mRNA_H-paniculata_contig1739.4100.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1739.4100.1 vs. uniprot
Match: A0A6H5KXW1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXW1_9PHAE) HSP 1 Score: 346 bits (887), Expect = 2.870e-95 Identity = 321/967 (33.20%), Postives = 432/967 (44.67%), Query Frame = 1
Query: 115 LAKVSQEISIAQTEVDALKNSLSLHSNDRA--SKAYAGL-DPQVVLQLFLSAAQQLDRLREKEIELLRLERCFADPGKWGLRASPAAAGPKLSSPPVPSHPTHVGLDTDSRDHGAHSCAAARKDDGRESSRRCSALAGAEGKVVLSLSDVSTWVSCRSFLDEMGVRNVRFVDAPVPRAELSIVVNDSHRFQWRDDQPVVSEASETKSIAPEIPTKEGPHRRSTSPYRPTCSRVRAGLAAYLNASIRPVAGSEWVIP-------------GRNANEHADFLSVLV----LRGNRLPGAAPQAPSESRAGAGTNARYFQGEAPTAALCLSAAVANGTPSGGLRVVLELVPPIPLGA--------------------SRPTVRAIRGGGAPGVDDQSV--LYRAIASLVAANARSPCSKPVVVLTDLQGVWKLMWLG--RGGGGSGSEASSSGHPMRDASPTSPNMRGGSGGXGGVAIGGTNSPNVDVFVWRLGAADAVSVLRSILAEESTTWDGEVS-AVARGDGVG-------------------LGS------IWANFRSGG----------------GPMASLRNRY-----NLHDHHSTAGVDSGGGDT-----------------------GVRTVSPSPISYMEHLRS--GTCFSAQILHGRGQQSGG------EMVRERQTSFASAPGRAA-----AAEGFGGGTSSSFLELLHSG----QAVSSIAGEH------REHRYSSNGHSSSNXXXXXXXXXXXXXANSYAAGPSGMVN--RNGFLVPPPVTNPL---------VYEPTVLQHLIPFVAGDGFLFVAGVCKGWREAWGMSRPQETSLDAAVQSPSRLGWARASGCTWSATVCARAAGGGYFATLRYXXXXXXXXXXXXXXXXAAETIMPVNTMIEWAARRTPSPGPA--PNSP--PMRLEILQWARLNGCPWDESTTSEAARVGN 2559
L +S EI A EV ++ +LS + A S +Y GL D +L+L L A +QL+ LREKE+ +L+ A+ + P PS T V + G +RR LSDV+TW+SCRS LD MGV ++R V + VPRA+LS++V+ H FQW A+ +S+A + + YR + +AGL AYLNA I P +EWVIP G + N +DFLSV RG R A + + G GT R +G P+AA+CLS A++ G P+ GLRV+LE+V P A R + R A G Q LYRAI +LVAAN RSP ++PVVVLTDLQ WKL+WLG R EA+++ A+ T+ + VD+FVWR+ DA+SV+RS+L EE+ WDG+VS A +GD LG WAN + GPM SLR+R+ N HS GG G+ + S P++ LR + F+ L G+ +GG E+ +F++ A+ AAE G ++ + L LH G + AG+ R SNG+ S N+ G N + F P T PL + +PT+L+HLI F A +GFLFVAGV + WR+AWG+ RP ET +DAAVQSPSRLGWARASG W +VCARAA GG+ ATLRY + ++PV+TMI+WAA + S + + P P RLE+L+W R NGCPWDE+TTSEAAR GN
Sbjct: 2 LRLLSGEIDDAVREVKLIEEALSGSAGCDAGGSGSYLGLTDRGALLELLLCARRQLNLLREKEVAILK-----------SSAATEGRSDQHFDEEPSPSTATGV----------------CQPGGGVSDTRR--------------LSDVTTWMSCRSLLDSMGVGDIRLVHSAVPRAKLSVIVDALHLFQWPG-------AAAARSLA------------AGARYRAAGDQEQAGLHAYLNAVIPPGDANEWVIPVVGGQDPGAAAESGGHDNNSSDFLSVPCDGSWRRGRRSCQARDGRAAATEGGGGTQ-RAVRGGVPSAAICLSEAISCGAPASGLRVLLEVVLPQETSAIANGTAIASCKNGEDNGCRRGRGSCRGALSPRAAGAGRQQATGLYRAIGALVAANRRSPLTRPVVVLTDLQASWKLLWLGGARSDLAPAGEAAAAETAFHHAAATT-----------------VDGDEVDIFVWRMSPRDAISVVRSMLDEEAVGWDGQVSWAPRQGDAAXXXXXXXXXXXXXXXXXXXTLGDDGFHALAWANEGAAXXXXXXXXXXVAAGESKGPMESLRDRHLVGRRNFGRPHSCP--RHGGSRAXXXXXXXXXXXXXXXXXVEAYMGGIASTSSPPLAMEMALRREHASSFTGNSLPGQWTATGGSFGEGGELPPRECRAFSAGVQHASDGLNRAAEMMGRRSTFANLYPLHGGVGGGNSXXXXAGDEGYSVDDRFRGRLSNGNDHSTNGGATPREHRGGSFNNDGRGXXXXXNTRQRSFTASSPRTRPLSSPSAPVNPLADPTILRHLISFAARNGFLFVAGVSRSWRDAWGVERPPETEVDAAVQSPSRLGWARASGLGWGPSVCARAASGGHLATLRYARALGCPWDWTCCALATTKALVPVSTMIQWAASQPASSSSSVVADDPLRPKRLEVLKWCRENGCPWDEATTSEAAREGN 888 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1739.4100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1739.4100.1 >prot_H-paniculata_contig1739.4100.1 ID=prot_H-paniculata_contig1739.4100.1|Name=mRNA_H-paniculata_contig1739.4100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1063bp MARGESTLANHALVSNRLAKVSQEISIAQTEVDALKNSLSLHSNDRASKAback to top mRNA from alignment at H-paniculata_contig1739:5588..17498- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1739.4100.1 ID=mRNA_H-paniculata_contig1739.4100.1|Name=mRNA_H-paniculata_contig1739.4100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11911bp|location=Sequence derived from alignment at H-paniculata_contig1739:5588..17498- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1739:5588..17498- >mRNA_H-paniculata_contig1739.4100.1 ID=mRNA_H-paniculata_contig1739.4100.1|Name=mRNA_H-paniculata_contig1739.4100.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=6378bp|location=Sequence derived from alignment at H-paniculata_contig1739:5588..17498- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |