mRNA_H-paniculata_contig1742.4117.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: D8LAW0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW0_ECTSI) HSP 1 Score: 157 bits (396), Expect = 2.440e-43 Identity = 83/177 (46.89%), Postives = 112/177 (63.28%), Query Frame = 1
Query: 160 IEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTRGFNYDRVMMVDIGDTLFQEDPFDIIRAPGRRGGLYAFAADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDMKVGE 690
I L + E L P LR+YH SS RWI IQ FLD +G Y+RV++VD G FQ +PFDII PG +Y F D IG + I DCLG+SV++ + + P ++SGV++GT++ YAR MS L S FQ+CE+ GVD GLH+YLL++G + V FDQ SGP+ D+ G+
Sbjct: 2 ITPLEISRERLEPAALRKYHPSSARWIMIQRFLDVKGPEYERVLIVDAGQIFFQANPFDIIGDPG----VYTFTDDKLIGKSQQHSTKIQDCLGASVLAKLADKPAIHSGVSLGTSNLVVEYARQMSEVLSSAGFQACEKAGVDAGLHDYLLYSGGVQGVLRFDQSSGPMTDVPAGK 174
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: A0A3P3Y2T6_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y2T6_PLABS) HSP 1 Score: 137 bits (344), Expect = 4.420e-35 Identity = 87/233 (37.34%), Postives = 124/233 (53.22%), Query Frame = 1
Query: 1 RDLCLGTAVSDTDVQLVTFVASFREVAPWAD--LILFVDARSNDARREGIIEKYGIEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTRGFNYD---RVMMVDIGDTLFQEDPFDIIRAPGRRGGLYA-FAADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDMK 681
RDLCLG AV V+L F SFR+VAP A+ L+LF D S I E Y E++ FN ++L P ++R + S+ RW I+ +L G D R+++ D+ DT FQ +PFDI+ G + GL+A A PI G + DC G SV++ V SG+T+GTT + Y M+ +L SCER GVDQG+HN L+ G++ V G + ++
Sbjct: 74 RDLCLGMAVRLNAVELTAFALSFRQVAPSAEARLVLFTDVDSMPTASP-IAEAYNAELVVFNVDDLQPPVIRSFSPSNCRWFVIRQWLTEHGDRLDPSSRILLADVRDTFFQRNPFDIV---GEQQGLWATLEAGGPIAGCVWNRGWVQDCFGPSVLADVASKTISCSGITLGTTRAVVEYVNRMTAEL--ERRSSCERYGVDQGVHNVLVWTGDMANVHQIRPDEGQVAHIQ 300
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: A0A7S2RBK6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RBK6_9STRA) HSP 1 Score: 137 bits (344), Expect = 6.650e-35 Identity = 78/229 (34.06%), Postives = 121/229 (52.84%), Query Frame = 1
Query: 1 RDLCLGTAVSDTDVQLVTFVASFREVAPWADLILFVDARSNDARREGIIEKYGIEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTRGFNYDRVMMVDIGDTLFQEDPFDIIRAPGRRGGLYAF--AADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDMK 681
+DL +G + L F S R V+P A L+L++D+ + R I+E+Y + L F+ + P LR+YH S+YRW I +L Y RV++ D+ DT+FQ DPF+ G +AF IG G + DC G +V+ V + SGV+MG+T AY M + + EF +CER GVDQG+HN L+H + +++F Q +G + +++
Sbjct: 31 KDLVVGLGTGISPENLAVFCGSLRAVSPSAALVLYLDSPLPELHRR-IVERYDVTALEFSVSLIEPAFLRKYHPSNYRWPLIHRYLKDHANAYRRVVLADVRDTMFQADPFERFDR-----GFFAFHGVESRTIGQCGWNGGWVQDCFGRTVLQQVQSEAIICSGVSMGSTDEVLAYLGEMQRTMETKEFATCERNGVDQGVHNVLVHTKRIPNLKVFSQSNGWVANLQ 253
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: A0A3P3Y2I1_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3Y2I1_PLABS) HSP 1 Score: 133 bits (334), Expect = 1.320e-33 Identity = 84/233 (36.05%), Postives = 120/233 (51.50%), Query Frame = 1
Query: 1 RDLCLGTAVSDTDVQLVTFVASFREVAPWAD--LILFVDARSNDARREGIIEKYGIEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTRGFNYD---RVMMVDIGDTLFQEDPFDIIRAPGRRGGLYA-FAADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDMK 681
RD+CLG A T V+L FV+SFR+VAP AD L+LF D S I + Y L P +R +H S+YRW I+ +L G D R+++ D+ DT FQ +PFDI+ G + GL+A A PI G + DC G V++ V SG+T+GT + Y M+ +L SCER GVDQG+HN L+ G++ V + G + +++
Sbjct: 73 RDICLGMAARLTPVELTAFVSSFRQVAPSADARLVLFTDVDSMPTASP-IADAYNXXXXXXXXXXLQPPAIRSFHPSNYRWFVIRQWLTEHGDRLDPSSRILLADVRDTFFQRNPFDIV---GEQQGLWATLEAGGPIAGCGWNRGWVQDCFGPGVLADVASKTISCSGITLGTMPAVVEYVHRMTAEL--ERRSSCERNGVDQGVHNVLVWTGDMADVHLVRPDEGQVANIQ 299
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: A0A0G4J7Q5_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J7Q5_PLABS) HSP 1 Score: 137 bits (344), Expect = 1.540e-33 Identity = 87/233 (37.34%), Postives = 124/233 (53.22%), Query Frame = 1
Query: 1 RDLCLGTAVSDTDVQLVTFVASFREVAPWAD--LILFVDARSNDARREGIIEKYGIEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTRGFNYD---RVMMVDIGDTLFQEDPFDIIRAPGRRGGLYA-FAADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDMK 681
RDLCLG AV V+L F SFR+VAP A+ L+LF D S I E Y E++ FN ++L P ++R + S+ RW I+ +L G D R+++ D+ DT FQ +PFDI+ G + GL+A A PI G + DC G SV++ V SG+T+GTT + Y M+ +L SCER GVDQG+HN L+ G++ V G + ++
Sbjct: 74 RDLCLGMAVRLNAVELTAFALSFRQVAPSAEARLVLFTDVDSMPTASP-IAEAYNAELVVFNVDDLQPPVIRSFSPSNCRWFVIRQWLTEHGDRLDPSSRILLADVRDTFFQRNPFDIV---GEQQGLWATLEAGGPIAGCVWNRGWVQDCFGPSVLADVASKTISCSGITLGTTRAVVEYVNRMTAEL--ERRSSCERYGVDQGVHNVLVWTGDMANVHQIRPDEGQVAHIQ 300
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: A0A7S4P7D4_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4P7D4_GUITH) HSP 1 Score: 130 bits (328), Expect = 4.340e-32 Identity = 74/226 (32.74%), Postives = 115/226 (50.88%), Query Frame = 1
Query: 4 DLCLGTAVSDTDVQLVTFVASFREVAPWADLILFVDARSNDARREGIIEKYGIEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTRGFNYDRVMMVDIGDTLFQEDPFDIIRAPGRRGGLYAFAADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDMK 681
D+ +G A VQL FV S R + D++LFVD + + G + G+ + F E + E R++H S+ RW I F Y RV+M D+ DT FQ DPF+I++ + D IG G + DC G + S + P + SG++MGT + +Y + MS ++ EF +CER GVDQG+HN L+H + +++ Q G + +M+
Sbjct: 92 DIAIGIAHKIHAVQLAVFVKSLRAYSK-CDIVLFVDELEKEVEKIG--REAGVNFIIFKTSESMVERTRKFHPSTIRWPLIHQFFSLHPDKYKRVLMADVRDTAFQGDPFEILKDSSSSFLAFTGVQDRTIGQCGWNGGWVRDCFGPEMFSRLSSKPIICSGISMGTMDAVKSYLQAMSEHIMKQEFAACERNGVDQGVHNVLVHTDKIPHLRVNRQDDGLVANMQ 314
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: A0A0H5RB21_9EUKA (Uncharacterized protein (Fragment) n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RB21_9EUKA) HSP 1 Score: 123 bits (309), Expect = 5.720e-30 Identity = 78/235 (33.19%), Postives = 122/235 (51.91%), Query Frame = 1
Query: 1 RDLCLGTAVSDTDVQLVTFVASFREVAPWADLILFVDARSNDARREGIIEKYGIEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTRGFN-YDRVMMVDIGDTLFQEDPFDIIRAPGRRGGLYAFAADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAG---NLGTVQMFDQKSGPLVDMKVGES 693
+D+CLG A + LV FV SFRE A L+LF+ + + + + ++ +E + N + + P +R++H S+YRW+ ++NF+ N RV++VD+ DT+FQ DPF+II +P G + A PI G + DC G ++ V SGVT+G + Y MS LI CER GVDQG+HN ++ NL +++ D K + M V ++
Sbjct: 82 QDICLGMASGISLQDLVVFVKSFREATNDARLVLFMGIAAPEEHKR-FLNEHDVETVLVNFDTMFPTQIRKFHPSNYRWVLLRNFVSAAKLNPMSRVLLVDVRDTVFQSDPFEII-SPDEDGLWVSLEAGGPIISCDWNRGWVQDCFGDDILRAVSMKTISCSGVTLGRAGAILDYMNRMSAALIGRA--QCERNGVDQGVHNVIVWTQKIPNLHIIRIEDGKIAHIQAMSVSDA 312
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: L1IE52_GUITC (Uncharacterized protein (Fragment) n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1IE52_GUITC) HSP 1 Score: 119 bits (297), Expect = 1.460e-29 Identity = 66/180 (36.67%), Postives = 99/180 (55.00%), Query Frame = 1
Query: 160 IEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTRGFNYDRVMMVDIGDTLFQEDPFDIIRAPGRRGGLYAFAADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDM--KVGES 693
+ VL N L P L +YH S+ RW+ +Q+FL G N+++V++ D+ DT FQ DPF I+ GL+ F+ I G I C G V + + SG+++GTT +Y M+ ++ P F +CER GVDQG+HN L+H G+L + + DQ +GP+ + KVG S
Sbjct: 1 VTVLPVNRVSLDPATLGKYHPSTTRWVLMQSFLKRVGHNFNKVLLADVRDTGFQSDPFSIV----SEAGLWTFSESVNIMGDDWNTGWIRSCFGQGKVDELASKEIICSGISLGTTMHVQSYLDAMAKEINGPNFAACERNGVDQGIHNVLVHQGSLPGLHVLDQYNGPVAHLQSKVGMS 176
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: A0A8J2SXD9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SXD9_9STRA) HSP 1 Score: 121 bits (304), Expect = 9.700e-29 Identity = 74/230 (32.17%), Postives = 112/230 (48.70%), Query Frame = 1
Query: 1 RDLCLGTAVSDTDVQLVTFVASFREVAPWADLILFVDARSNDARREGIIEKYGIEVLRFNPEELLPEMLRRYHTSSYRWIQIQNFLDTR-GFNYDRVMMVDIGDTLFQEDPFDIIRAPGRRGGLYAF--AADHPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDMK 681
+DL +G A L F AS R+ DL+LFVD S D I+E++ ++++ ++P L P LR++H S+ RW I LD R NY V+ D+ DT FQ DPF + + Y F IG G I DC G + + P + SGV++ T YA M+ + +F CER GVDQG+HN L+H + + Q++ + +++
Sbjct: 76 KDLVIGLAKEIDAKNLAVFAASLRQTTTNCDLVLFVDRPSIDRTLHTIVERFSVDLIPYDPATLQPPQLRKFHASTLRWPLISRELDKRRARNYRGVLFADVRDTAFQSDPFGAMLTTQQV--FYGFNGVESRTIGECGWNGGWIRDCFGEAKRRKLASKPIVCSGVSIATFEEGRLYAAQMAEVVSDAQFAPCERNGVDQGVHNVLMHENEVKHAVIVSQRTALVANLQ 303
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Match: A0A7S3ZEK3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3ZEK3_9EUKA) HSP 1 Score: 109 bits (273), Expect = 3.450e-26 Identity = 65/163 (39.88%), Postives = 90/163 (55.21%), Query Frame = 1
Query: 223 SSYRWIQIQNFL--DTRGFNYDRVMMVDIGDTLFQEDPFDIIRAPGRRGGLYAFAAD--------HPIGWYPEIIGGINDCLGSSVVSGVIELPNLYSGVTMGTTSSAAAYARFMSTKLISPEFQSCEREGVDQGLHNYLLHAGNLGTVQMFDQKSGPLVDMK 681
SSYRW+ I FL + NY V++ D+ DT FQ+DPF I+ G G YA + D GW G I C G VV+ V P + SG+++ T + A AYAR M KL+SP Q CER GVDQG+HN L+ + +++ Q+SGP+ +M+
Sbjct: 2 SSYRWVLIHQFLQKEADARNYRGVLLADVRDTAFQKDPFSILDERGP--GFYASSEDGDQPKRKIRDCGWNS---GWIKSCYGQGVVNQVGNNPIICSGMSISTVAEAKAYARKMYDKLVSPGGQECERNGVDQGMHNVLVWTNEIPNLKIVTQESGPIANMQ 159 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1742.4117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1742.4117.1 >prot_H-paniculata_contig1742.4117.1 ID=prot_H-paniculata_contig1742.4117.1|Name=mRNA_H-paniculata_contig1742.4117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=232bp RDLCLGTAVSDTDVQLVTFVASFREVAPWADLILFVDARSNDARREGIIEback to top mRNA from alignment at H-paniculata_contig1742:19796..21337- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1742.4117.1 ID=mRNA_H-paniculata_contig1742.4117.1|Name=mRNA_H-paniculata_contig1742.4117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1542bp|location=Sequence derived from alignment at H-paniculata_contig1742:19796..21337- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1742:19796..21337- >mRNA_H-paniculata_contig1742.4117.1 ID=mRNA_H-paniculata_contig1742.4117.1|Name=mRNA_H-paniculata_contig1742.4117.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1392bp|location=Sequence derived from alignment at H-paniculata_contig1742:19796..21337- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |