mRNA_H-paniculata_contig17340.4082.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17340.4082.1
Unique NamemRNA_H-paniculata_contig17340.4082.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Match: D7FLV3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV3_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 8.420e-8
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   16 RTALIDAQSVAALLMTAEAMVTDLPSDESVPPPMGGGG 129
            RTAL+DA+SVAAL +TAEAMV D P +E++ PPMGGGG
Sbjct:    2 RTALVDARSVAALQVTAEAMVRDFPEEEALEPPMGGGG 39
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BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Match: A0A6H5KRB3_9PHAE (HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB3_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 9.220e-8
Identity = 31/40 (77.50%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    7 QVVRTALIDAQSVAALLMTAEAMVTDLPSDESVPPPMGGG 126
            +VVRTAL+DAQSVAALLMTAEAMV DLP +E+   PMGGG
Sbjct:  523 KVVRTALVDAQSVAALLMTAEAMVADLPEEEAPASPMGGG 562
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BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Match: A0A3P3F368_9HYPH (Molecular chaperone GroEL (Fragment) n=1 Tax=Mesorhizobium tamadayense TaxID=425306 RepID=A0A3P3F368_9HYPH)

HSP 1 Score: 48.9 bits (115), Expect = 6.230e-6
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    7 QVVRTALIDAQSVAALLMTAEAMVTDLPSDESVPPPMGGGGXM 135
            +VVRTAL DA S+AALL+TAEAM+TD+P+ ++ P P GG G M
Sbjct:   62 KVVRTALQDAGSIAALLITAEAMITDIPAKDTAPSPGGGMGGM 104
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BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Match: F0WHV2_9STRA (Mitochondriatargeted chaperonin putative n=2 Tax=Albugo TaxID=65356 RepID=F0WHV2_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 7.400e-6
Identity = 26/40 (65.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    7 QVVRTALIDAQSVAALLMTAEAMVTDLPSDESVPPPMGGG 126
            +VVRT L+DA SVA+L+MTAEA++ DLP+D +  PPMGGG
Sbjct:  527 KVVRTGLLDASSVASLMMTAEALIADLPADGNDAPPMGGG 566
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BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Match: M4BZA5_HYAAE (Uncharacterized protein n=29 Tax=Peronosporaceae TaxID=4777 RepID=M4BZA5_HYAAE)

HSP 1 Score: 49.3 bits (116), Expect = 2.590e-5
Identity = 24/39 (61.54%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:    7 QVVRTALIDAQSVAALLMTAEAMVTDLPSDESVPPPMGG 123
            +VVRT L+DA SVA+L+MTAEA++ DLP++    PPMGG
Sbjct:  528 KVVRTGLVDASSVASLMMTAEALIADLPAENGAAPPMGG 566
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BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Match: A0A1F8ETN5_9BACT (Chaperonin GroEL n=1 Tax=Candidatus Yanofskybacteria bacterium RIFCSPHIGHO2_01_FULL_44_22 TaxID=1802669 RepID=A0A1F8ETN5_9BACT)

HSP 1 Score: 48.1 bits (113), Expect = 6.640e-5
Identity = 26/44 (59.09%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    4 IQVVRTALIDAQSVAALLMTAEAMVTDLPSDESVPPPMGGGGXM 135
            ++VV+TALI+A SVA+L++T EA+VTDLP ++    PMGGGG M
Sbjct:  518 LKVVKTALINAVSVASLILTTEAVVTDLPEEKESKMPMGGGGGM 561
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BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Match: A0A448XJK0_9PLAT (Hypothetical protein n=1 Tax=Protopolystoma xenopodis TaxID=117903 RepID=A0A448XJK0_9PLAT)

HSP 1 Score: 48.1 bits (113), Expect = 6.650e-5
Identity = 27/41 (65.85%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    7 QVVRTALIDAQSVAALLMTAEAMVTDLPSDESVPPPMGGGG 129
            +VVRTAL+DA  VA+LL TAEA+VTDLP +ES  P M G G
Sbjct:  536 KVVRTALVDAAGVASLLTTAEAVVTDLPKEESTAPGMAGAG 576
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BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Match: A0A7S0D0S5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0D0S5_9EUKA)

HSP 1 Score: 47.8 bits (112), Expect = 9.100e-5
Identity = 26/42 (61.90%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:    7 QVVRTALIDAQSVAALLMTAEAMVTDLPSD-ESVPPPMGGGG 129
            +VVRTAL+DA SVA+L+MTAE +V ++P + E+  PPMGGGG
Sbjct:  548 KVVRTALLDASSVASLMMTAETVVVEIPDEKEAAAPPMGGGG 589
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17340.4082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FLV3_ECTSI8.420e-871.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KRB3_9PHAE9.220e-877.50HSP60 protein n=2 Tax=Ectocarpus TaxID=2879 RepID=... [more]
A0A3P3F368_9HYPH6.230e-662.79Molecular chaperone GroEL (Fragment) n=1 Tax=Mesor... [more]
F0WHV2_9STRA7.400e-665.00Mitochondriatargeted chaperonin putative n=2 Tax=A... [more]
M4BZA5_HYAAE2.590e-561.54Uncharacterized protein n=29 Tax=Peronosporaceae T... [more]
A0A1F8ETN5_9BACT6.640e-559.09Chaperonin GroEL n=1 Tax=Candidatus Yanofskybacter... [more]
A0A448XJK0_9PLAT6.650e-565.85Hypothetical protein n=1 Tax=Protopolystoma xenopo... [more]
A0A7S0D0S5_9EUKA9.100e-561.90Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17340contigH-paniculata_contig17340:1924..2094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue9.4e-09
Seed eggNOG ortholog2880.D7FLV5
Preferred nameHSP60
KEGG koko:K02940,ko:K04077
KEGG Pathwayko03010,ko03018,ko04212,ko04940,ko05134,ko05152,map03010,map03018,map04212,map04940,map05134,map05152
KEGG ModuleM00177
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000166,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005507,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005759,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006457,GO:0006458,GO:0006605,GO:0006626,GO:0006810,GO:0006839,GO:0006886,GO:0006950,GO:0006996,GO:0007005,GO:0008104,GO:0008144,GO:0008150,GO:0009266,GO:0009314,GO:0009408,GO:0009416,GO:0009453,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009605,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009941,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0017038,GO:0017076,GO:0019899,GO:0019954,GO:0022626,GO:0030554,GO:0030587,GO:0031090,GO:0031288,GO:0031967,GO:0031974,GO:0031975,GO:0032502,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035639,GO:0036094,GO:0040011,GO:0042221,GO:0042330,GO:0042331,GO:0042788,GO:0042886,GO:0043167,GO:0043168,GO:0043169,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044183,GO:0044422,GO:0044424,GO:0044429,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044743,GO:0045041,GO:0045184,GO:0046686,GO:0046872,GO:0046907,GO:0046914,GO:0046956,GO:0048856,GO:0050896,GO:0051082,GO:0051117,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0052128,GO:0055085,GO:0061077,GO:0065002,GO:0070013,GO:0070585,GO:0070727,GO:0071702,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072594,GO:0072655,GO:0090702,GO:0097159,GO:0097367,GO:0098588,GO:0098805,GO:0099120,GO:1901265,GO:1901363,GO:1990542,GO:1990904
EggNOG free text desc.protein refolding
EggNOG OGsCOG0459@1,KOG0356@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_001120.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03019,ko03029,ko03110,ko04147
Exons1
Model size171
Cds size171
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929366.334197-CDS-H-paniculata_contig17340:1923..20941622929366.334197-CDS-H-paniculata_contig17340:1923..2094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17340 1924..2094 -
1691480832.2048297-CDS-H-paniculata_contig17340:1923..20941691480832.2048297-CDS-H-paniculata_contig17340:1923..2094Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17340 1924..2094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17340.4082.1prot_H-paniculata_contig17340.4082.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17340 1924..2094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17340.4082.1

>prot_H-paniculata_contig17340.4082.1 ID=prot_H-paniculata_contig17340.4082.1|Name=mRNA_H-paniculata_contig17340.4082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
MIQVVRTALIDAQSVAALLMTAEAMVTDLPSDESVPPPMGGGGGMGGMGG
MGGMGM*
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mRNA from alignment at H-paniculata_contig17340:1924..2094-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17340.4082.1 ID=mRNA_H-paniculata_contig17340.4082.1|Name=mRNA_H-paniculata_contig17340.4082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig17340:1924..2094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATACAGGTGGTGCGCACAGCTTTGATAGACGCGCAGAGCGTGGCGGC
GCTCCTTATGACCGCGGAGGCCATGGTGACAGACCTGCCTTCTGATGAGT
CTGTCCCACCACCAATGGGCGGTGGTGGTGGTATGGGCGGTATGGGAGGC
ATGGGTGGCATGGGCATGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17340:1924..2094-

>mRNA_H-paniculata_contig17340.4082.1 ID=mRNA_H-paniculata_contig17340.4082.1|Name=mRNA_H-paniculata_contig17340.4082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig17340:1924..2094- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATACAGGTGGTGCGCACAGCTTTGATAGACGCGCAGAGCGTGGCGGC
GCTCCTTATGACCGCGGAGGCCATGGTGACAGACCTGCCTTCTGATGAGT
CTGTCCCACCACCAATGGGCGGTGGTGGTGGTATGGGCGGTATGGGAGGC
ATGGGTGGCATGGGCATGTAGATGATACAGGTGGTGCGCACAGCTTTGAT
AGACGCGCAGAGCGTGGCGGCGCTCCTTATGACCGCGGAGGCCATGGTGA
CAGACCTGCCTTCTGATGAGTCTGTCCCACCACCAATGGGCGGTGGTGGT
GGTATGGGCGGTATGGGAGGCATGGGTGGCATGGGCATGTAG
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