mRNA_H-paniculata_contig17393.4101.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17393.4101.1
Unique NamemRNA_H-paniculata_contig17393.4101.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: D7FHQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHQ0_ECTSI)

HSP 1 Score: 178 bits (451), Expect = 7.970e-54
Identity = 87/106 (82.08%), Postives = 96/106 (90.57%), Query Frame = 1 
Query:    1 QVEPDVRVLGNKMKRDDWTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIENAMPIEVKYKAPKSGKSLLAKVAAKGSKIRGFGRG 318
            Q+EPD RVLG+K+KRDDWT+EQDMVFEHAMAEFEETD LRWLKVASLLPGK+HEDVR+RYQRLVYDVHKIENA+P++VKYKAPK GKSLLAKVAAK       GRG
Sbjct:   83 QMEPDARVLGSKIKRDDWTFEQDMVFEHAMAEFEETDSLRWLKVASLLPGKSHEDVRHRYQRLVYDVHKIENAVPMDVKYKAPKGGKSLLAKVAAKSGSASSRGRG 188
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A6H5K4R8_9PHAE (Myb-like domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4R8_9PHAE)

HSP 1 Score: 174 bits (441), Expect = 1.750e-49
Identity = 85/104 (81.73%), Postives = 94/104 (90.38%), Query Frame = 1 
Query:    4 VEPDVRVLGNKMKRDDWTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIENAMPIEVKYKAPKSGKSLLAKVAAKGSKIRGFGR 315
            +EPD RVLG+K+KRDDWT+EQDMVFEHAMAEFEETD LRWLKVASLLPGK+HEDVR+RYQRLVYDVHKIENA+P++VKYKAPK GKSLLAKVAAK       GR
Sbjct:   49 MEPDARVLGSKIKRDDWTFEQDMVFEHAMAEFEETDSLRWLKVASLLPGKSHEDVRHRYQRLVYDVHKIENAVPMDVKYKAPKGGKSLLAKVAAKSGSASSRGR 152
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A836CHK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHK7_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.360e-13
Identity = 37/73 (50.68%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   52 WTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIENAMPIEVKYKAP-KSGKSL 267
            WT+E++ VFE+ ++ F+E D  RW K+ASLLP K+ EDVR RYQ+L+YDV +IE  M + ++YK   + G+SL
Sbjct:   79 WTFEEETVFENGLSTFDEDDLERWNKIASLLPEKSPEDVRRRYQKLMYDVTRIEAGMQVSLEYKVKARLGQSL 151
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A7S2HE62_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HE62_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 7.510e-11
Identity = 30/76 (39.47%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   16 VRVLGNKMKRDDWTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIENAMPIEVKYK 243
            V  L  ++  D W+ E++++FE ++A F+E DP RW K+ASL P KN ++V  RYQ L++D+++I+    + V+ K
Sbjct:   71 VHSLSEELTGDLWSLEEELIFEQSIAVFQEDDPKRWEKIASLFPKKNAQEVELRYQNLLFDINRIQLGEHVLVRVK 146
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A7S4D6G4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6G4_HETAK)

HSP 1 Score: 67.0 bits (162), Expect = 3.090e-10
Identity = 29/68 (42.65%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:   52 WTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIENAMPIEVKYKAPKS 255
            WT E+D++FEH +A F E D  RW K+  LLP K  + +R RYQ+L++DV +IE    + + +K  K+
Sbjct:   65 WTKEEDVMFEHGVATFNEGDEERWAKIQKLLPSKTEDQIRKRYQKLLFDVSRIECGHQVVITFKPSKN 132
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A1D1ZEK9_9ARAE (Transcription factor MYB1R1 (Fragment) n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1ZEK9_9ARAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.290e-9
Identity = 34/65 (52.31%), Postives = 42/65 (64.62%), Query Frame = 1 
Query:   19 RVLGNKMKRDDWTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIE 213
            R LGN      WT+E++  FE+A+AE EE  P RW KVAS++PGK  EDV+  YQ L  DV  IE
Sbjct:   27 RNLGNY-----WTHEENKRFENALAEIEERTPDRWEKVASMIPGKTAEDVKQHYQELEVDVSHIE 86
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A835Q9A4_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q9A4_VANPL)

HSP 1 Score: 62.8 bits (151), Expect = 8.320e-9
Identity = 27/64 (42.19%), Postives = 45/64 (70.31%), Query Frame = 1 
Query:   22 VLGNKMKRDDWTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIE 213
            ++GN    ++W+ +++ +FE+A+A F+E  P RW KVA+++PGK  +DV+N Y+ L  DV  IE
Sbjct:   23 IIGNNKSSENWSQQENKLFENALAHFDEHTPNRWEKVAAMIPGKTVDDVKNHYEVLKEDVSCIE 86
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A5D6XTB4_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XTB4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 2.240e-8
Identity = 27/56 (48.21%), Postives = 40/56 (71.43%), Query Frame = 1 
Query:   52 WTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIENA 219
            WT+E+D +FE+A+A++    P  W K+A+ LPGK  +D RNRY++LV DV  IE +
Sbjct:  225 WTFEEDKIFENALAKWSSDKPYSWPKIATALPGKTAKDARNRYEKLVGDVAIIETS 280
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A1S2YTX2_CICAR (transcription factor SRM1-like n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YTX2_CICAR)

HSP 1 Score: 59.7 bits (143), Expect = 1.020e-7
Identity = 34/85 (40.00%), Postives = 55/85 (64.71%), Query Frame = 1 
Query:   49 DWTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIENAMPIEVKYKA-PKSGKSLLA-KVAAKGSK 297
            +W+ E+D+ FE+A+A + E D  RW K+A+ +PGK  ++++  Y+ LVYD++ IE+   I   YK  P+  K+  A K  +KGSK
Sbjct:   13 EWSREEDIAFENALAIYPENDVNRWEKIAADVPGKTLQEIKYHYEVLVYDINLIESGFVILPCYKLFPERSKNPAAGKKESKGSK 97
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BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Match: A0A314XZK2_PRUYE (Transcription factor DIVARICATA n=7 Tax=Prunus TaxID=3754 RepID=A0A314XZK2_PRUYE)

HSP 1 Score: 58.2 bits (139), Expect = 3.550e-7
Identity = 29/56 (51.79%), Postives = 39/56 (69.64%), Query Frame = 1 
Query:   49 DWTYEQDMVFEHAMAEFEETDPLRWLKVASLLPGKNHEDVRNRYQRLVYDVHKIEN 216
            +WT E++  FE A+A F+E  P RWLKVAS++PGK   DV  +YQ L  DV +IE+
Sbjct:   24 EWTKEENKKFESALAMFDEKTPDRWLKVASMIPGKTVIDVIKQYQELEEDVSEIES 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17393.4101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHQ0_ECTSI7.970e-5482.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4R8_9PHAE1.750e-4981.73Myb-like domain-containing protein n=1 Tax=Ectocar... [more]
A0A836CHK7_9STRA1.360e-1350.68Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2HE62_9STRA7.510e-1139.47Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S4D6G4_HETAK3.090e-1042.65Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A1D1ZEK9_9ARAE1.290e-952.31Transcription factor MYB1R1 (Fragment) n=2 Tax=Ant... [more]
A0A835Q9A4_VANPL8.320e-942.19Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
A0A5D6XTB4_9STRA2.240e-848.21Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1S2YTX2_CICAR1.020e-740.00transcription factor SRM1-like n=1 Tax=Cicer ariet... [more]
A0A314XZK2_PRUYE3.550e-751.79Transcription factor DIVARICATA n=7 Tax=Prunus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17393contigH-paniculata_contig17393:3293..5357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score179.1
Seed ortholog evalue1.5e-42
Seed eggNOG ortholog2880.D7FHQ0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
EggNOG OGs2E09X@1,2S7QZ@2759
Ec32 ortholog descriptionSANT/Myb domain transcription factor
Ec32 orthologEc-07_006270.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size447
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17393.4101.1prot_H-paniculata_contig17393.4101.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17393 3293..5357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929368.422339-CDS-H-paniculata_contig17393:3292..35141622929368.422339-CDS-H-paniculata_contig17393:3292..3514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17393 3293..3514 -
1691480833.1364853-CDS-H-paniculata_contig17393:3292..35141691480833.1364853-CDS-H-paniculata_contig17393:3292..3514Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17393 3293..3514 -
1622929368.4368527-CDS-H-paniculata_contig17393:3915..40321622929368.4368527-CDS-H-paniculata_contig17393:3915..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17393 3916..4032 -
1691480833.1456409-CDS-H-paniculata_contig17393:3915..40321691480833.1456409-CDS-H-paniculata_contig17393:3915..4032Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17393 3916..4032 -
1622929368.4488451-CDS-H-paniculata_contig17393:5249..53571622929368.4488451-CDS-H-paniculata_contig17393:5249..5357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17393 5250..5357 -
1691480833.1531303-CDS-H-paniculata_contig17393:5249..53571691480833.1531303-CDS-H-paniculata_contig17393:5249..5357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17393 5250..5357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17393.4101.1

>prot_H-paniculata_contig17393.4101.1 ID=prot_H-paniculata_contig17393.4101.1|Name=mRNA_H-paniculata_contig17393.4101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=149bp
QVEPDVRVLGNKMKRDDWTYEQDMVFEHAMAEFEETDPLRWLKVASLLPG
KNHEDVRNRYQRLVYDVHKIENAMPIEVKYKAPKSGKSLLAKVAAKGSKI
RGFGRGGGFVGGGGRGGSGGGEAGDMGMGGGRMLKMRGQVGRPKEKAGG
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mRNA from alignment at H-paniculata_contig17393:3293..5357-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17393.4101.1 ID=mRNA_H-paniculata_contig17393.4101.1|Name=mRNA_H-paniculata_contig17393.4101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2065bp|location=Sequence derived from alignment at H-paniculata_contig17393:3293..5357- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGAGCCGGATGTCCGCGTCCTGGGAAATAAAATGAAACGCGACGA
CTGGACGTACGAACAGGACATGGTGTTTGAGCACGCCATGGCAGAATTTG
AGGAAACGGTAAGAGGAATTGCTTCGTTCGTTGTAATTTGTTGCTAGCAG
TACGGGTCAGCGCACGAATATGTCCGTTCATGCTTCTTCGCCAACAGCTG
GAAAACAAGGGTGGAGAGAGCCGCTACAACACATTCGAGAGATGGCCCAA
CGTCTTCTTTGTCGTTAACGGGTTCGATCAAGCAGGACACATATTTCCCT
TTTTCACGCCCTAAGTGAATTGTGTTCCAAATTAATTACCCTGCATGGAG
TCTTGTGTGTGTTATCGAGTTATTGATGTTGTTTTCGATGGCATCGATAT
ATATATATATATATTTTTTTTTTTGCGTAGTACGTACGTATCTGTAACCT
TTGTTTTTCGGTAGACTGTTCACTCGCCGGACATGTCACGAATACTTGCA
AATGGTTGATCACAACAAACTGAAAGTATTCGCCTGAGATTCAGAATGAG
TTCGTGTGTTCTACATCGTGCGGATCATCCACGACTGCTAATAATACTCA
TAAAACGATTGAACCGGGGTGGGGTGGGTACTTTATTCTATGCGTCCGCT
CATTCTGTCACCCAGGCGAATGCTTTTTTTTTTTTTTGTGAAAACCATTT
GCAAGTATTCGTGACATGTCCGGGGGGAGAAAATGTTGAACTGGTTCGAA
ATTCGCCCGTGATGAATCGTGATTTTTTATAAGTTATATCTGCTTCTTTT
ATATGTTTTTTAGTTCATGTAAAAATGTTTTTTTTTTTTCTTTTTCTTTT
TTTTTCGAATAGTTGTTTCTTTTTTCTTGCCTTTTTGTTGGCTTTGTCCT
TCATACGGTAGAATATATACCTATCCAATGAGCATTTATGATTTCCTATA
ACACGCTAGATGGAATTCTTGAAGGGTAAATGGCAGTGTCAAATTTATTT
TGTCAGGTGTTGAGCGAACGGTTATAAATTTGTCATTTTCTAGAGTTTTA
CGATGTAGTAGTACATATATGTCGTTGATTGATTGTATTAGACTACTACG
GCCCGACAGACAATATTTCAAGTGTAACGAGTTATTTCGGGTTTATTAGA
CGTGGAGAAGATCGTAGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTTTTAGATAATTGTATGTTTGTTCGTTTGTTAGTTCA
CTTGCAGGATCCGTCGATATGTCATGCATATATACATGTCCATTTTTTGT
CTCTTTTTTCCTGCTTCGACTCTAGGATCCGTTGAGATGGCTGAAAGTGG
CCTCCTTGCTGCCCGGCAAAAATCACGAAGACGTGAGAAATCGATACCAG
AGGCTCGTCTACGATGTCCACAAGATCGAGAACGCTATGCCGGTAAGTCA
CCCCACACAGCCACAGCAAGCAGTGCACCCGCATATATGTGGTCGCTCAG
GAATAGTATGTTTTAACTTGTATATACGTAGCTTCTAGAAGTGTGTACTC
GAATGGCTTCTAAACATGAATCAGTTTCGATATTTGCGAGCGTAGCAAGT
CACTGCAGGTACAATGAATCTATTATACATCTGAGTTTTTAGAGCTCTAC
TAACCGTGGCAAGTGATTAGGGCTGACTCGAGAAAGACACACTCCCTCGT
CCCCTCCTGCCCCCCCCCCCCTCCCCCTCCTTGTTGTCCTGTCTTTTCGC
CCCCTATCACACCCCACCCTACCCTGGACCAAACCAAAACACGCCTCCAA
TTTACCACTGGTTTACTTGAAAAACGGATGTGAAAAATGACAGATAGAAG
TGAAGTACAAAGCTCCCAAGTCAGGCAAATCATTGTTGGCTAAGGTGGCC
GCCAAGGGCAGCAAGATAAGGGGGTTCGGGAGGGGTGGTGGCTTCGTGGG
GGGAGGGGGCAGAGGAGGTAGCGGGGGGGGCGAGGCAGGGGATATGGGGA
TGGGGGGAGGGAGGATGCTGAAGATGAGAGGACAGGTCGGCAGGCCTAAG
GAGAAGGCCGGTGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig17393:3293..5357-

>mRNA_H-paniculata_contig17393.4101.1 ID=mRNA_H-paniculata_contig17393.4101.1|Name=mRNA_H-paniculata_contig17393.4101.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=894bp|location=Sequence derived from alignment at H-paniculata_contig17393:3293..5357- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGAGCCGGATGTCCGCGTCCTGGGAAATAAAATGAAACGCGACGA
CTGGACGTACGAACAGGACATGGTGTTTGAGCACGCCATGGCAGAATTTG
AGGAAACGCAGGTGGAGCCGGATGTCCGCGTCCTGGGAAATAAAATGAAA
CGCGACGACTGGACGTACGAACAGGACATGGTGTTTGAGCACGCCATGGC
AGAATTTGAGGAAACGGATCCGTTGAGATGGCTGAAAGTGGCCTCCTTGC
TGCCCGGCAAAAATCACGAAGACGTGAGAAATCGATACCAGAGGCTCGTC
TACGATGTCCACAAGATCGAGAACGCTATGCCGGATCCGTTGAGATGGCT
GAAAGTGGCCTCCTTGCTGCCCGGCAAAAATCACGAAGACGTGAGAAATC
GATACCAGAGGCTCGTCTACGATGTCCACAAGATCGAGAACGCTATGCCG
ATAGAAGTGAAGTACAAAGCTCCCAAGTCAGGCAAATCATTGTTGGCTAA
GGTGGCCGCCAAGGGCAGCAAGATAAGGGGGTTCGGGAGGGGTGGTGGCT
TCGTGGGGGGAGGGGGCAGAGGAGGTAGCGGGGGGGGCGAGGCAGGGGAT
ATGGGGATGGGGGGAGGGAGGATGCTGAAGATGAGAGGACAGGTCGGCAG
GCCTAAGGAGAAGGCCGGTGGGATAGAAGTGAAGTACAAAGCTCCCAAGT
CAGGCAAATCATTGTTGGCTAAGGTGGCCGCCAAGGGCAGCAAGATAAGG
GGGTTCGGGAGGGGTGGTGGCTTCGTGGGGGGAGGGGGCAGAGGAGGTAG
CGGGGGGGGCGAGGCAGGGGATATGGGGATGGGGGGAGGGAGGATGCTGA
AGATGAGAGGACAGGTCGGCAGGCCTAAGGAGAAGGCCGGTGGG
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