mRNA_H-paniculata_contig17348.4085.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17348.4085.1
Unique NamemRNA_H-paniculata_contig17348.4085.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17348.4085.1 vs. uniprot
Match: A0A6H5L1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V4_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.060e-20
Identity = 51/68 (75.00%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:  439 LARAAAFNNRAVLLIAAGRGLEACGLLRACLLMLPGEPRPAFNLVLALWRLGRPRAACVQWMTFRGWV 642
            LARAAAFNNRAVLLIA GRG EAC LLRACLL+LP EPRP FN  LALWRLGR R AC  W+  R W+
Sbjct:  905 LARAAAFNNRAVLLIAFGRGEEACRLLRACLLLLPEEPRPTFNFSLALWRLGRRRDACAHWLEARRWL 972
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17348.4085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L1V4_9PHAE1.060e-2075.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17348contigH-paniculata_contig17348:2588..3235 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size648
Cds size648
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929366.4849389-CDS-H-paniculata_contig17348:2587..32351622929366.4849389-CDS-H-paniculata_contig17348:2587..3235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17348 2588..3235 +
1691480832.283934-CDS-H-paniculata_contig17348:2587..32351691480832.283934-CDS-H-paniculata_contig17348:2587..3235Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17348 2588..3235 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17348.4085.1prot_H-paniculata_contig17348.4085.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17348 2588..3235 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17348.4085.1

>prot_H-paniculata_contig17348.4085.1 ID=prot_H-paniculata_contig17348.4085.1|Name=mRNA_H-paniculata_contig17348.4085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=216bp
GVTTASTSFNDGPRCASSTAPAARGAPQQHGQKRSRERPMDSVGSAVRST
CPAGRSAGSVGSAARAAAEALQAAGAPAPATRSALAPPSRVRNESTIATA
RHSSTPATTTNNTNTSAVATDRKNSDQSSLLSTSPLSSSSIDRHRRLARA
AAFNNRAVLLIAAGRGLEACGLLRACLLMLPGEPRPAFNLVLALWRLGRP
RAACVQWMTFRGWVCD
back to top

mRNA from alignment at H-paniculata_contig17348:2588..3235+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17348.4085.1 ID=mRNA_H-paniculata_contig17348.4085.1|Name=mRNA_H-paniculata_contig17348.4085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=648bp|location=Sequence derived from alignment at H-paniculata_contig17348:2588..3235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTAACAACCGCAAGCACATCGTTCAACGACGGCCCCCGGTGTGCTAG
TAGTACTGCTCCCGCTGCGCGAGGAGCTCCGCAACAACACGGGCAAAAAC
GCTCCCGGGAACGTCCCATGGATTCCGTAGGTTCCGCAGTCCGTTCCACA
TGTCCCGCGGGTCGGTCCGCAGGTTCCGTAGGATCCGCGGCCCGAGCCGC
AGCCGAAGCACTACAAGCAGCAGGCGCACCAGCACCAGCTACAAGATCAG
CACTAGCACCACCTTCCAGGGTTCGTAACGAGAGTACCATTGCAACAGCA
CGCCACAGCAGTACACCCGCCACCACCACCAACAACACCAACACCTCCGC
CGTAGCGACCGACCGGAAAAACAGCGACCAGTCATCATTATTATCAACCT
CGCCGCTATCGTCATCATCCATCGATCGGCATCGCCGGCTCGCTCGGGCC
GCCGCCTTTAATAACCGGGCGGTTTTGCTCATCGCGGCGGGCCGCGGTCT
CGAAGCCTGCGGGCTGCTCCGCGCCTGCCTGCTGATGCTGCCCGGAGAAC
CTCGGCCGGCGTTCAACCTTGTCCTTGCCCTGTGGCGGCTGGGGCGCCCG
CGGGCGGCTTGTGTTCAATGGATGACGTTTAGAGGGTGGGTGTGTGAC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17348:2588..3235+

>mRNA_H-paniculata_contig17348.4085.1 ID=mRNA_H-paniculata_contig17348.4085.1|Name=mRNA_H-paniculata_contig17348.4085.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1296bp|location=Sequence derived from alignment at H-paniculata_contig17348:2588..3235+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGTAACAACCGCAAGCACATCGTTCAACGACGGCCCCCGGTGTGCTAG
TAGTACTGCTCCCGCTGCGCGAGGAGCTCCGCAACAACACGGGCAAAAAC
GCTCCCGGGAACGTCCCATGGATTCCGTAGGTTCCGCAGTCCGTTCCACA
TGTCCCGCGGGTCGGTCCGCAGGTTCCGTAGGATCCGCGGCCCGAGCCGC
AGCCGAAGCACTACAAGCAGCAGGCGCACCAGCACCAGCTACAAGATCAG
CACTAGCACCACCTTCCAGGGTTCGTAACGAGAGTACCATTGCAACAGCA
CGCCACAGCAGTACACCCGCCACCACCACCAACAACACCAACACCTCCGC
CGTAGCGACCGACCGGAAAAACAGCGACCAGTCATCATTATTATCAACCT
CGCCGCTATCGTCATCATCCATCGATCGGCATCGCCGGCTCGCTCGGGCC
GCCGCCTTTAATAACCGGGCGGTTTTGCTCATCGCGGCGGGCCGCGGTCT
CGAAGCCTGCGGGCTGCTCCGCGCCTGCCTGCTGATGCTGCCCGGAGAAC
CTCGGCCGGCGTTCAACCTTGTCCTTGCCCTGTGGCGGCTGGGGCGCCCG
CGGGCGGCTTGTGTTCAATGGATGACGTTTAGAGGGTGGGTGTGTGACGG
GGTAACAACCGCAAGCACATCGTTCAACGACGGCCCCCGGTGTGCTAGTA
GTACTGCTCCCGCTGCGCGAGGAGCTCCGCAACAACACGGGCAAAAACGC
TCCCGGGAACGTCCCATGGATTCCGTAGGTTCCGCAGTCCGTTCCACATG
TCCCGCGGGTCGGTCCGCAGGTTCCGTAGGATCCGCGGCCCGAGCCGCAG
CCGAAGCACTACAAGCAGCAGGCGCACCAGCACCAGCTACAAGATCAGCA
CTAGCACCACCTTCCAGGGTTCGTAACGAGAGTACCATTGCAACAGCACG
CCACAGCAGTACACCCGCCACCACCACCAACAACACCAACACCTCCGCCG
TAGCGACCGACCGGAAAAACAGCGACCAGTCATCATTATTATCAACCTCG
CCGCTATCGTCATCATCCATCGATCGGCATCGCCGGCTCGCTCGGGCCGC
CGCCTTTAATAACCGGGCGGTTTTGCTCATCGCGGCGGGCCGCGGTCTCG
AAGCCTGCGGGCTGCTCCGCGCCTGCCTGCTGATGCTGCCCGGAGAACCT
CGGCCGGCGTTCAACCTTGTCCTTGCCCTGTGGCGGCTGGGGCGCCCGCG
GGCGGCTTGTGTTCAATGGATGACGTTTAGAGGGTGGGTGTGTGAC
back to top