mRNA_H-paniculata_contig1742.4114.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1742.4114.1
Unique NamemRNA_H-paniculata_contig1742.4114.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1742.4114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1742contigH-paniculata_contig1742:5686..6321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size200
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.5808733-CDS-H-paniculata_contig1742:5685..57361622929369.5808733-CDS-H-paniculata_contig1742:5685..5736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 5686..5736 +
1691480833.6696281-CDS-H-paniculata_contig1742:5685..57361691480833.6696281-CDS-H-paniculata_contig1742:5685..5736Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 5686..5736 +
1622929369.6164284-CDS-H-paniculata_contig1742:6173..63201622929369.6164284-CDS-H-paniculata_contig1742:6173..6320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 6174..6320 +
1691480833.679305-CDS-H-paniculata_contig1742:6173..63201691480833.679305-CDS-H-paniculata_contig1742:6173..6320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1742 6174..6320 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1742.4114.1prot_H-paniculata_contig1742.4114.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1742 5686..6320 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1742.4114.1

>prot_H-paniculata_contig1742.4114.1 ID=prot_H-paniculata_contig1742.4114.1|Name=mRNA_H-paniculata_contig1742.4114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=66bp
VRAAGAWDAPHDSPGPQAYNEDDKWLLRYRNQPSVRISLAKCERDFALPT
TPGPGDYNISGISIEG
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mRNA from alignment at H-paniculata_contig1742:5686..6321+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1742.4114.1 ID=mRNA_H-paniculata_contig1742.4114.1|Name=mRNA_H-paniculata_contig1742.4114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=636bp|location=Sequence derived from alignment at H-paniculata_contig1742:5686..6321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAGGGCAGCAGGTGCTTGGGACGCCCCACACGATAGCCCAGGACCCCA
GGTGAGGAATAGACTATATAAGAGCCTGTGATGTTTCTACCAACAAACAT
TAGACTAAGATGCCTAGCAAAGTGTATTGGTTTCAGACTACCCAGACTTT
GCATTCATTTCGTCTCTACTTTAAACGTTTCTTCGAAGGATAAAGACGGA
CCGCCGCCCCGCTCTCTTGTCGTGAGTTGAATTGCCGTCAGGATATCTGC
GTGTCTCCTGAGACCTGTGTTTCAATTTTCTCAGAGACATGGGCAACAAA
TATCGAAGTCCAGTACAGCGTTTCGCAGTAGTTGAGCAAAGCGGGATCGC
CACAAATGATCAAAATATTTCTACACACCGAACATAATCAAAATATGACT
CGAAATTTTCACCCCTGACCCGTCTCGCCCCGTCTCGCCCCACCCATTTC
CGTGCCGTTTTCCGATACATGATAATTGGATCGTTCAGGCGTATAACGAG
GATGATAAATGGCTGCTGAGGTATCGGAACCAGCCGTCTGTTCGAATTTC
CTTAGCCAAGTGCGAGCGCGACTTCGCACTTCCAACGACCCCCGGGCCGG
GGGACTACAACATTTCAGGGATATCCATAGAAGGCA
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Coding sequence (CDS) from alignment at H-paniculata_contig1742:5686..6321+

>mRNA_H-paniculata_contig1742.4114.1 ID=mRNA_H-paniculata_contig1742.4114.1|Name=mRNA_H-paniculata_contig1742.4114.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=396bp|location=Sequence derived from alignment at H-paniculata_contig1742:5686..6321+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAAGGGCAGCAGGTGCTTGGGACGCCCCACACGATAGCCCAGGACCCCA
GGTAAGGGCAGCAGGTGCTTGGGACGCCCCACACGATAGCCCAGGACCCC
AGGCGTATAACGAGGATGATAAATGGCTGCTGAGGTATCGGAACCAGCCG
TCTGTTCGAATTTCCTTAGCCAAGTGCGAGCGCGACTTCGCACTTCCAAC
GACCCCCGGGCCGGGGGACTACAACATTTCAGGGATATCCATAGAAGGCG
CGTATAACGAGGATGATAAATGGCTGCTGAGGTATCGGAACCAGCCGTCT
GTTCGAATTTCCTTAGCCAAGTGCGAGCGCGACTTCGCACTTCCAACGAC
CCCCGGGCCGGGGGACTACAACATTTCAGGGATATCCATAGAAGGC
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