mRNA_H-paniculata_contig1735.4086.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1735.4086.1
Unique NamemRNA_H-paniculata_contig1735.4086.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A6H5L2Q2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2Q2_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 3.610e-36
Identity = 65/77 (84.42%), Postives = 70/77 (90.91%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG DR+GSGGAANFARRSPFPMINILRT QVRL Q+SIPTGLVYKQNE+VLE++GAG LQKMLE RDW GLEG KV
Sbjct:  364 RDGRDRIGSGGAANFARRSPFPMINILRTNQVRLAQKSIPTGLVYKQNEEVLEEVGAGDLQKMLEVRDWTGLEGKKV 440          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: D7G7N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N7_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 5.820e-36
Identity = 64/76 (84.21%), Postives = 69/76 (90.79%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNK 264
            RDG DR+GSGGAANFARRSPFPMINILRT QVRL Q+SIPTGLVYKQNE+VLE++GAG LQKMLE RDW GLEG K
Sbjct:  302 RDGRDRIGSGGAANFARRSPFPMINILRTNQVRLAQKSIPTGLVYKQNEEVLEEVGAGDLQKMLEVRDWTGLEGKK 377          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A835ZCU6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU6_9STRA)

HSP 1 Score: 125 bits (313), Expect = 9.750e-32
Identity = 60/77 (77.92%), Postives = 65/77 (84.42%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG  RLG  GAANFARRSPFPMINILRT QVRL QRS+PTGLVYKQNE+VLE IGA  LQ+MLE RDW+GL G +V
Sbjct:  280 RDGQARLGDAGAANFARRSPFPMINILRTPQVRLAQRSVPTGLVYKQNEEVLEAIGAAPLQRMLEARDWSGLAGQRV 356          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S0Z2B5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z2B5_9CRYP)

HSP 1 Score: 112 bits (279), Expect = 1.580e-29
Identity = 53/77 (68.83%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG DR+G G AANFARRSPFPMINILRTKQVRL Q+SIPTGLVY QNE+ L ++G+  LQ+ML  RDW  L   +V
Sbjct:   65 RDGADRMGGGSAANFARRSPFPMINILRTKQVRLAQKSIPTGLVYTQNEETLNEVGSDNLQRMLVERDWEELAETRV 141          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S0NF62_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0NF62_9CRYP)

HSP 1 Score: 111 bits (277), Expect = 4.140e-27
Identity = 54/77 (70.13%), Postives = 60/77 (77.92%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG DR+G  GAANFARRS FPMINILRT QVRL Q+SIPTGLVY QNE+ L ++GA  LQKML  RDW+ L   KV
Sbjct:  333 RDGADRMGESGAANFARRSSFPMINILRTNQVRLAQKSIPTGLVYTQNEETLMEVGAENLQKMLVARDWSPLTNTKV 409          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S3XYD6_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XYD6_HETAK)

HSP 1 Score: 111 bits (277), Expect = 8.620e-27
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG DRLG  GAAN+ARRSP PMINILRT QVR GQ+ IPTGLVY QNE  L +IG   LQ ML++ DW+GLEG  V
Sbjct:  325 RDGQDRLGDAGAANYARRSPLPMINILRTDQVRTGQKGIPTGLVYTQNEKTLAEIGVSRLQTMLDSCDWSGLEGTAV 401          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S0TPK1_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0TPK1_HEMAN)

HSP 1 Score: 107 bits (267), Expect = 1.240e-26
Identity = 52/77 (67.53%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG DR+G   AANFARRSPFPMINILRTKQVRL Q+SIPTGLVY QNE+ L ++G   LQ+ML  RDW  L   +V
Sbjct:  184 RDGADRMGDQSAANFARRSPFPMINILRTKQVRLAQKSIPTGLVYTQNEETLSEVGVEDLQRMLIERDWKQLAETRV 260          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: L1JRB3_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JRB3_GUITC)

HSP 1 Score: 108 bits (270), Expect = 1.770e-26
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG DR+G  GAANFARRS FPMINILRT QVRL Q+SIPTGLVY QNE+ L ++GA  LQKML  RDW+ L   K 
Sbjct:  233 RDGADRMGESGAANFARRSSFPMINILRTNQVRLAQKSIPTGLVYTQNEETLMEVGAENLQKMLVERDWSSLMVRKA 309          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S4T8N8_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4T8N8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 2.380e-24
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG +R G G AAN+ARRSP+PMIN++RT QVR  Q+ IPTGLVY QNE  L  IG  TL+KML  RDW  ++  KV
Sbjct:    7 RDGGERSGMGSAANYARRSPWPMINLIRTNQVRAAQKGIPTGLVYTQNEKTLSGIGTKTLEKMLRLRDWEDIKDIKV 83          
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Match: A0A7S2WW48_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW48_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.800e-24
Identity = 51/77 (66.23%), Postives = 58/77 (75.32%), Query Frame = 1
Query:   37 RDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSIPTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKV 267
            RDG  RLG+ GA N+ARRSPFPMINILRT QVR+ Q++IPTGLVY+QNE VL  IG   LQ ML TRDW  L   +V
Sbjct:  329 RDGRQRLGNEGAGNYARRSPFPMINILRTPQVRIAQKAIPTGLVYEQNERVLAGIGGSKLQDMLVTRDWEELRQQRV 405          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1735.4086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2Q2_9PHAE3.610e-3684.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7N7_ECTSI5.820e-3684.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZCU6_9STRA9.750e-3277.92Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S0Z2B5_9CRYP1.580e-2968.83Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0NF62_9CRYP4.140e-2770.13Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
A0A7S3XYD6_HETAK8.620e-2768.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S0TPK1_HEMAN1.240e-2667.53Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
L1JRB3_GUITC1.770e-2668.83Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S4T8N8_9STRA2.380e-2461.04Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2WW48_9STRA2.800e-2466.23Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1735contigH-paniculata_contig1735:23638..24573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue5.2e-30
Seed eggNOG ortholog2880.D7G7N7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF1415)
EggNOG OGs2RXZW@2759,COG3310@1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size270
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1735.4086.1prot_H-paniculata_contig1735.4086.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1735 23638..24570 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929366.525079-CDS-H-paniculata_contig1735:23637..237781622929366.525079-CDS-H-paniculata_contig1735:23637..23778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1735 23638..23778 -
1691480832.2946777-CDS-H-paniculata_contig1735:23637..237781691480832.2946777-CDS-H-paniculata_contig1735:23637..23778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1735 23638..23778 -
1622929366.545415-CDS-H-paniculata_contig1735:24444..245701622929366.545415-CDS-H-paniculata_contig1735:24444..24570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1735 24445..24570 -
1691480832.306392-CDS-H-paniculata_contig1735:24444..245701691480832.306392-CDS-H-paniculata_contig1735:24444..24570Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1735 24445..24570 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929366.561224-UTR-H-paniculata_contig1735:24570..245731622929366.561224-UTR-H-paniculata_contig1735:24570..24573Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1735 24571..24573 -
1691480832.316659-UTR-H-paniculata_contig1735:24570..245731691480832.316659-UTR-H-paniculata_contig1735:24570..24573Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1735 24571..24573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1735.4086.1

>prot_H-paniculata_contig1735.4086.1 ID=prot_H-paniculata_contig1735.4086.1|Name=mRNA_H-paniculata_contig1735.4086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MRAFFFFFVFDRDGNDRLGSGGAANFARRSPFPMINILRTKQVRLGQRSI
PTGLVYKQNEDVLEQIGAGTLQKMLETRDWAGLEGNKVH
back to top

mRNA from alignment at H-paniculata_contig1735:23638..24573-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1735.4086.1 ID=mRNA_H-paniculata_contig1735.4086.1|Name=mRNA_H-paniculata_contig1735.4086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=936bp|location=Sequence derived from alignment at H-paniculata_contig1735:23638..24573- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTGATGAGAGCTTTTTTTTTTTTTTTTGTATTCGATAGGGACGGAAACGA TCGGCTTGGGAGCGGCGGCGCGGCTAACTTTGCCCGGCGATCTCCCTTCC CGATGATCAACATCCTTAGGACTAAGCAGGTGGGTGTGGAAACAAGAACG CGAGCTTTTACTTTGCGTACAACAAAGCAACTCTGGTGAGAGAGCGAGTG AAGTGTGAACAGATCGAGTAGCAAGGAGCGTTCATCTTGTTACTCATGTG TAGTATGATTGATTGATGGTTCATGCCCTTCTTCTTTTCATCTTGATGTT TTTGTACATCTTGGCCTTCTTGTTCATCTTGGCCATTTTTCAACAACTTT CCTTGATCTTGGTCTTGACCTTTGTCCTCTTCAACAACTCATCTGCCCCT TCGTCTTCATCTTCATCTTGGTCATTCTTTAACAACTCACTTTCATGTTC ATCTTGGTCTTGGTCATTCTTCAACAACTCACCTTCATGTTCATCTTGGT CATTCTTCAATAACTCACCTTCATGTTCATCTTGGTCTCGGTCATTCTTC AACAACTCACCTTCATGTTCATCTTGGTCATTCTTCAAAACTAACATGCA TCTTCATCTTGGTCTCGGTCATTCTTCAACAACTCACCTGCACCTTGGTA CTGATCTTGGTGTTCGTCTTGGTCCTCTTCAACAAACTCACCGGTACTCT TATGCATCTTCGTCTTGACCCTCTTCGTCTCCTCGTTGCCTTTGTAATTG TTAACGTTGGAACCGTTTGGTGACATCTCCCGTTAAAAACTACAGGTACG TCTTGGCCAACGGTCCATCCCGACCGGCCTTGTTTACAAGCAAAACGAAG ATGTCCTCGAGCAAATTGGAGCTGGTACTTTGCAGAAAATGCTCGAGACG AGAGACTGGGCAGGGCTAGAAGGCAACAAGGTGCAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig1735:23638..24573-

>mRNA_H-paniculata_contig1735.4086.1 ID=mRNA_H-paniculata_contig1735.4086.1|Name=mRNA_H-paniculata_contig1735.4086.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig1735:23638..24573- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGAGCTTTTTTTTTTTTTTTTGTATTCGATAGGGACGGAAACGATCG
GCTTGGGAGCGGCGGCGCGGCTAACTTTGCCCGGCGATCTCCCTTCCCGA
TGATCAACATCCTTAGGACTAAGCAGATGAGAGCTTTTTTTTTTTTTTTT
GTATTCGATAGGGACGGAAACGATCGGCTTGGGAGCGGCGGCGCGGCTAA
CTTTGCCCGGCGATCTCCCTTCCCGATGATCAACATCCTTAGGACTAAGC
AGGTACGTCTTGGCCAACGGTCCATCCCGACCGGCCTTGTTTACAAGCAA
AACGAAGATGTCCTCGAGCAAATTGGAGCTGGTACTTTGCAGAAAATGCT
CGAGACGAGAGACTGGGCAGGGCTAGAAGGCAACAAGGTGCACGTACGTC
TTGGCCAACGGTCCATCCCGACCGGCCTTGTTTACAAGCAAAACGAAGAT
GTCCTCGAGCAAATTGGAGCTGGTACTTTGCAGAAAATGCTCGAGACGAG
AGACTGGGCAGGGCTAGAAGGCAACAAGGTGCAC
back to top