mRNA_H-paniculata_contig174.4102.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig174.4102.1
Unique NamemRNA_H-paniculata_contig174.4102.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig174.4102.1 vs. uniprot
Match: A0A6H5J936_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J936_9PHAE)

HSP 1 Score: 161 bits (408), Expect = 3.400e-44
Identity = 75/90 (83.33%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 CIEHLSHGRLKIDLRPNFHSWGNRRYQVLHVTNHVLSTLTQQGDQGLPAALQTNSPSRFEGGELALLECVQELVTCIRISERDTLARLIC 270
            CIEHLSHGRLKI+LRPNFH+WGNRRY+VLHV NHVLS LTQ GD+GLPAALQ   P  FEGGE ALL CV+ELVTCIRISERDTLARLIC
Sbjct:  620 CIEHLSHGRLKIELRPNFHTWGNRRYRVLHVANHVLSMLTQTGDRGLPAALQAGDPHAFEGGEAALLRCVEELVTCIRISERDTLARLIC 709
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BLAST of mRNA_H-paniculata_contig174.4102.1 vs. uniprot
Match: D8LRD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRD8_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 4.210e-44
Identity = 75/90 (83.33%), Postives = 80/90 (88.89%), Query Frame = 1 
Query:    1 CIEHLSHGRLKIDLRPNFHSWGNRRYQVLHVTNHVLSTLTQQGDQGLPAALQTNSPSRFEGGELALLECVQELVTCIRISERDTLARLIC 270
            CIEHLSHGRLKI+LRPNFH+WGNRRY+VLHV NHVLS LTQ GD+GLPAALQ   P  FEGGE ALL CV+ELVTCIRISERDTLARLIC
Sbjct:  423 CIEHLSHGRLKIELRPNFHTWGNRRYRVLHVANHVLSMLTQTGDRGLPAALQAGDPLAFEGGEAALLRCVEELVTCIRISERDTLARLIC 512
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig174.4102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J936_9PHAE3.400e-4483.33Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D8LRD8_ECTSI4.210e-4483.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig174contigH-paniculata_contig174:4599..6624 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_002910.1
Exons2
Model size274
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929368.5542295-CDS-H-paniculata_contig174:4600..47891622929368.5542295-CDS-H-paniculata_contig174:4600..4789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig174 4601..4789 -
1691480833.1871824-CDS-H-paniculata_contig174:4600..47891691480833.1871824-CDS-H-paniculata_contig174:4600..4789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig174 4601..4789 -
1622929368.5715506-CDS-H-paniculata_contig174:6543..66241622929368.5715506-CDS-H-paniculata_contig174:6543..6624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig174 6544..6624 -
1691480833.196614-CDS-H-paniculata_contig174:6543..66241691480833.196614-CDS-H-paniculata_contig174:6543..6624Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig174 6544..6624 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig174.4102.1prot_H-paniculata_contig174.4102.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig174 4601..6624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig174.4102.1

>prot_H-paniculata_contig174.4102.1 ID=prot_H-paniculata_contig174.4102.1|Name=mRNA_H-paniculata_contig174.4102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp
CIEHLSHGRLKIDLRPNFHSWGNRRYQVLHVTNHVLSTLTQQGDQGLPAA
LQTNSPSRFEGGELALLECVQELVTCIRISERDTLARLIC
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mRNA from alignment at H-paniculata_contig174:4599..6624-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig174.4102.1 ID=mRNA_H-paniculata_contig174.4102.1|Name=mRNA_H-paniculata_contig174.4102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2026bp|location=Sequence derived from alignment at H-paniculata_contig174:4599..6624- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCATTGAGCACCTTAGCCATGGGCGCTTGAAGATCGACCTTCGCCCCAA
CTTCCATTCCTGGGGTAACCGTCGGTATCAGGTGTGTCTGTTTGTATTTA
GGGTGTGATTTTCTTTGATGCATGTTTCGATGAAGCAAAAGAGCAGCCGT
TATTATACCTAATTGAATCAGATAACATTAAAATTGTGGGTTGGTTAAGT
CACTACGTATGTTTTGTTTGGAAATATACATGAACGTTACCTTGAGCAGA
ACTTCGAGCGAACGAAAATCCACCAGACCGTTTCTCATATTGTAGCGAAC
ACGTGGATATCCTCACGTTTGCCGAAGACCCCGAGACCATCGACTTGTGC
CACATCTGTACGGAAAAGCATGCGGTGGGTTTTGCTGCTCCATGAGTATT
TTTTTTGTGTTTTTTTCACAACGTTTAGGTTCACGTTTACAGTCACGTAA
CGGACAGACACGCGTCGAGAAAAACAGGACGTTGGGTGATCATCATCGGT
CTTCACGTTTTGAAAGCATCGCCGTCGTATTCCCTCCCTCTTCTTCACTT
GAGGGATACTTGAGTTACACATGCTCGGCGGCTACGTGGTATGATCTTTC
AGCTTCACATGAGTACTACGTTCATCACTCTCGTATCTACCCATGGTTGC
GACCTATGTGTTTAGCCCTCACTTTTTCTTGTTTTTTTTGTGATGCCGGG
ATTCGAACACATGACCGTGAGGACGAGAATTGCGCAAGGTATCTATTGGT
GTCGCCTATGTGAAAATTAGGGCAACTGTCTTCGATAGATATTGATTTAC
AATTACCCCTTTTGACGTGTATCTAAGGTAGCCAAAACAACAGCTGTCTT
CAGTTAGTGGGTCGTGTTTTCCAACACGTGGTGTACGCTGTACGTGCTGT
AGACGAAGTAAAGGTAAGTACTGCCAGGATGTGTATCGTAGATGAACAAA
TACCACGGCTAGCTATTTCGTACTTTTCGTTGCACAAATCGATGGTGTTG
GGATATTTCTCTAACGTCAGTGTTATCCATGTCTTCTCTACAATACGAGC
AATGGCCTGATTAAGTTTCCCCCATGGGCAGGTGCTGCAGACCATGGCAA
AAATTGGAAGTATCGGAGTTGTAGACTGTTCAATTTTGACAGTCACACTT
GAAGCACATCCTTCGTATCTGGTTTAGATATGTGCTACATACAAATGAGA
TGTTATTTTCCATTTCCGTGGGTCGTTCGTCTCGGAACGGTTGGGAGAAT
CTTCTCCAGCCGCTGCGCTCAAGCTCTTTCTGTCATTTTTGTTCTCGGGT
GTCAAGGTCAACGAGTCGAGAAAATGGTAATTAGGTGGGAGTTATTTTGT
TGTACAATACTCGTTCATCATGTCATACCCTCATATGAGGCCTCTTTTTT
TCGCGCCGCACCGGTTTTGTTTCAACATGGACACACCAAATTTTCGTGTT
CGTTGCTGATCATGCCGCTTTGTGTGTGTGTGTGTGTGTGTGTGGTTTTA
GATACTGCTCTTCTCATGAAGGTATTTACACTCTCACCTATCTGCCGGTG
TTGTCTTACATGTGGTTTAATTCGTAGCTGTAACGTCGCGGCCACACTTG
CGCCGTCCTTGCTTTGTTTTCAACCCGTGCACAAAGCTCATCTGGCAGTA
ACCCAGTAGGCCCGCAGGTGTCGATGAAGATTCGTTTTTCAGAAATCACT
TGAGTGCAGAGTTGAGCTGTTCCCAAATGACGGCGACGATGACGACAACG
ACGATAACGACAACGACCGTACTGTATTATTGAAATAGTATACCCTTCTT
TGCCTGTGTTTTTTTGTCCGTGTTTTATGTTTCAGGTTCTTCACGTGACT
AATCATGTTCTTTCGACTCTGACGCAACAAGGAGATCAAGGCCTTCCGGC
CGCCTTGCAGACCAACAGCCCGTCCCGGTTTGAAGGTGGGGAACTCGCGC
TTCTTGAATGCGTGCAGGAGCTCGTTACGTGCATCAGGATCAGCGAGCGG
GATACGCTGGCACGGCTCATCTGCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig174:4599..6624-

>mRNA_H-paniculata_contig174.4102.1 ID=mRNA_H-paniculata_contig174.4102.1|Name=mRNA_H-paniculata_contig174.4102.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig174:4599..6624- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCATTGAGCACCTTAGCCATGGGCGCTTGAAGATCGACCTTCGCCCCAA
CTTCCATTCCTGGGGTAACCGTCGGTATCAGTGCATTGAGCACCTTAGCC
ATGGGCGCTTGAAGATCGACCTTCGCCCCAACTTCCATTCCTGGGGTAAC
CGTCGGTATCAGGTTCTTCACGTGACTAATCATGTTCTTTCGACTCTGAC
GCAACAAGGAGATCAAGGCCTTCCGGCCGCCTTGCAGACCAACAGCCCGT
CCCGGTTTGAAGGTGGGGAACTCGCGCTTCTTGAATGCGTGCAGGAGCTC
GTTACGTGCATCAGGATCAGCGAGCGGGATACGCTGGCACGGCTCATCTG
CGTTCTTCACGTGACTAATCATGTTCTTTCGACTCTGACGCAACAAGGAG
ATCAAGGCCTTCCGGCCGCCTTGCAGACCAACAGCCCGTCCCGGTTTGAA
GGTGGGGAACTCGCGCTTCTTGAATGCGTGCAGGAGCTCGTTACGTGCAT
CAGGATCAGCGAGCGGGATACGCTGGCACGGCTCATCTGC
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