mRNA_H-paniculata_contig17411.4110.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17411.4110.1
Unique NamemRNA_H-paniculata_contig17411.4110.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17411.4110.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17411contigH-paniculata_contig17411:2207..2895 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size689
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17411.4110.1prot_H-paniculata_contig17411.4110.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17411 2354..2770 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.3502676-UTR-H-paniculata_contig17411:2206..23531622929369.3502676-UTR-H-paniculata_contig17411:2206..2353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17411 2207..2353 +
1691480833.5763462-UTR-H-paniculata_contig17411:2206..23531691480833.5763462-UTR-H-paniculata_contig17411:2206..2353Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17411 2207..2353 +
1622929369.3757944-UTR-H-paniculata_contig17411:2770..28951622929369.3757944-UTR-H-paniculata_contig17411:2770..2895Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17411 2771..2895 +
1691480833.5983455-UTR-H-paniculata_contig17411:2770..28951691480833.5983455-UTR-H-paniculata_contig17411:2770..2895Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17411 2771..2895 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.3624184-CDS-H-paniculata_contig17411:2353..27701622929369.3624184-CDS-H-paniculata_contig17411:2353..2770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17411 2354..2770 +
1691480833.5882666-CDS-H-paniculata_contig17411:2353..27701691480833.5882666-CDS-H-paniculata_contig17411:2353..2770Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17411 2354..2770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17411.4110.1

>prot_H-paniculata_contig17411.4110.1 ID=prot_H-paniculata_contig17411.4110.1|Name=mRNA_H-paniculata_contig17411.4110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=139bp
MRLSISLCGMLEVRQVQASLACFISVMLKPSARRFSAENVSLPTWTSLGL
VSAAMHPAMLTNSKNNFLHIKKLICTPSNFGTPLLTCVRYRIYVANVSLP
LGVDSFPTKSTVVLRPSTFILPMTLAAVRIPLHAPASS*
back to top

mRNA from alignment at H-paniculata_contig17411:2207..2895+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17411.4110.1 ID=mRNA_H-paniculata_contig17411.4110.1|Name=mRNA_H-paniculata_contig17411.4110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=689bp|location=Sequence derived from alignment at H-paniculata_contig17411:2207..2895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCGCAAAGTATTTGGCAGGAGTTTCGCCCCGCATCATAGTCACTCGTTC
AAACTTCTTCTCCCACATGGTGATCTGACCCTCGGATTTCGGAACAAAAT
ATTCGTTCAAGTACGACCACGCGGCACTCGGGGACTGTTGGTCATAAATG
CGACTGAGTATATCTCTTTGTGGAATGCTCGAAGTGAGGCAAGTCCAGGC
GTCCCTAGCTTGCTTTATTTCTGTCATGTTAAAACCTTCTGCGCGGAGAT
TCTCTGCGGAAAACGTCTCGCTCCCTACTTGGACTTCTCTCGGACTGGTG
AGTGCAGCTATGCACCCTGCGATGTTGACAAACTCCAAAAATAACTTCCT
CCATATCAAGAAGTTGATCTGTACTCCATCAAACTTCGGTACGCCACTTT
TGACGTGTGTAAGGTACCGTATATATGTCGCAAACGTATCGCTACCTCTT
GGTGTAGATTCATTTCCTACAAAGTCAACAGTCGTCCTCAGGCCATCAAC
ATTCATTCTACCTATGACTTTGGCAGCGGTGCGCATTCCGCTGCATGCAC
CAGCAAGTTCCTGATTGCTGATGTCTAGTCCCTCGTCCCTGCCGGTAGCG
TTTCCTGTACTGCCACCGGCTACGCCACTGGGAGCTTCCTCTAGCTCCCG
TAAGCGGGTTTCCGATTCCCGCTGGCGAGTTTCTGCTTC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17411:2207..2895+

>mRNA_H-paniculata_contig17411.4110.1 ID=mRNA_H-paniculata_contig17411.4110.1|Name=mRNA_H-paniculata_contig17411.4110.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at H-paniculata_contig17411:2207..2895+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCGACTGAGTATATCTCTTTGTGGAATGCTCGAAGTGAGGCAAGTCCA
GGCGTCCCTAGCTTGCTTTATTTCTGTCATGTTAAAACCTTCTGCGCGGA
GATTCTCTGCGGAAAACGTCTCGCTCCCTACTTGGACTTCTCTCGGACTG
GTGAGTGCAGCTATGCACCCTGCGATGTTGACAAACTCCAAAAATAACTT
CCTCCATATCAAGAAGTTGATCTGTACTCCATCAAACTTCGGTACGCCAC
TTTTGACGTGTGTAAGGTACCGTATATATGTCGCAAACGTATCGCTACCT
CTTGGTGTAGATTCATTTCCTACAAAGTCAACAGTCGTCCTCAGGCCATC
AACATTCATTCTACCTATGACTTTGGCAGCGGTGCGCATTCCGCTGCATG
CACCAGCAAGTTCCTGAATGCGACTGAGTATATCTCTTTGTGGAATGCTC
GAAGTGAGGCAAGTCCAGGCGTCCCTAGCTTGCTTTATTTCTGTCATGTT
AAAACCTTCTGCGCGGAGATTCTCTGCGGAAAACGTCTCGCTCCCTACTT
GGACTTCTCTCGGACTGGTGAGTGCAGCTATGCACCCTGCGATGTTGACA
AACTCCAAAAATAACTTCCTCCATATCAAGAAGTTGATCTGTACTCCATC
AAACTTCGGTACGCCACTTTTGACGTGTGTAAGGTACCGTATATATGTCG
CAAACGTATCGCTACCTCTTGGTGTAGATTCATTTCCTACAAAGTCAACA
GTCGTCCTCAGGCCATCAACATTCATTCTACCTATGACTTTGGCAGCGGT
GCGCATTCCGCTGCATGCACCAGCAAGTTCCTGA
back to top