mRNA_H-paniculata_contig1740.4106.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1740.4106.1
Unique NamemRNA_H-paniculata_contig1740.4106.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1740.4106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1740contigH-paniculata_contig1740:22925..23692 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size768
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929368.89083-CDS-H-paniculata_contig1740:22924..233441622929368.89083-CDS-H-paniculata_contig1740:22924..23344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1740 22925..23344 +
1691480833.358768-CDS-H-paniculata_contig1740:22924..233441691480833.358768-CDS-H-paniculata_contig1740:22924..23344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1740 22925..23344 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929368.9062796-UTR-H-paniculata_contig1740:23344..236921622929368.9062796-UTR-H-paniculata_contig1740:23344..23692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1740 23345..23692 +
1691480833.367262-UTR-H-paniculata_contig1740:23344..236921691480833.367262-UTR-H-paniculata_contig1740:23344..23692Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1740 23345..23692 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1740.4106.1prot_H-paniculata_contig1740.4106.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1740 22925..23344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1740.4106.1

>prot_H-paniculata_contig1740.4106.1 ID=prot_H-paniculata_contig1740.4106.1|Name=mRNA_H-paniculata_contig1740.4106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
GLHPILGRRLHPSVRAVDVLAVGRENKFRCHTRAHDRNHGHRSTSSLDLR
CSRSRVYEASAGTGRTGGNLIALDGVRSGNVLDFQPNEWVQGFRFSVRDL
GQQRVVAVPHELLGSGVGPPAPNCLKHDCEIEVISVTSP*
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mRNA from alignment at H-paniculata_contig1740:22925..23692+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1740.4106.1 ID=mRNA_H-paniculata_contig1740.4106.1|Name=mRNA_H-paniculata_contig1740.4106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=768bp|location=Sequence derived from alignment at H-paniculata_contig1740:22925..23692+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTTCACCCCATCCTCGGGCGTCGCCTTCACCCAAGTGTCCGTGCAGT
CGATGTACTGGCGGTAGGTCGGGAGAATAAATTCCGATGCCATACTCGAG
CACATGATCGCAATCATGGCCATCGTAGTACAAGTAGTCTCGATCTTCGC
TGTAGTCGCAGTCGGGTTTATGAAGCCAGTGCCGGGACGGGACGTACGGG
CGGTAATCTCATCGCGCTAGATGGCGTCAGGTCCGGCAACGTTCTTGATT
TTCAACCCAACGAATGGGTCCAAGGTTTCCGTTTCAGTGTGCGCGACCTT
GGGCAACAGCGTGTCGTTGCAGTGCCGCATGAACTCCTCGGCAGCGGCGT
TGGACCCCCCGCCCCAAATTGCCTAAAGCATGATTGCGAAATTGAAGTCA
TTTCTGTCACTTCACCATAGCTTACAATACCGAGCACAACGGCCGGACAA
CTGTAGACAACTGCACCCATCCTACATATGCCAGCATACGCAGCATGTGT
GGCGTAGGGAGAAAGGAATCCTGCACTATATGCCTTCCGCGTATGGCTAC
ATTCCTGACCGCCTAGATCCTAATTGGGTTGGGGCTCCAGCCTTCGTTGC
TGGAGGCCTTTTCTTGCCAAACTTAACGAAAACAGCGGGTTAGGAGGTGC
ATATTTGCAGTAGCCTTGTCAAACCACTATGCAGTCCAAGTGACCACTTG
TCTATTTGACTCTCAAGATGGAATTCTTACGCGAAGATAGGCAGTGTCAC
CTTCCCCAGGCCTGCTTT
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Coding sequence (CDS) from alignment at H-paniculata_contig1740:22925..23692+

>mRNA_H-paniculata_contig1740.4106.1 ID=mRNA_H-paniculata_contig1740.4106.1|Name=mRNA_H-paniculata_contig1740.4106.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig1740:22925..23692+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCTTCACCCCATCCTCGGGCGTCGCCTTCACCCAAGTGTCCGTGCAGT
CGATGTACTGGCGGTAGGTCGGGAGAATAAATTCCGATGCCATACTCGAG
CACATGATCGCAATCATGGCCATCGTAGTACAAGTAGTCTCGATCTTCGC
TGTAGTCGCAGTCGGGTTTATGAAGCCAGTGCCGGGACGGGACGTACGGG
CGGTAATCTCATCGCGCTAGATGGCGTCAGGTCCGGCAACGTTCTTGATT
TTCAACCCAACGAATGGGTCCAAGGTTTCCGTTTCAGTGTGCGCGACCTT
GGGCAACAGCGTGTCGTTGCAGTGCCGCATGAACTCCTCGGCAGCGGCGT
TGGACCCCCCGCCCCAAATTGCCTAAAGCATGATTGCGAAATTGAAGTCA
TTTCTGTCACTTCACCATAGGGTCTTCACCCCATCCTCGGGCGTCGCCTT
CACCCAAGTGTCCGTGCAGTCGATGTACTGGCGGTAGGTCGGGAGAATAA
ATTCCGATGCCATACTCGAGCACATGATCGCAATCATGGCCATCGTAGTA
CAAGTAGTCTCGATCTTCGCTGTAGTCGCAGTCGGGTTTATGAAGCCAGT
GCCGGGACGGGACGTACGGGCGGTAATCTCATCGCGCTAGATGGCGTCAG
GTCCGGCAACGTTCTTGATTTTCAACCCAACGAATGGGTCCAAGGTTTCC
GTTTCAGTGTGCGCGACCTTGGGCAACAGCGTGTCGTTGCAGTGCCGCAT
GAACTCCTCGGCAGCGGCGTTGGACCCCCCGCCCCAAATTGCCTAAAGCA
TGATTGCGAAATTGAAGTCATTTCTGTCACTTCACCATAG
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