRNA_H-paniculata_contig17427.4121.1 ID=mRNA_H-paniculata_contig17427.4121.1|Name=mRNA_H-paniculata_contig17427.4121.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig17427:4696..5324- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTCCCCAACGTGCTCCAGGGGCCTTGGGTGGTGCGAAAGGCGGTAGG
GAAGCCATTCATCGTTGGTCGACGGCTGCAAGTTCGGTACTTCCGGAGAT
GTTCCCCAACGTGCTCCAGGGGCCTTGGGTGGTGCGAAAGGCGGTAGGGA
AGCCATTCATCGTTGGTCGACGGCTGCAAGTTCGGTACTTCCGGAGGCCG
GGGTATTTTGAGGTGGACATTGACGTAGGCTCCAGCGCGCTCGCGAGTTA
CGCTACGCATCTCGCGGGTGGGTACGCCAAGCACGTGGTGCTCGATCTGG
CCTTCGCGTTGCAGGTAATGAAACTCCAGTGAGCCGGGGTATTTTGAGGT
GGACATTGACGTAGGCTCCAGCGCGCTCGCGAGTTACGCTACGCATCTCG
CGGGTGGGTACGCCAAGCACGTGGTGCTCGATCTGGCCTTCGCGTTGCAG
GTAATGAAACTCCAGTGA
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