mRNA_H-paniculata_contig17343.4084.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17343.4084.1
Unique NamemRNA_H-paniculata_contig17343.4084.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17343.4084.1 vs. uniprot
Match: A0A6H5L609_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L609_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 2.450e-15
Identity = 36/42 (85.71%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    4 QEEVSSLSALMEFLRLLCENHYHEMQDYMRTQPDNLRSYNVV 129
            +EEV+SLSALMEFLRLLCENHY +MQDYMR QPDNLRSYN+V
Sbjct:  382 EEEVASLSALMEFLRLLCENHYLDMQDYMRRQPDNLRSYNMV 423
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BLAST of mRNA_H-paniculata_contig17343.4084.1 vs. uniprot
Match: D7FMW8_ECTSI (Inositol triphosphate receptor (IP3R)/ Ryanodine receptor like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMW8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.220e-15
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    4 QEEVSSLSALMEFLRLLCENHYHEMQDYMRTQPDNLRSYNVV 129
            +EEV+SLSALMEFLRLLCENHY +MQDYMR QPDNLR+YN+V
Sbjct: 3435 EEEVASLSALMEFLRLLCENHYLDMQDYMRRQPDNLRTYNMV 3476
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BLAST of mRNA_H-paniculata_contig17343.4084.1 vs. uniprot
Match: A0A7S2SK74_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SK74_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.790e-8
Identity = 24/38 (63.16%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   16 SSLSALMEFLRLLCENHYHEMQDYMRTQPDNLRSYNVV 129
            S +  L+E LRL+CE+HY ++QDY+R QPDNLRSYN+V
Sbjct:  378 SLILKLVEVLRLMCEDHYTQLQDYLRNQPDNLRSYNLV 415
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BLAST of mRNA_H-paniculata_contig17343.4084.1 vs. uniprot
Match: A0A7S1U756_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U756_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 3.800e-8
Identity = 21/33 (63.64%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:   31 LMEFLRLLCENHYHEMQDYMRTQPDNLRSYNVV 129
            ++EFLRL+CENHY  +Q+Y+R QPDN+RS+NV+
Sbjct:   35 VLEFLRLMCENHYRPLQNYLRVQPDNMRSFNVI 67
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BLAST of mRNA_H-paniculata_contig17343.4084.1 vs. uniprot
Match: A0A210Q2I6_MIZYE (Inositol 1,4,5-trisphosphate receptor n=1 Tax=Mizuhopecten yessoensis TaxID=6573 RepID=A0A210Q2I6_MIZYE)

HSP 1 Score: 47.8 bits (112), Expect = 5.140e-5
Identity = 18/36 (50.00%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   22 LSALMEFLRLLCENHYHEMQDYMRTQPDNLRSYNVV 129
            +  ++ FL+LLCENH H++Q+Y+R QP+N   YN+V
Sbjct: 1170 MKPILRFLQLLCENHNHDLQNYLRHQPNNKTPYNLV 1205
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BLAST of mRNA_H-paniculata_contig17343.4084.1 vs. uniprot
Match: UPI000B45F16C (LOW QUALITY PROTEIN: inositol 1,4,5-trisphosphate receptor type 1-like n=2 Tax=Pectinidae TaxID=6566 RepID=UPI000B45F16C)

HSP 1 Score: 47.8 bits (112), Expect = 5.140e-5
Identity = 18/36 (50.00%), Postives = 28/36 (77.78%), Query Frame = 1 
Query:   22 LSALMEFLRLLCENHYHEMQDYMRTQPDNLRSYNVV 129
            +  ++ FL+LLCENH H++Q+Y+R QP+N   YN+V
Sbjct: 1928 MKPILRFLQLLCENHNHDLQNYLRHQPNNKTPYNLV 1963
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17343.4084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L609_9PHAE2.450e-1585.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMW8_ECTSI6.220e-1583.33Inositol triphosphate receptor (IP3R)/ Ryanodine r... [more]
A0A7S2SK74_9STRA2.790e-863.16Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
A0A7S1U756_9STRA3.800e-863.64Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A210Q2I6_MIZYE5.140e-550.00Inositol 1,4,5-trisphosphate receptor n=1 Tax=Mizu... [more]
UPI000B45F16C5.140e-550.00LOW QUALITY PROTEIN: inositol 1,4,5-trisphosphate ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17343contigH-paniculata_contig17343:3313..3444 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score77.4
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog2880.D7FMW8
Preferred nameRYR1
KEGG koko:K04958,ko:K04960,ko:K04961,ko:K04962,ko:K04963
KEGG TC1.A.3.1,1.A.3.1.2,1.A.3.2
KEGG Pathwayko04020,ko04022,ko04024,ko04070,ko04114,ko04140,ko04210,ko04218,ko04260,ko04261,ko04270,ko04371,ko04540,ko04611,ko04621,ko04713,ko04720,ko04723,ko04724,ko04725,ko04726,ko04728,ko04730,ko04742,ko04745,ko04750,ko04911,ko04912,ko04915,ko04918,ko04921,ko04922,ko04924,ko04925,ko04927,ko04934,ko04970,ko04971,ko04972,ko05010,ko05016,ko05167,ko05205,ko05410,ko05412,ko05414,map04020,map04022,map04024,map04070,map04114,map04140,map04210,map04218,map04260,map04261,map04270,map04371,map04540,map04611,map04621,map04713,map04720,map04723,map04724,map04725,map04726,map04728,map04730,map04742,map04745,map04750,map04911,map04912,map04915,map04918,map04921,map04922,map04924,map04925,map04927,map04934,map04970,map04971,map04972,map05010,map05016,map05167,map05205,map05410,map05412,map05414
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity
EggNOG OGsKOG3533@1,KOG3533@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01009,ko04040,ko04147
Exons1
Model size132
Cds size132
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929366.4334085-CDS-H-paniculata_contig17343:3312..34441622929366.4334085-CDS-H-paniculata_contig17343:3312..3444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17343 3313..3444 -
1691480832.2724144-CDS-H-paniculata_contig17343:3312..34441691480832.2724144-CDS-H-paniculata_contig17343:3312..3444Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17343 3313..3444 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17343.4084.1prot_H-paniculata_contig17343.4084.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17343 3313..3444 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17343.4084.1

>prot_H-paniculata_contig17343.4084.1 ID=prot_H-paniculata_contig17343.4084.1|Name=mRNA_H-paniculata_contig17343.4084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=44bp
EQEEVSSLSALMEFLRLLCENHYHEMQDYMRTQPDNLRSYNVVR
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mRNA from alignment at H-paniculata_contig17343:3313..3444-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17343.4084.1 ID=mRNA_H-paniculata_contig17343.4084.1|Name=mRNA_H-paniculata_contig17343.4084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=132bp|location=Sequence derived from alignment at H-paniculata_contig17343:3313..3444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGGAAGAAGTGTCTAGCCTCTCTGCGCTGATGGAGTTTTTACGATT
GCTGTGCGAGAACCACTACCATGAGATGCAAGATTACATGCGCACGCAGC
CGGACAACCTCCGCAGCTACAACGTGGTAAGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17343:3313..3444-

>mRNA_H-paniculata_contig17343.4084.1 ID=mRNA_H-paniculata_contig17343.4084.1|Name=mRNA_H-paniculata_contig17343.4084.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=264bp|location=Sequence derived from alignment at H-paniculata_contig17343:3313..3444- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGCAGGAAGAAGTGTCTAGCCTCTCTGCGCTGATGGAGTTTTTACGATT
GCTGTGCGAGAACCACTACCATGAGATGCAAGATTACATGCGCACGCAGC
CGGACAACCTCCGCAGCTACAACGTGGTAAGAGAGCAGGAAGAAGTGTCT
AGCCTCTCTGCGCTGATGGAGTTTTTACGATTGCTGTGCGAGAACCACTA
CCATGAGATGCAAGATTACATGCGCACGCAGCCGGACAACCTCCGCAGCT
ACAACGTGGTAAGA
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