mRNA_H-paniculata_contig1742.4115.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1742.4115.1
Unique NamemRNA_H-paniculata_contig1742.4115.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1742.4115.1 vs. uniprot
Match: D8LAW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW1_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 5.460e-14
Identity = 35/54 (64.81%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   25 SAFDRFPNGRLFEEEKISLRANTPGPEAYDVALNQRLEGVAFEEMISSLETMAA 186
            S+ DRFP GRLF EE+I  R  TPGPEAYDV L  RLEG +FE+M  SLET+A+
Sbjct:    2 SSLDRFPRGRLFSEEEIREREATPGPEAYDVGLENRLEGCSFEKMYGSLETLAS 55
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1742.4115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LAW1_ECTSI5.460e-1464.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1742contigH-paniculata_contig1742:8178..9314 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size209
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.7897024-CDS-H-paniculata_contig1742:8177..82151622929369.7897024-CDS-H-paniculata_contig1742:8177..8215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 8178..8215 +
1691480833.7716715-CDS-H-paniculata_contig1742:8177..82151691480833.7716715-CDS-H-paniculata_contig1742:8177..8215Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 8178..8215 +
1622929369.8093631-CDS-H-paniculata_contig1742:9144..93131622929369.8093631-CDS-H-paniculata_contig1742:9144..9313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 9145..9313 +
1691480833.781142-CDS-H-paniculata_contig1742:9144..93131691480833.781142-CDS-H-paniculata_contig1742:9144..9313Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 9145..9313 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1742.4115.1prot_H-paniculata_contig1742.4115.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1742 8178..9313 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1742.4115.1

>prot_H-paniculata_contig1742.4115.1 ID=prot_H-paniculata_contig1742.4115.1|Name=mRNA_H-paniculata_contig1742.4115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=69bp
VTSPSAAFSAFDRFPNGRLFEEEKISLRANTPGPEAYDVALNQRLEGVAF
EEMISSLETMAACERSLGN
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mRNA from alignment at H-paniculata_contig1742:8178..9314+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1742.4115.1 ID=mRNA_H-paniculata_contig1742.4115.1|Name=mRNA_H-paniculata_contig1742.4115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1137bp|location=Sequence derived from alignment at H-paniculata_contig1742:8178..9314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACTTCGCCAAGCGCCGCATTTTCCGCGTTTGACAGGTAGGTATTTCG
GTGTAGCGGCGGCGGCATGGATGGGGGGAAAGCGAGGGGAGCGAGGATAA
ACCGGGTTCCGGATTGCAGTATCGTTTAGATTAATGTTCATTTTTCGCGC
CATACTCCTCTTACAAGGTCGAGTCGATGTCTTGGGCTTCCTGCGGATAT
CCTTGTCCGACCTCCTCTGGGAAGATATAATCTCTAGAGCATATCTTGCT
TGTTGTGGGCATCGAGAAGAGCAACTATGTTGTGGTCAGTTCGTGTTTCT
TGCATATGCTTTCGTGTACTCCTGGGTTGTTCTGATGTGAAATTTCCCCA
ACATCCCCAACATTTGGTGCACCATGTGTCGCGCAGCATCTCTACCTGGC
TCGGAATTGCGGTTTGGTTGTGCAAAGACGGGGGCATTCGAGTGTGTCAA
TGGATTTCCCTCCAATCACTGAAACCGGTTCTATAAATTGTAGTAGAGTG
GAAAAGATTAGAAGCCTCAAGGGAATGTTTTTTTGAGAGATATAGACAAA
ATGGTGGAAACTATCAAAGTTCATGGGAGAAGGGTTTGACAGCGCTGTAT
CATCATTACCCCTTCTCCCGAAAGTGAGATTTGGAATTTATATATTCAGC
AAAAGATCTGAACAACCACAGTACTACGACAGAGTGAGCAACATCTCAAA
GAGAAAACATGACTGGGCAGTCCTTAGGTTCGACGATCTGTCGTTGTTGA
TATTCACGATTATGTTCGGGGTGGTACACGAAGTCGCCATCCATCTGAAA
AGCTGTAGGGGGTTTACTTGTCCTGACTTTGGTGTCTACGTAACTTCACT
GTTACGTATATAGTCGTTGCCTTTTACGACATGTACAACATGCTCAACAA
TGACTGCTATGTCATGCATCCCAATTTTTGCTCCCGCCTCCCCTATCTGT
TGCTCGGCGATACATAGGTTCCCTAATGGAAGGCTGTTCGAAGAGGAAAA
AATATCACTGAGAGCGAATACGCCAGGCCCTGAGGCGTACGACGTAGCAC
TCAACCAGCGGCTCGAGGGCGTGGCGTTCGAAGAGATGATAAGCTCCTTG
GAAACGATGGCCGCTTGCGAAAGAAGTTTGGGAAACC
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Coding sequence (CDS) from alignment at H-paniculata_contig1742:8178..9314+

>mRNA_H-paniculata_contig1742.4115.1 ID=mRNA_H-paniculata_contig1742.4115.1|Name=mRNA_H-paniculata_contig1742.4115.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=414bp|location=Sequence derived from alignment at H-paniculata_contig1742:8178..9314+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTACTTCGCCAAGCGCCGCATTTTCCGCGTTTGACAGGTTACTTCGCCA
AGCGCCGCATTTTCCGCGTTTGACAGGTTCCCTAATGGAAGGCTGTTCGA
AGAGGAAAAAATATCACTGAGAGCGAATACGCCAGGCCCTGAGGCGTACG
ACGTAGCACTCAACCAGCGGCTCGAGGGCGTGGCGTTCGAAGAGATGATA
AGCTCCTTGGAAACGATGGCCGCTTGCGAAAGAAGTTTGGGAAACGTTCC
CTAATGGAAGGCTGTTCGAAGAGGAAAAAATATCACTGAGAGCGAATACG
CCAGGCCCTGAGGCGTACGACGTAGCACTCAACCAGCGGCTCGAGGGCGT
GGCGTTCGAAGAGATGATAAGCTCCTTGGAAACGATGGCCGCTTGCGAAA
GAAGTTTGGGAAAC
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