mRNA_H-paniculata_contig17424.4120.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17424.4120.1
Unique NamemRNA_H-paniculata_contig17424.4120.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: D7FXL6_ECTSI (DNA-damage-inducible protein f, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXL6_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 4.740e-24
Identity = 54/70 (77.14%), Postives = 61/70 (87.14%), Query Frame = 2 
Query:    2 SRAMIMELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLAQVCKEYAA 211
            +  M+ ELV FTLPLL+VWLSNPIMSLVDTAVVGA+SS+ELAALGPGTSVCDN+AY+CGFLAQV     A
Sbjct:  349 NLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAQSSVELAALGPGTSVCDNLAYMCGFLAQVTTNLGA 418
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: A0A6H5L6W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6W0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 3.040e-23
Identity = 52/63 (82.54%), Postives = 59/63 (93.65%), Query Frame = 2 
Query:    2 SRAMIMELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLAQ 190
            +  M+ ELV FTLPLL+VWLSNPIMSLVDTAVVGA+SS+ELAALGPGTSVCDN+AY+CGFLAQ
Sbjct:  340 NLGMVTELVAFTLPLLVVWLSNPIMSLVDTAVVGAQSSVELAALGPGTSVCDNLAYMCGFLAQ 402
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: A0A835ZMN7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMN7_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 2.350e-14
Identity = 47/106 (44.34%), Postives = 65/106 (61.32%), Query Frame = 2 
Query:   20 ELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLAQVCKEYAARICM------PCVFHACF*LLADARLRCDFHDVSHCLTQHPL 319
            ELV FTLPLL++WLSNP+MSL+DT+VVG +S  +LAALGPGTSVCDN++  C  +  V ++Y  ++ +      PC  +    LL D  +     +       HPL
Sbjct:  136 ELVKFTLPLLVIWLSNPVMSLIDTSVVGKRSLTQLAALGPGTSVCDNIS--CKRVRSV-RQYFMQVLLCIYISTPCGVNGDGALLTDTTITAPSRNPLSPTAHHPL 238
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: UPI0011D27C37 (protein DETOXIFICATION 47, chloroplastic-like n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D27C37)

HSP 1 Score: 72.0 bits (175), Expect = 2.400e-12
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 2 
Query:   14 IMELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLA-----QVCKEYAARICMPC 229
            I+E+V F+ P   +W+  P+MSL+DTAV+G  SS+ELAALGPGT +CDN++YV  FL+      V    A R+  PC
Sbjct:  112 IVEIVKFSGPATGLWICGPLMSLIDTAVIGQGSSIELAALGPGTVLCDNMSYVFMFLSIATTNMVATSLARRVSPPC 188
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: A0A8J2WS84_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WS84_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 6.530e-12
Identity = 37/66 (56.06%), Postives = 48/66 (72.73%), Query Frame = 2 
Query:   20 ELVGFTLPLLIVWLSNPIMSLVDTAVVGA-KSSLELAALGPGTSVCDNVAYVCGFLAQVCKEYAAR 214
            EL GFTLPLL+VWL++P++SLVDTA VGA + + ELA LGP  + CDN A++C FL  V     +R
Sbjct:  189 ELAGFTLPLLLVWLASPLLSLVDTAAVGASRPTAELAVLGPACAACDNAAFLCTFLGIVTTGAVSR 254
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: A0A8J9WM82_9CHLO (Protein DETOXIFICATION 46, chloroplastic n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WM82_9CHLO)

HSP 1 Score: 72.8 bits (177), Expect = 1.190e-11
Identity = 36/64 (56.25%), Postives = 46/64 (71.88%), Query Frame = 2 
Query:   20 ELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLAQVCKEYAA 211
            EL+ FTLP L +W+ NP++SLVDT+VVG +S+ ELAALGPGT +CD  AY+  FLA       A
Sbjct:  162 ELLRFTLPTLGIWIINPVLSLVDTSVVGTRSARELAALGPGTMLCDGNAYIFTFLAAATTNMLA 225
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: B9RHB7_RICCO (Protein DETOXIFICATION n=2 Tax=Ricinus communis TaxID=3988 RepID=B9RHB7_RICCO)

HSP 1 Score: 70.9 bits (172), Expect = 5.410e-11
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:   14 IMELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLA 187
            I E+V FT P   +W++ P+MSL+DTAV+G  SSLELAALGPGT +CDN++YV  FL+
Sbjct:  123 IKEIVMFTAPATGLWITGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLS 180
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: A0A6A6NDH8_HEVBR (Uncharacterized protein n=3 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6NDH8_HEVBR)

HSP 1 Score: 70.5 bits (171), Expect = 7.000e-11
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 2 
Query:   14 IMELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLA 187
            I E+V FT P   +W+  P+MSL+DTAV+G  SSLELAALGPGT +CDN++YV  FL+
Sbjct:  117 IKEIVKFTAPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLS 174
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: A0A8B8NKT1_9MYRT (Protein DETOXIFICATION n=2 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8NKT1_9MYRT)

HSP 1 Score: 70.5 bits (171), Expect = 7.300e-11
Identity = 35/58 (60.34%), Postives = 46/58 (79.31%), Query Frame = 2 
Query:   14 IMELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLA 187
            IME+V F+ P   +W+  P+MSL+DTAV+G  SS+ELAALGPGT +CDNV+YV  FL+
Sbjct:  112 IMEIVKFSGPATGLWICGPLMSLIDTAVIGQGSSIELAALGPGTVLCDNVSYVFMFLS 169
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BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Match: A0A2C9UZW6_MANES (Protein DETOXIFICATION n=1 Tax=Manihot esculenta TaxID=3983 RepID=A0A2C9UZW6_MANES)

HSP 1 Score: 70.5 bits (171), Expect = 7.310e-11
Identity = 35/58 (60.34%), Postives = 45/58 (77.59%), Query Frame = 2 
Query:   14 IMELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDNVAYVCGFLA 187
            I E+V FT P   +W+  P+MSL+DTAV+G  SSLELAALGPGT +CDN++YV  FL+
Sbjct:  117 IKEIVKFTAPATGLWICGPLMSLIDTAVIGQGSSLELAALGPGTVLCDNMSYVFMFLS 174
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17424.4120.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXL6_ECTSI4.740e-2477.14DNA-damage-inducible protein f, putative n=1 Tax=E... [more]
A0A6H5L6W0_9PHAE3.040e-2382.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZMN7_9STRA2.350e-1444.34Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
UPI0011D27C372.400e-1249.35protein DETOXIFICATION 47, chloroplastic-like n=1 ... [more]
A0A8J2WS84_9STRA6.530e-1256.06Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J9WM82_9CHLO1.190e-1156.25Protein DETOXIFICATION 46, chloroplastic n=1 Tax=C... [more]
B9RHB7_RICCO5.410e-1160.34Protein DETOXIFICATION n=2 Tax=Ricinus communis Ta... [more]
A0A6A6NDH8_HEVBR7.000e-1160.34Uncharacterized protein n=3 Tax=Hevea brasiliensis... [more]
A0A8B8NKT1_9MYRT7.300e-1160.34Protein DETOXIFICATION n=2 Tax=Rhodamnia argentea ... [more]
A0A2C9UZW6_MANES7.310e-1160.34Protein DETOXIFICATION n=1 Tax=Manihot esculenta T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17424contigH-paniculata_contig17424:1049..3803 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.8
Seed ortholog evalue2.3e-21
Seed eggNOG ortholog2880.D7FXL6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.antiporter activity
EggNOG OGsCOG0534@1,KOG1347@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size563
Cds size240
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17424.4120.1prot_H-paniculata_contig17424.4120.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17424 1059..3490 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929370.162713-UTR-H-paniculata_contig17424:1048..10581622929370.162713-UTR-H-paniculata_contig17424:1048..1058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17424 1049..1058 +
1691480833.9067812-UTR-H-paniculata_contig17424:1048..10581691480833.9067812-UTR-H-paniculata_contig17424:1048..1058Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17424 1049..1058 +
1622929370.2183418-UTR-H-paniculata_contig17424:3490..38031622929370.2183418-UTR-H-paniculata_contig17424:3490..3803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17424 3491..3803 +
1691480833.9435-UTR-H-paniculata_contig17424:3490..38031691480833.9435-UTR-H-paniculata_contig17424:3490..3803Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17424 3491..3803 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929370.186102-CDS-H-paniculata_contig17424:1058..11051622929370.186102-CDS-H-paniculata_contig17424:1058..1105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17424 1059..1105 +
1691480833.925258-CDS-H-paniculata_contig17424:1058..11051691480833.925258-CDS-H-paniculata_contig17424:1058..1105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17424 1059..1105 +
1622929370.201436-CDS-H-paniculata_contig17424:3297..34901622929370.201436-CDS-H-paniculata_contig17424:3297..3490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17424 3298..3490 +
1691480833.9339178-CDS-H-paniculata_contig17424:3297..34901691480833.9339178-CDS-H-paniculata_contig17424:3297..3490Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17424 3298..3490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17424.4120.1

>prot_H-paniculata_contig17424.4120.1 ID=prot_H-paniculata_contig17424.4120.1|Name=mRNA_H-paniculata_contig17424.4120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MIMELVGFTLPLLIVWLSNPIMSLVDTAVVGAKSSLELAALGPGTSVCDN
VAYVCGFLAQVCKEYAARICMPCVFHACF*
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mRNA from alignment at H-paniculata_contig17424:1049..3803+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17424.4120.1 ID=mRNA_H-paniculata_contig17424.4120.1|Name=mRNA_H-paniculata_contig17424.4120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2755bp|location=Sequence derived from alignment at H-paniculata_contig17424:1049..3803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCACGAGCGATGATCATGGAGCTCGTGGGGTTCACGCTGCCTCTGCTGA
TCGTCTGGTAAGTCTCGGGAGAGCTACACACCGCCGCCGGTCCTATAGAC
ATTACTGGATAGTACTTGGTTGAATATCGGCATCACCTCGGAAGGTCATT
TTCTAATTTCGACACTTGGAGTGAACCACTGGTACACTAAATATGTCCTG
CTCCATTATCCTATCTTACATATCTTCACATTAGACATCATGCACAGTAA
CTGGAACCACATTCTTGAGCACTGTCCGCGTGGTGCCAGCACACTACTGA
GTGATGATACGTGTGGGAGGGTACAGGTACATATGCAGTCAACATAGCCT
TGAAAAATTGGACGTTTGGTTTTTCAAGCGTCGAAGAAATTTCGCCAGCA
AACAAACTCTGCTAAAATTGTGACCTTGCTCTAGTTCCAACCATGGAGCT
TTATAAATACACACATATAAATATACATACTTCCTCTGTCTCACAATTAT
ACTCAGCTATGATTACAGAGGCTCTTAAATAATCTCCGACTTATTCATAA
ATATATATACATTTGATAGAATTCTACATGTTTTCGGGTTTCAAGTCCAA
TTGTTTGGGTGAAACAATTGACTTTTAACACCAAAGCACGCGCCGTAAAA
AAAAAAACTACGCGGCCGAGAAAAGGCCCCTTTAGGAGTTTTGGTATTGT
CCCACAAGTACAGTATGTCGTGATTAGAGACGCACTTCAAGTATCTCCGC
ATTTTTTACTTGAAAATAAATGAGAATGTTACATGTTTTGGGAGGTTCGA
CCCAAAATATTGGGTCGAATAGTTGAACTTTTACGCCGTGAAAAATAGCA
CTCGGGCGAAAAACGCCAAAGAGTGCACGTTTGTTTTTTGAGTTCTATGG
AAAGAAGTTCCCAAAAAAGGGCCTTTTTCCGGCCGAGCGCTTTTTTTTCA
TGGGCGTGTCTTTTGTGTTTTGGTGTTGAAAGTCAAGTGGTTGACCCAAA
AATTTGAGTTTCAACCCAAAATTCGTGTAGAATTCAGTTTACATAAAAAA
AAGTCGGAGATGTTTAAGTGCCTCTATAATCATAACTGAGTATACTTGTG
AGACAGAGGAAGTATATATATATAGTTATATGTACATGTATAAGCCATGA
ATTTGCATATGAGCCGTGAGGTTCATCCCAAAAATGCGATTATTGAGTGC
TCTCGTGTACTGTAGAAGGATGAAAAGTGGTGCAAACGTCAAAGTTGTTC
AGTGCTACGTACGTCTAGTAAGACATGCGCCTTAGGCGGAAAGGCGTGGA
GATCTCAAACTCCGGGATGCATTTTCTCGTGTGTGTGTGTGTGTGTGTGC
GATACTTTGTGCTTTCTATTGGCGGTGTCTCTTCGACGCTTGGCGAGCCT
GGTGTTACTGTCGTGTGTCTCGCCTGGGGTTTTCAAAGCTGCATTGTTTG
TATTCATTATAACCCGTCTACAATAACAAGAAGTACTGGCCCGCTCAATA
GAGTCACGCTTAAGAAAAGTTTAGCCTGAGTTAGGTTTTTCCTTGCTCTG
CCGAAACAAGAGACACAACCTCAGTCAGTTCGTCCGGTTCTCATCAGCAG
ATTGGTATACTGTTTGTAGCGCAGAAGCAATTCGTACCTCCAGATGTAGC
ATGAGGCTTGCTTCGAGAAGGAGACGTTGTCCTGCGCCGCCTGATACACT
CACATGTGTCTTTGCTCACACATGGATCAATTTCACCTCACCTCCCCAAC
TACAGTATGGCGTCTTCTCATAAATTCGATGTCGACCGTTTGTGTGCACT
GTAGCCATCCTACGGTAGGGGGGCTCAATTGTTTAACGAAGGCCGCTTCG
CAAAAAAGCGGTGTAAAAGCAACGCGAGTCAAAACCATGTCAATTGCATA
TGTTTGTGTATGCATCGTTCTCTGTTTTTTACTTTCTGAGATGTTCGTTC
TTGGATTTTGTTTTTTGGGGTAAAATGGAAAATAGGTTGCATTAGACCTC
GGGACGCACCTCATCCAAGTTTTTTTTTTGGCAGCCAGATTTGCATATGG
GCACTCCTTTGAAACGCCCGAAAAAGTGCTAATAATCAACACGAATCGGA
TGTACATCGTGAATCATGTTTCGAAAATTTACTGCGTCCCAAAGGGGTTA
ATACACACCTATCATGCTCCGGCTAATTAGTGTACTATTGACTATTGATT
GTTAACACATCTCGCGTTACCCTCGTGTTGTTCGTCTGTGTGTTTCCAGG
CTTTCCAATCCCATCATGTCTCTGGTAGACACGGCTGTGGTCGGAGCGAA
GAGCTCGTTGGAACTTGCAGCCCTGGGCCCGGGCACCTCGGTTTGTGATA
ACGTGGCTTACGTGTGCGGCTTTCTTGCTCAGGTTTGCAAGGAATATGCT
GCACGTATTTGCATGCCATGTGTTTTTCACGCTTGCTTTTAACTGCTGGC
TGATGCGCGTCTTAGATGTGATTTTCACGATGTGAGTCATTGTCTAACGC
AACACCCTTTGATATTGCACCCACTGACATTATTTTTCAAGTCTATTTTC
TCGATGACTACGGTGATCATGACACCGATAATAGCGGTATCGTTGGAAAT
ATTTCGTTGAGATATTCCGATAGACCTGCTGACTCGGTAGTACAGGCTCT
TGCCCGCTTCTCCAGAAAATCGGGTTTGGAAAATAGTATTAGGTTGTGCG
ATATTAAAGGGTGTTACGGTATATGAAGGAATCCTTGTTCTTTACTAATA
TCGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17424:1049..3803+

>mRNA_H-paniculata_contig17424.4120.1 ID=mRNA_H-paniculata_contig17424.4120.1|Name=mRNA_H-paniculata_contig17424.4120.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig17424:1049..3803+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATCATGGAGCTCGTGGGGTTCACGCTGCCTCTGCTGATCGTCTGATG
ATCATGGAGCTCGTGGGGTTCACGCTGCCTCTGCTGATCGTCTGGCTTTC
CAATCCCATCATGTCTCTGGTAGACACGGCTGTGGTCGGAGCGAAGAGCT
CGTTGGAACTTGCAGCCCTGGGCCCGGGCACCTCGGTTTGTGATAACGTG
GCTTACGTGTGCGGCTTTCTTGCTCAGGTTTGCAAGGAATATGCTGCACG
TATTTGCATGCCATGTGTTTTTCACGCTTGCTTTTAAGCTTTCCAATCCC
ATCATGTCTCTGGTAGACACGGCTGTGGTCGGAGCGAAGAGCTCGTTGGA
ACTTGCAGCCCTGGGCCCGGGCACCTCGGTTTGTGATAACGTGGCTTACG
TGTGCGGCTTTCTTGCTCAGGTTTGCAAGGAATATGCTGCACGTATTTGC
ATGCCATGTGTTTTTCACGCTTGCTTTTAA
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