mRNA_H-paniculata_contig17414.4111.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17414.4111.1 vs. uniprot
Match: D8LQ03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ03_ECTSI) HSP 1 Score: 173 bits (438), Expect = 3.310e-47 Identity = 92/172 (53.49%), Postives = 115/172 (66.86%), Query Frame = 1
Query: 349 LELLTCDCGPSDCRVEERLELSMDFALDRPLPDAYWEIKFVVDSVNKRHEIALGATDRRDYPSGVSSMQFQVPRISVEGIMPCELANTGLLVAALKSPSAAYAITDSHLQKQRGNGREEEATLRENYDCGGGGGGTEEKGDMSGEVAAVNLVVQVSDAGRGRLVRCIYSPLE 864
LEL++ +CGPSDC V++RLELSMDFALDRPL A+W++KF+VDSVN+RH + LGAT RDYP G SM F+VPR+SVEGI PC LANTGLLVA+L + ++++ +GRE A VA VNLVVQV+D G+GRL+R IYSPLE
Sbjct: 46 LELISVECGPSDCPVDDRLELSMDFALDRPLAGAWWDVKFLVDSVNERHLVRLGATSERDYPRGSCSMHFEVPRVSVEGIKPCTLANTGLLVASLMRRGGENGEPPASAEEKK-SGREPGADA---------------------VVAQVNLVVQVADVGQGRLMRVIYSPLE 195
BLAST of mRNA_H-paniculata_contig17414.4111.1 vs. uniprot
Match: A0A7S0XDV4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0XDV4_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 1.010e-14 Identity = 45/114 (39.47%), Postives = 62/114 (54.39%), Query Frame = 1
Query: 349 LELLTCDCGPSD-CRVEERLELSMDFALDRPLPDAYWEIKFVVDSVNKRHEIALGATDRRDYPSGVSSMQFQVPRISVEGIMPCELANTGLLVAALKSPSAAYAITDSHLQKQR 687
++++ D P+ C + + LEL + F LDR + AYW IKF+VDS +KR LG T DYP G S M F V I + GI P L N+GLL+A A A + + Q+
Sbjct: 27 IQIINIDIQPNTKCNINDPLELRITFELDRDVVAAYWIIKFLVDSTDKRVIRILGETQVEDYPDGESEMIFSVDTIDISGISPSVLTNSGLLMAEFIVDGIAVASVNMVINVQK 140
BLAST of mRNA_H-paniculata_contig17414.4111.1 vs. uniprot
Match: F0W2S7_9STRA (Uncharacterized protein AlNc14C10G1310 n=4 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W2S7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 3.840e-13 Identity = 41/99 (41.41%), Postives = 57/99 (57.58%), Query Frame = 1
Query: 340 VARLELLTCDCGPSDCRVEERLELSMDFALDRPLPDAYWEIKFVVDSVNKRHEIALGATDRRDYPSGVSSMQFQVPRISVEGIMPCELANTGLLVAALK 636
+ +++ D P+ + L L++DF LDRPL +A W IK++VDSV+ RH I LG + +Y G + F V I V I P L N GLLVA+LK
Sbjct: 90 LPNVDVTKVDISPNPAPLCGSLRLTVDFTLDRPLQNAEWLIKYLVDSVHHRHVIELGTVPKSNYIHGENRFDFSVDSIDVNLIQPSHLTNCGLLVASLK 188
BLAST of mRNA_H-paniculata_contig17414.4111.1 vs. uniprot
Match: A0A484DT60_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DT60_BRELC) HSP 1 Score: 63.5 bits (153), Expect = 1.270e-8 Identity = 45/172 (26.16%), Postives = 70/172 (40.70%), Query Frame = 1
Query: 349 LELLTCDCGPSDCRVEERLELSMDFALDRPLPDAYWEIKFVVDSVNKRHEIALGATDRRDYPSGVSSMQFQVPRISVEGIMPCELANTGLLVAALKSPSAAYAITDSHLQKQRGNGREEEATLRENYDCGGGGGGTEEKGDMSGEVAAVNLVVQVSDAGRGRLVRCIYSPLE 864
+++ D P+ ++ + L L +DF LD P+ + +W I+ LG TD +Y SG + +F P+I V G +L N GLL+AALK D +G + + +V+QV + G L R +YSPLE
Sbjct: 7 VDVTGVDISPNPAKLTDELNLQVDFHLDVPVHNGFWNIE-------------LGQTDATNYASGDNQFRFSCPKIDVSGFKSSQLTNCGLLIAALK--------------------------------------------DDNGNIFDLKMVIQVLEQ-LGALQRIVYSPLE 120
BLAST of mRNA_H-paniculata_contig17414.4111.1 vs. uniprot
Match: A0A833STT0_PHYIN (Uncharacterized protein n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833STT0_PHYIN) HSP 1 Score: 60.5 bits (145), Expect = 5.880e-7 Identity = 52/214 (24.30%), Postives = 81/214 (37.85%), Query Frame = 1
Query: 349 LELLTCDCGPSDCRVEERLELSMDFALDRPLPDAYWEIKFV------------------------------------VD-SVNKRHEIA-----LGATDRRDYPSGVSSMQFQVPRISVEGIMPCELANTGLLVAALKSPSAAYAITDSHLQKQRGNGREEEATLRENYDCGGGGGGTEEKGDMSGEVAAVNLVVQVSDAGRGRLVRCIYSPLE 864
+++ D P+ + + L L +DF LD P+ + +W+I+ V +D S+ K A LG + +Y G + QF P+I++ GI P +L N GLL+AA K D SG++ + +V+QVS+ RG+L R IYSPLE
Sbjct: 15 VDVTAVDISPNPAALTDELNLEVDFHLDAPVINGFWDIEVVRFCVSIWWTLSPSGTLSISFSHFPQPYSRVMTKYLYLDVSLTKSEFFACCSAQLGQVEATNYAPGDNHFQFSTPQINISGIQPSQLTNCGLLIAAFK--------------------------------------------DDSGDILDLKMVIQVSEQ-RGKLQRIIYSPLE 183 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17414.4111.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17414.4111.1 >prot_H-paniculata_contig17414.4111.1 ID=prot_H-paniculata_contig17414.4111.1|Name=mRNA_H-paniculata_contig17414.4111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=151bp MDFALDRPLPDAYWEIKFVVDSVNKRHEIALGATDRRDYPSGVSSMQFQVback to top mRNA from alignment at H-paniculata_contig17414:450..4862+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17414.4111.1 ID=mRNA_H-paniculata_contig17414.4111.1|Name=mRNA_H-paniculata_contig17414.4111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4413bp|location=Sequence derived from alignment at H-paniculata_contig17414:450..4862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17414:450..4862+ >mRNA_H-paniculata_contig17414.4111.1 ID=mRNA_H-paniculata_contig17414.4111.1|Name=mRNA_H-paniculata_contig17414.4111.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=906bp|location=Sequence derived from alignment at H-paniculata_contig17414:450..4862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |