mRNA_H-paniculata_contig17355.4088.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: A0A6H5JZI7_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZI7_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.510e-23 Identity = 59/118 (50.00%), Postives = 73/118 (61.86%), Query Frame = 3
Query: 6 YAQTLTNAQNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNPTGNYLGQYEEQI 359
+A+ LT AQ LFHS +E R G+GENL++C +D+ CYS AM+G Y EV V Y GHATQILWK T++VGC V C + Y LVC Y+P GNY GQYEEQ+
Sbjct: 273 HAERLT-AQCSSNLFHSTQEQRYGYGENLYMCWGSDS---CYSHERAMEGLYYDEVQSDSVLQYGGHATQILWKSTEQVGCVVARCT----NGGTPYMFLVCQYDPPGNYGGQYEEQV 382
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: D8LJX3_ECTSI (Pathogenesis-related protein, class 1 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX3_ECTSI) HSP 1 Score: 111 bits (277), Expect = 1.820e-22 Identity = 59/118 (50.00%), Postives = 74/118 (62.71%), Query Frame = 3
Query: 6 YAQTLTNAQNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNPTGNYLGQYEEQI 359
+A+ LT AQ LFHS +E R G+GENL++C +D+ CYS AM+G Y EV V Y GHATQILWK T++VGC V C + Y+ LVC Y+P GNY GQYEEQ+
Sbjct: 374 HAERLT-AQCSSSLFHSTQEQRYGYGENLYMCWGSDS---CYSHEKAMEGLYYDEVQFDSVLQYGGHATQILWKATEQVGCVVARCT----NGGTPYTFLVCQYDPPGNYGGQYEEQV 483
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: D8LJW7_ECTSI (Pathogenesis-related protein, class 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW7_ECTSI) HSP 1 Score: 102 bits (253), Expect = 3.220e-20 Identity = 54/111 (48.65%), Postives = 65/111 (58.56%), Query Frame = 3
Query: 30 QNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNPTGNYLGQYEEQIE 362
Q LFHS RE R G+GENLF+C TDT CY+ YAM+ Y +EV VT Y GHATQILWK T+ VGC + C + Y+ LVC Y+P GN G E + E
Sbjct: 206 QCTSSLFHSTREQRYGYGENLFVCWGTDT---CYNHDYAMEHLYVEEVQFDDVTDYIGHATQILWKSTKNVGCVLAGCS----NGGTPYTFLVCQYDPAGNMGGDDEYRQE 309
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: D8LQY8_ECTSI (SCP-domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY8_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 3.910e-18 Identity = 53/138 (38.41%), Postives = 75/138 (54.35%), Query Frame = 3
Query: 6 YAQTLTNAQNCGELFHSEREDRNGWGENLFLCGSTDT-------TKDCYSAGYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNP-TGNYLGQYEEQIETSSKTKEFCGY 395
YA L + CG +E G GEN+F+C ++ + T C+S AM+ FYD +V GP +TY ATQ+LWK T ++GCA+ +CEK + Y +LVC Y+P G + E +E +SKT CGY
Sbjct: 133 YADLLASESMCGS---AETAHSTGLGENVFVCAASSSLSGDGAPTAACFSPESAMEAFYDSQVGGGPTSTYGPRATQVLWKSTTQIGCALRACEKDGLT----YDILVCRYSPPAGEDTTESEVALEANSKTT--CGY 261
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: A0A6H5KE93_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE93_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 5.170e-18 Identity = 52/138 (37.68%), Postives = 74/138 (53.62%), Query Frame = 3
Query: 6 YAQTLTNAQNCGELFHSEREDRNGWGENLFLCGSTDT-------TKDCYSAGYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNP-TGNYLGQYEEQIETSSKTKEFCGY 395
YA L + CG +E G GEN+F+C ++ + T C+S AM+ FYD +V G +TY +ATQ+LWK T ++GCA+ +CEK Y +LVC Y+P G + E +E +SKT CGY
Sbjct: 116 YADVLASESMCGS---AEAAHSTGLGENVFVCAASSSFSGNGAPTSACFSPEIAMEAFYDSQVGGGSTSTYGPYATQVLWKSTTQIGCALRACEK----EGLTYDILVCRYSPPAGEDATESEVALEANSKTT--CGY 244
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: A0A6H5JCL1_9PHAE (SCP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCL1_9PHAE) HSP 1 Score: 92.8 bits (229), Expect = 8.570e-17 Identity = 53/118 (44.92%), Postives = 68/118 (57.63%), Query Frame = 3
Query: 6 YAQTLTNAQNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNPTGNYLGQYEEQI 359
+A+ LT AQ LFHS +E R G+G NL++ +D+ CYS A G Y EV V Y GHATQILWK ++VGCA C + ++ LVC Y+P GN GQYEEQ+
Sbjct: 249 HAEGLT-AQCFSSLFHSTQEQRYGYGANLYIRWGSDS---CYSHKKATKGLYYDEVQSDSVLQYGGHATQILWKAAEQVGCAGARCT----NGGTPHAFLVCQYDPPGNSGGQYEEQV 358
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: A0A388JY83_CHABU (SCP domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JY83_CHABU) HSP 1 Score: 75.1 bits (183), Expect = 2.100e-11 Identity = 43/120 (35.83%), Postives = 65/120 (54.17%), Query Frame = 3
Query: 3 AYAQTLTNAQNCGELFHSEREDRNGWGENLFLCGS------TDTTKDCYSAGYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNPTGNYLGQ 344
++A+TL A+ C E++H+ G+GENL++ S T T G +D YD E GH TQ++W++T+EVGCA+ SC + T+ + VC YNP GNY+G+
Sbjct: 151 SWARTL--AETC-EMYHASDS---GYGENLYMAWSSGPIDITPTEVVQSWGGERVD--YDYETNTCRADRQCGHYTQMVWRNTKEVGCAITSCTLVRDGETYNAQIAVCRYNPPGNYVGE 262
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: A0A443SPC5_9ACAR (SCP domain-containing protein n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SPC5_9ACAR) HSP 1 Score: 68.9 bits (167), Expect = 4.930e-10 Identity = 42/114 (36.84%), Postives = 61/114 (53.51%), Query Frame = 3
Query: 42 ELFHSEREDRNG-----WGENLFLCGSTDTTKDCYSA---GYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNPTGNYLGQYEEQI 359
+L S + D NG +GENL+ GS C A Y +YDK + T GH TQ++WK T E+GCA + + R ++V+VC+YNP GNY+G+YE+ +
Sbjct: 60 QLVESCKFDHNGNSGSGFGENLYA-GSGSLGATCSRAVTNWYNEKQYYDKANPGFSMKT--GHYTQVVWKSTTELGCAKGTYPITKNCRMGGWTVVVCSYNPPGNYVGKYEQNV 170
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: H2AN42_KAZAF (SCP domain-containing protein n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AN42_KAZAF) HSP 1 Score: 70.5 bits (171), Expect = 6.070e-10 Identity = 40/123 (32.52%), Postives = 64/123 (52.03%), Query Frame = 3
Query: 3 AYAQTLTNAQNCGELFHSEREDRNGWGENLFLCGSTDTTKDCYSAGYAMDGFYDK----EVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNPTGNYLGQYEEQI 359
+YAQ+L +A +C ED + +GENL L Y A+D +YD+ + + ++ GH TQ++WK T VGC ++ C+ TW +VC+YNP GN +G++ E +
Sbjct: 140 SYAQSLADAYDCSGTL---TEDDSSYGENLALG---------YGITGAVDAWYDEISEYDFSSPGYSSSTGHFTQVVWKSTTSVGCGIKYCDT-----TWG-EYVVCSYNPAGNVIGEFSENV 244
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Match: A0A1W1CJ58_9ZZZZ (SCP-like family protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A1W1CJ58_9ZZZZ) HSP 1 Score: 68.6 bits (166), Expect = 8.260e-10 Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 3
Query: 78 WGENLFLCGSTDTTKDCYSAGYAMDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYSVLVCNYNPTGNYLGQ 344
+GENL+ G+ + D +A Y Y+ GH TQ++WKDT EVGCA S S +W+ +++VC YNP GNY+GQ
Sbjct: 96 YGENLYASGAEASFVDAVNAWYREKAEYNTNTKTCNTGKTCGHYTQLIWKDTLEVGCAKSS------SASWK-TIVVCQYNPPGNYIGQ 177 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17355.4088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17355.4088.1 >prot_H-paniculata_contig17355.4088.1 ID=prot_H-paniculata_contig17355.4088.1|Name=mRNA_H-paniculata_contig17355.4088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp MDGFYDKEVTDGPVTTYQGHATQILWKDTQEVGCAVESCEKIEQSRTWRYback to top mRNA from alignment at H-paniculata_contig17355:102..2388+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17355.4088.1 ID=mRNA_H-paniculata_contig17355.4088.1|Name=mRNA_H-paniculata_contig17355.4088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2287bp|location=Sequence derived from alignment at H-paniculata_contig17355:102..2388+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17355:102..2388+ >mRNA_H-paniculata_contig17355.4088.1 ID=mRNA_H-paniculata_contig17355.4088.1|Name=mRNA_H-paniculata_contig17355.4088.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig17355:102..2388+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |