mRNA_H-paniculata_contig17363.4092.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17363.4092.1
Unique NamemRNA_H-paniculata_contig17363.4092.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17363.4092.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17363contigH-paniculata_contig17363:3086..3810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929367.2949924-CDS-H-paniculata_contig17363:3085..32421622929367.2949924-CDS-H-paniculata_contig17363:3085..3242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17363 3086..3242 -
1691480832.6252167-CDS-H-paniculata_contig17363:3085..32421691480832.6252167-CDS-H-paniculata_contig17363:3085..3242Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17363 3086..3242 -
1622929367.3068037-CDS-H-paniculata_contig17363:3472..38101622929367.3068037-CDS-H-paniculata_contig17363:3472..3810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17363 3473..3810 -
1691480832.6345377-CDS-H-paniculata_contig17363:3472..38101691480832.6345377-CDS-H-paniculata_contig17363:3472..3810Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17363 3473..3810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17363.4092.1prot_H-paniculata_contig17363.4092.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17363 3086..3810 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17363.4092.1

>prot_H-paniculata_contig17363.4092.1 ID=prot_H-paniculata_contig17363.4092.1|Name=mRNA_H-paniculata_contig17363.4092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=165bp
LEALQYTRARGCPWDKRTSWTAARGGHLEMLQWCRVNDCSWNKNTCSEVA
RGGHLEVLRWCRANDCPWNHNACSYATGGSHLEVLKRYRANSCFWNGEAC
CVASEGHLEVLQWCKTYGCPWDERMRLEAAGEDNVEVLEWCRTNGCPWNK
KTCYEAATSGHWRC*
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mRNA from alignment at H-paniculata_contig17363:3086..3810-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17363.4092.1 ID=mRNA_H-paniculata_contig17363.4092.1|Name=mRNA_H-paniculata_contig17363.4092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=725bp|location=Sequence derived from alignment at H-paniculata_contig17363:3086..3810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGGCCCTACAGTATACTCGAGCTAGAGGTTGTCCCTGGGATAAGAG
GACGTCTTGGACAGCTGCTAGGGGTGGGCATCTGGAGATGTTGCAATGGT
GTAGGGTTAACGACTGTTCCTGGAATAAGAACACGTGCTCGGAGGTCGCT
AGAGGGGGTCATCTAGAAGTGTTGAGATGGTGCCGGGCTAATGATTGTCC
CTGGAATCACAACGCGTGCTCGTACGCCACTGGAGGGAGTCATCTGGAGG
TGTTAAAAAGGTATAGGGCCAATAGCTGTTTTTGGAATGGAGAAGCATGC
TGTGTTGCGTCGGAGGGCCACCTGGAAGTGTTGCAATGGTCCAGGGCTAA
TTGATGTCCTTAGGATGAGGAAACGTGCTCTGAGGCCGCTGGAATGGATG
ATGTTGATATATTGCGGTGATGCTGGACTAACGAATACCTTTAGGATAAG
AGGACGTGTGAGAACGCCGGGAATAAGTTATCTCGAGATGTTGCAGTGGT
GCAGAGCTAACGACTGTCCCTGGGATGATGGCACGTGTTCAGCTGCTGCA
CGTTGGGGCCATCTGGAGGTGCAAGACTTACGGGTGTCCCTGGGATGAGA
GAATGCGCCTCGAAGCTGCTGGTGAGGATAATGTAGAAGTATTGGAGTGG
TGCAGAACTAACGGTTGTCCCTGGAATAAGAAGACGTGCTATGAAGCTGC
TACCAGCGGGCATTGGAGGTGTTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17363:3086..3810-

>mRNA_H-paniculata_contig17363.4092.1 ID=mRNA_H-paniculata_contig17363.4092.1|Name=mRNA_H-paniculata_contig17363.4092.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at H-paniculata_contig17363:3086..3810- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGAGGCCCTACAGTATACTCGAGCTAGAGGTTGTCCCTGGGATAAGAG
GACGTCTTGGACAGCTGCTAGGGGTGGGCATCTGGAGATGTTGCAATGGT
GTAGGGTTAACGACTGTTCCTGGAATAAGAACACGTGCTCGGAGGTCGCT
AGAGGGGGTCATCTAGAAGTGTTGAGATGGTGCCGGGCTAATGATTGTCC
CTGGAATCACAACGCGTGCTCGTACGCCACTGGAGGGAGTCATCTGGAGG
TGTTAAAAAGGTATAGGGCCAATAGCTGTTTTTGGAATGGAGAAGCATGC
TGTGTTGCGTCGGAGGGCCACCTGGAAGTGTTGCAATGTTGGAGGCCCTA
CAGTATACTCGAGCTAGAGGTTGTCCCTGGGATAAGAGGACGTCTTGGAC
AGCTGCTAGGGGTGGGCATCTGGAGATGTTGCAATGGTGTAGGGTTAACG
ACTGTTCCTGGAATAAGAACACGTGCTCGGAGGTCGCTAGAGGGGGTCAT
CTAGAAGTGTTGAGATGGTGCCGGGCTAATGATTGTCCCTGGAATCACAA
CGCGTGCTCGTACGCCACTGGAGGGAGTCATCTGGAGGTGTTAAAAAGGT
ATAGGGCCAATAGCTGTTTTTGGAATGGAGAAGCATGCTGTGTTGCGTCG
GAGGGCCACCTGGAAGTGTTGCAATGGTGCAAGACTTACGGGTGTCCCTG
GGATGAGAGAATGCGCCTCGAAGCTGCTGGTGAGGATAATGTAGAAGTAT
TGGAGTGGTGCAGAACTAACGGTTGTCCCTGGAATAAGAAGACGTGCTAT
GAAGCTGCTACCAGCGGGCATTGGAGGTGTTGAGTGCAAGACTTACGGGT
GTCCCTGGGATGAGAGAATGCGCCTCGAAGCTGCTGGTGAGGATAATGTA
GAAGTATTGGAGTGGTGCAGAACTAACGGTTGTCCCTGGAATAAGAAGAC
GTGCTATGAAGCTGCTACCAGCGGGCATTGGAGGTGTTGA
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