mRNA_H-paniculata_contig17400.4107.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17400.4107.1
Unique NamemRNA_H-paniculata_contig17400.4107.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: A0A6H5L225_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L225_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 3.550e-41
Identity = 73/88 (82.95%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LDRLS+SAP HLKCPIC KIMSDAVI+PCC KSTCDSCVRRAL AS  MSCPLC++R V PDSLLPN SLRA VDEYLTRVTRESRG+
Sbjct:  149 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQSRGVGPDSLLPNESLRAGVDEYLTRVTRESRGK 236
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BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: D8LMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD5_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.010e-29
Identity = 56/67 (83.58%), Postives = 59/67 (88.06%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPN 201
            LDRLS+SAP HLKCPIC KIMSDAVI+PCC KSTCDSCVRRAL AS  MSCPLC+TR V PDSLLPN
Sbjct:  139 LDRLSESAPKHLKCPICSKIMSDAVILPCCAKSTCDSCVRRALNASASMSCPLCQTRGVGPDSLLPN 205
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BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: A0A836CNQ4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNQ4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 9.660e-26
Identity = 51/88 (57.95%), Postives = 65/88 (73.86%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LD+LS +AP HLKCP+C  I+ DAV+VPCC  S CDSCVR AL A+  M CPLC    V PD L+PN SLRAA D+++ R+T+++R R
Sbjct:  331 LDQLSAAAPEHLKCPLCRNIVQDAVLVPCCQGSACDSCVRDALAAN-SMQCPLCSRPGVTPDQLIPNRSLRAAADDFVARMTKDARAR 417
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BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: A0A8K1C5H0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5H0_PYTOL)

HSP 1 Score: 93.2 bits (230), Expect = 3.380e-20
Identity = 42/88 (47.73%), Postives = 62/88 (70.45%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LD+L  + P HL CP+C ++M+DAV++PCC +S CD C+R AL    +++CPLC T ++ P+ LLPN  LRA+V+E+L R   E + R
Sbjct:  334 LDQLISNPPDHLACPLCKRLMNDAVLIPCCQESACDECLRSAL-IDHNLTCPLCNTPNMSPEKLLPNKVLRASVEEFLRRARTEQQER 420
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BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: K3X144_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X144_GLOUD)

HSP 1 Score: 91.3 bits (225), Expect = 1.540e-19
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LD+   + P HL CP+C ++M+DAV++PCC +S CD C+R AL     ++CPLC T ++ P+ LLPN  LR +VDE+L R   E + R
Sbjct:  336 LDQFIANPPDHLACPLCKRLMNDAVLIPCCQESACDECLRSAL-IEKKLTCPLCNTTNMSPEKLLPNKVLRTSVDEFLRRARTEQQER 422
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BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: A0A2P4Y5F3_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A2P4Y5F3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 1.960e-19
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LD+   + P HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC   ++ P+ LLPN  LR +VDE+L R   E + R
Sbjct:  339 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVSNMSPEKLLPNKVLRTSVDEFLRRARTEQQER 425
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BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: D0NE99_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=D0NE99_PHYIT)

HSP 1 Score: 90.9 bits (224), Expect = 2.120e-19
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LD+   + P HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC   ++ P+ LLPN  LR +VDE+L R   E + R
Sbjct:  332 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVSNMSPEKLLPNKVLRTSVDEFLRRARTEQQER 418
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BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: A0A3R7NI29_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7NI29_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.140e-19
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LD+   + P HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC   ++ P+ LLPN  LR +VDE+L R   E + R
Sbjct:  342 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVTNMSPEKLLPNKVLRTSVDEFLRRARTEQQER 428
[Close]
BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: A0A329T760_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T760_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.150e-19
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LD+   + P HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC   ++ P+ LLPN  LR +VDE+L R   E + R
Sbjct:  340 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVSNMSPEKLLPNKVLRTSVDEFLRRARTEQQER 426
[Close]
BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Match: A0A421G8I3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421G8I3_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 2.150e-19
Identity = 41/88 (46.59%), Postives = 58/88 (65.91%), Query Frame = 1 
Query:    1 LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMSCPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR 264
            LD+   + P HL CP+C ++MSDAV++PCC +S CD C+R AL     ++CPLC   ++ P+ LLPN  LR +VDE+L R   E + R
Sbjct:  342 LDQFISNPPEHLACPLCRRLMSDAVLIPCCQESACDECLRSAL-IERKLTCPLCNVTNMSPEKLLPNKVLRTSVDEFLRRARTEQQER 428
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17400.4107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L225_9PHAE3.550e-4182.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMD5_ECTSI1.010e-2983.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CNQ4_9STRA9.660e-2657.95Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8K1C5H0_PYTOL3.380e-2047.73Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3X144_GLOUD1.540e-1946.59Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A2P4Y5F3_9STRA1.960e-1946.59Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
D0NE99_PHYIT2.120e-1946.59Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3R7NI29_9STRA2.140e-1946.59Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A329T760_9STRA2.150e-1946.59Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A421G8I3_9STRA2.150e-1946.59Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17400contigH-paniculata_contig17400:4154..5354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue1.4e-24
Seed eggNOG ortholog2880.D8LMD5
KEGG koko:K10624,ko:K15541
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
EggNOG free text desc.zinc ion binding
EggNOG OGsCOG5222@1,KOG0314@2759
Ec32 ortholog descriptionDWNN domain
Ec32 orthologEc-05_002370.1
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929369.0527864-CDS-H-paniculata_contig17400:4153..43561622929369.0527864-CDS-H-paniculata_contig17400:4153..4356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17400 4154..4356 +
1691480833.4028258-CDS-H-paniculata_contig17400:4153..43561691480833.4028258-CDS-H-paniculata_contig17400:4153..4356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17400 4154..4356 +
1622929369.0689359-CDS-H-paniculata_contig17400:5293..53541622929369.0689359-CDS-H-paniculata_contig17400:5293..5354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17400 5294..5354 +
1691480833.4209082-CDS-H-paniculata_contig17400:5293..53541691480833.4209082-CDS-H-paniculata_contig17400:5293..5354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17400 5294..5354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17400.4107.1prot_H-paniculata_contig17400.4107.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17400 4154..5354 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17400.4107.1

>prot_H-paniculata_contig17400.4107.1 ID=prot_H-paniculata_contig17400.4107.1|Name=mRNA_H-paniculata_contig17400.4107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
LDRLSKSAPAHLKCPICFKIMSDAVIVPCCHKSTCDSCVRRALGASPDMS
CPLCKTRDVRPDSLLPNMSLRAAVDEYLTRVTRESRGR
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mRNA from alignment at H-paniculata_contig17400:4154..5354+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17400.4107.1 ID=mRNA_H-paniculata_contig17400.4107.1|Name=mRNA_H-paniculata_contig17400.4107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1201bp|location=Sequence derived from alignment at H-paniculata_contig17400:4154..5354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGACAGGCTCTCGAAGTCAGCGCCGGCACACCTCAAGTGCCCAATCTG
CTTCAAGATCATGTCCGACGCTGTGATTGTGCCCTGTTGCCACAAGAGCA
CGTGTGACTCGTGCGTGCGACGGGCTCTTGGGGCGTCCCCTGATATGTCG
TGTCCGCTGTGCAAAACGAGAGATGTGCGGCCTGACAGCTTGCTCCCCAA
CATGTGAGAGTTGATTTTTGAAGGGTTTTATGTTATTATTATATATATAT
ATATATATTTATTTATTTTCAGGGCTTTTCACACTACCTGCATTTTTACA
TGACCCTTTTCTACGCGTGGCCAAAATTGAAACCGGTTCGCAATGATTCT
GTTTTGACTTTTGTCCTTTTTTTTTTCTGGAGTTTTCCTGACATGTAAGT
CGATTTTGTTTGGTTTGCTTTACTTTATTTTGGTCTTGTTTCGATTCTTT
CGGTCTTGCTGTGTTGAGCGTGGTCATTTTCCAAAGGGGTCAAATTGACG
GTAGATAATGCCTCCTTCAACGTTTCGGGGAGGTGAGGTTGATGGATGTG
TACTGTAGATTTCCCGTGAGAGGGTATACGGCAGCTTCGTAGACCTCAAG
GTAAAATGTGCTGTGGATGCATTTGACTGTTGTGCCTTACAGACGACGCC
AATGTGGACCCTATCCAGGCACGGCGTTACTCGTAAGCACTGCGCAAGCC
TGGGACATCGTGAGCGGCTAGCTAGGCAATTAAGACGCGCTTTCCAAGCG
TAAACCTTGAAATTCTCGCGTCTGAAGGGCGGCGTCAAAAATCACCAATT
TAGAGAGTAGTCCGGTGCGCCAGACGGGGATCAGCCCTCTATATGAGGTT
ATTTTACTCTTCCTGCACACAGTCCGCCAACGGTTTCCGGGTCTCGGATA
TCGGATCTTGTACGTTAACATCGGAACTGAAACGAGGATGTTGATTTAGG
TAGGGGACAAGGAGTTTCAGTATGTATCCCTGTAACCGTCGGAAACGTGC
TTCTCACAGCCGAGTGCTACAGGAAGCATTCACACCCTCGCTTATGTAGT
CATGGTTGACCATGACTACGGGTACATTCAGCAATCTCAGCATGAAACGA
ACAGTTATGTTATATTTCCCCCACCCCACACCTTCAACAGGTCGCTACGC
GCTGCGGTGGACGAGTACTTGACGAGGGTAACGCGGGAGAGCCGTGGACG
G
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Coding sequence (CDS) from alignment at H-paniculata_contig17400:4154..5354+

>mRNA_H-paniculata_contig17400.4107.1 ID=mRNA_H-paniculata_contig17400.4107.1|Name=mRNA_H-paniculata_contig17400.4107.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig17400:4154..5354+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGGACAGGCTCTCGAAGTCAGCGCCGGCACACCTCAAGTGCCCAATCTG
CTTCAAGATCATGTCCGACGCTGTGATTGTGCCCTGTTGCCACAAGAGCA
CGTGTGACTCGTGCGTGCGACGGGCTCTTGGGGCGTCCCCTGATATGTCG
TGTCCGCTGTGCAAAACGAGAGATGTGCGGCCTGACAGCTTGCTCCCCAA
CATCTGGACAGGCTCTCGAAGTCAGCGCCGGCACACCTCAAGTGCCCAAT
CTGCTTCAAGATCATGTCCGACGCTGTGATTGTGCCCTGTTGCCACAAGA
GCACGTGTGACTCGTGCGTGCGACGGGCTCTTGGGGCGTCCCCTGATATG
TCGTGTCCGCTGTGCAAAACGAGAGATGTGCGGCCTGACAGCTTGCTCCC
CAACATGTCGCTACGCGCTGCGGTGGACGAGTACTTGACGAGGGTAACGC
GGGAGAGCCGTGGACGGGTCGCTACGCGCTGCGGTGGACGAGTACTTGAC
GAGGGTAACGCGGGAGAGCCGTGGACGG
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