mRNA_H-paniculata_contig1737.4093.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1737.4093.1
Unique NamemRNA_H-paniculata_contig1737.4093.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1737.4093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1737contigH-paniculata_contig1737:5478..6415 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size940
Cds size873
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929367.3449805-UTR-H-paniculata_contig1737:5477..55421622929367.3449805-UTR-H-paniculata_contig1737:5477..5542Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1737 5478..5542 +
1691480832.6501803-UTR-H-paniculata_contig1737:5477..55421691480832.6501803-UTR-H-paniculata_contig1737:5477..5542Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1737 5478..5542 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929367.360054-CDS-H-paniculata_contig1737:5542..64151622929367.360054-CDS-H-paniculata_contig1737:5542..6415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1737 5543..6415 +
1691480832.6619937-CDS-H-paniculata_contig1737:5542..64151691480832.6619937-CDS-H-paniculata_contig1737:5542..6415Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1737 5543..6415 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1737.4093.1prot_H-paniculata_contig1737.4093.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1737 5543..6415 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1737.4093.1

>prot_H-paniculata_contig1737.4093.1 ID=prot_H-paniculata_contig1737.4093.1|Name=mRNA_H-paniculata_contig1737.4093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=291bp
MAEREDPGKALLRMLHAGQAPAPPSHAPHPSGSSMMLPSAIPTVDVRGAT
AGRGNYDARPPSAPSNHGYFLPHPRAAVLPTPNTTPSSSAGADLLRMLQQ
GSGPHPPRAVERARTSSQAQNSQQHQYQQQQQQHYAFPLPSNSTSRSIAA
EQERILKTFLSIGDSTINPNSNNLASVSRAPATAAAPATSTLLPDNPRIT
TPASSLLVSPPSTPPNRRAYTSTAAAAAAATYGSTSGGGRGGKGKNKLGR
GKEQGRGRDSGHGGRHGGGGGGGGTTPGGRSESRSKGQGRG
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mRNA from alignment at H-paniculata_contig1737:5478..6415+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1737.4093.1 ID=mRNA_H-paniculata_contig1737.4093.1|Name=mRNA_H-paniculata_contig1737.4093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=938bp|location=Sequence derived from alignment at H-paniculata_contig1737:5478..6415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGTAGAACTAGCTCATTCCATCTCCCCTGTCCGAACTCTAACGCACCAAA
GAATAACAAATAGTTATGGCAGAGCGAGAAGACCCCGGAAAGGCTCTCCT
GAGGATGCTCCACGCAGGCCAAGCGCCCGCGCCTCCTTCGCACGCTCCTC
ATCCCTCGGGTTCTTCAATGATGCTGCCTTCGGCCATACCAACTGTAGAT
GTGCGAGGTGCCACCGCTGGGCGTGGAAATTATGACGCCAGGCCGCCGAG
TGCCCCTTCCAACCACGGGTACTTCTTACCTCACCCGAGAGCTGCTGTCC
TACCAACGCCAAACACTACCCCTTCCAGTTCGGCAGGCGCTGACCTGTTG
CGGATGCTTCAACAGGGTAGCGGTCCTCATCCTCCGCGTGCTGTTGAACG
AGCACGAACATCATCCCAAGCCCAAAACTCCCAACAACACCAGTACCAAC
AACAACAACAGCAACACTACGCCTTCCCGCTTCCCTCCAATTCCACGTCG
CGAAGCATTGCGGCAGAGCAGGAGCGGATATTGAAGACCTTCCTGTCCAT
TGGGGACAGCACCATCAATCCCAACAGTAATAATCTTGCTTCAGTTTCCC
GAGCTCCAGCTACCGCGGCCGCCCCAGCAACATCAACCCTGCTGCCGGAT
AATCCACGGATCACAACCCCTGCAAGCTCGCTGCTGGTCTCGCCGCCTTC
GACTCCTCCCAACCGCAGAGCATACACGTCCACCGCAGCAGCGGCAGCGG
CGGCGACGTACGGTAGCACTAGTGGAGGAGGGCGTGGTGGCAAAGGAAAA
AACAAACTGGGCCGTGGGAAAGAGCAAGGGAGGGGGAGAGACAGCGGTCA
CGGCGGGCGACACGGCGGCGGTGGCGGCGGTGGCGGGACAACACCTGGAG
GGCGCTCCGAGAGCCGCAGCAAAGGACAAGGTCGAGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1737:5478..6415+

>mRNA_H-paniculata_contig1737.4093.1 ID=mRNA_H-paniculata_contig1737.4093.1|Name=mRNA_H-paniculata_contig1737.4093.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1746bp|location=Sequence derived from alignment at H-paniculata_contig1737:5478..6415+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAGAGCGAGAAGACCCCGGAAAGGCTCTCCTGAGGATGCTCCACGC
AGGCCAAGCGCCCGCGCCTCCTTCGCACGCTCCTCATCCCTCGGGTTCTT
CAATGATGCTGCCTTCGGCCATACCAACTGTAGATGTGCGAGGTGCCACC
GCTGGGCGTGGAAATTATGACGCCAGGCCGCCGAGTGCCCCTTCCAACCA
CGGGTACTTCTTACCTCACCCGAGAGCTGCTGTCCTACCAACGCCAAACA
CTACCCCTTCCAGTTCGGCAGGCGCTGACCTGTTGCGGATGCTTCAACAG
GGTAGCGGTCCTCATCCTCCGCGTGCTGTTGAACGAGCACGAACATCATC
CCAAGCCCAAAACTCCCAACAACACCAGTACCAACAACAACAACAGCAAC
ACTACGCCTTCCCGCTTCCCTCCAATTCCACGTCGCGAAGCATTGCGGCA
GAGCAGGAGCGGATATTGAAGACCTTCCTGTCCATTGGGGACAGCACCAT
CAATCCCAACAGTAATAATCTTGCTTCAGTTTCCCGAGCTCCAGCTACCG
CGGCCGCCCCAGCAACATCAACCCTGCTGCCGGATAATCCACGGATCACA
ACCCCTGCAAGCTCGCTGCTGGTCTCGCCGCCTTCGACTCCTCCCAACCG
CAGAGCATACACGTCCACCGCAGCAGCGGCAGCGGCGGCGACGTACGGTA
GCACTAGTGGAGGAGGGCGTGGTGGCAAAGGAAAAAACAAACTGGGCCGT
GGGAAAGAGCAAGGGAGGGGGAGAGACAGCGGTCACGGCGGGCGACACGG
CGGCGGTGGCGGCGGTGGCGGGACAACACCTGGAGGGCGCTCCGAGAGCC
GCAGCAAAGGACAAGGTCGAGGGATGGCAGAGCGAGAAGACCCCGGAAAG
GCTCTCCTGAGGATGCTCCACGCAGGCCAAGCGCCCGCGCCTCCTTCGCA
CGCTCCTCATCCCTCGGGTTCTTCAATGATGCTGCCTTCGGCCATACCAA
CTGTAGATGTGCGAGGTGCCACCGCTGGGCGTGGAAATTATGACGCCAGG
CCGCCGAGTGCCCCTTCCAACCACGGGTACTTCTTACCTCACCCGAGAGC
TGCTGTCCTACCAACGCCAAACACTACCCCTTCCAGTTCGGCAGGCGCTG
ACCTGTTGCGGATGCTTCAACAGGGTAGCGGTCCTCATCCTCCGCGTGCT
GTTGAACGAGCACGAACATCATCCCAAGCCCAAAACTCCCAACAACACCA
GTACCAACAACAACAACAGCAACACTACGCCTTCCCGCTTCCCTCCAATT
CCACGTCGCGAAGCATTGCGGCAGAGCAGGAGCGGATATTGAAGACCTTC
CTGTCCATTGGGGACAGCACCATCAATCCCAACAGTAATAATCTTGCTTC
AGTTTCCCGAGCTCCAGCTACCGCGGCCGCCCCAGCAACATCAACCCTGC
TGCCGGATAATCCACGGATCACAACCCCTGCAAGCTCGCTGCTGGTCTCG
CCGCCTTCGACTCCTCCCAACCGCAGAGCATACACGTCCACCGCAGCAGC
GGCAGCGGCGGCGACGTACGGTAGCACTAGTGGAGGAGGGCGTGGTGGCA
AAGGAAAAAACAAACTGGGCCGTGGGAAAGAGCAAGGGAGGGGGAGAGAC
AGCGGTCACGGCGGGCGACACGGCGGCGGTGGCGGCGGTGGCGGGACAAC
ACCTGGAGGGCGCTCCGAGAGCCGCAGCAAAGGACAAGGTCGAGGG
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