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Homology
BLAST of mRNA_H-paniculata_contig17337.4080.1 vs. uniprot
Match: D7FYP5_ECTSI (ADF-H domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYP5_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 1.140e-8 Identity = 37/80 (46.25%), Postives = 53/80 (66.25%), Query Frame = 3
Query: 1113 NDSRVKYFARPLTGKS--DANGFVPLVRPSSNSSALMSCLPIKCLQEAIKSALMGVGIHLQATDQGELELDHIKAQVQKI 1346
N+ R F T + +AN + + S +++ + + + +EAIKSALMG+GIHLQATDQGELELD+IK+QVQK+
Sbjct: 62 NECRYGVFDLDFTTRDGREANKLI-FISWSPDTAKIKNKMVYAASKEAIKSALMGIGIHLQATDQGELELDYIKSQVQKV 140
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 65.1 |
| Seed ortholog evalue | 9.7e-09 |
| Seed eggNOG ortholog | 2880.D7FYP5 |
| KEGG ko | ko:K05765 |
| KEGG Pathway | ko04360,ko04666,ko04810,ko05133,map04360,map04666,map04810,map05133 |
| Hectar predicted targeting category | no signal peptide or anchor |
| EggNOG free text desc. | actin filament depolymerization |
| EggNOG OGs | KOG1735@1,KOG1735@2759 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04131,ko04147,ko04812 |
| Exons | 2 |
| Model size | 3081 |
| Cds size | 135 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17337.4080.1 >prot_H-paniculata_contig17337.4080.1 ID=prot_H-paniculata_contig17337.4080.1|Name=mRNA_H-paniculata_contig17337.4080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MSCLPIKCLQEAIKSALMGVGIHLQATDQGELELDHIKAQVQKI* back to topmRNA from alignment at H-paniculata_contig17337:2030..5544+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig17337.4080.1 ID=mRNA_H-paniculata_contig17337.4080.1|Name=mRNA_H-paniculata_contig17337.4080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3515bp|location=Sequence derived from alignment at H-paniculata_contig17337:2030..5544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTATCTCGTGGTCTCCGGACACGGCTAAAATCAAAAATAAGATGGTTTA
CGCCGCGTCGAAGGTATTCTACTTTCGTGTAGTCTTGGTTTACTAACTGA
GCCAGCCGAAAAGCTCTCACTTGTATTCAAACTGTTTTCCTGGGACGTTC
TTTGAGTTACAGTAATAGATTTTGACACCAAGTGTCATGTACAAAATAAA
TATATGACCCTGTTCACTCAACACGTTTTTGTTTCTGCCCTACGGATGGC
GCATATTCCTTGAGCGTTCAAACTGTGTTGGCCTAATGTGTAACGATAAA
TAAATATAGGTGAACTGGTACGGAAGAAGTTTAGAAAAAAAATGGGAAGG
AAATAGCTGCCATCGCTTCCGTCGTAGGATCTGTCGCCGTGATCTGATCA
TGTCGGCTGTTTGTAAAACACTCGGTGCGAGCTTGCAGATGTTGCAAGGT
GGAGACAGATCCATGAAAACATTATACAACTATGGGATGCCGTTGGGTTA
CGTGGCTAGGGCATACTTCCATCCGGTTTTTTCGCACAAACGTGATTTTC
AAGACAGCTTACCGCGCTACTAAATACTACCAACGTTAGGTGTGTCGTCG
GAATATGATCCCACGAAAATTTTCGATTGAAAATATTTTCTCACAGACTC
AATAACAACAATGTTGGCACCCCAGTGCGATAGCGAAGGGTGGTTTCTGT
ATCAATAAATCACCACTCGTGCTGGGTAACGAAGGTAGTGTCAGCACTCT
ATATATACTCCTCGAGGACTGAGGCCTTGATTTGGGCTGGACGATACGGT
TACTTGAACCACTCACAGCCGCTCGTGTCACAAGATGGGTTCTTATGTAG
TTGTCCTGGTGAGGGTAATTTATTGGTGGCACCTGCGCTGTGATATAAAA
TTTGATCCGTTGAATCAGTGTGAAAACCTTTTGTCTTTTTCTTGACCTGG
AATTTTTTCAAGGGAGCGAAAGAGACGGGACACCAAGCATAACACGTTAA
ATTTTCATTGTGTGAGGACAGCTGTCTGTTTGTAGTCACCAGCAAAGGTC
GCAAAATCCAGGTAGTACGATGGCCAGCATGGTTGCGGGGACGGGGAGCT
GAGGTACATGAAAATGACAGTCGTGTCAAGTACTTCGCCCGGCCATTAAC
TGGAAAATCTGACGCTAACGGTTTTGTGCCGCTTGTGAGACCTTCTTCCA
ACTCCAGCGCGTTGATGTCATGTTTGCCCATAAAATGCCTTCAGGAGGCA
ATCAAGTCGGCACTCATGGGCGTGGGGATACACCTCCAGGCGACCGACCA
GGGAGAACTGGAGCTTGACCACATAAAGGCCCAAGTGCAGAAGATCTAAC
GTGGTGAACATGCCCGGAAAACCTGCCCTTTACAAAATGGTAGTTACTCT
TGTGATGACTCCAGAAAAATCCAGTGATGGTGCGAGTGAAAGAGGCCATA
TGAAGTTAGGGTTGGGGCCAGTGGGGTAAGGGACAGCTGGGAGGAAAGTC
CGGCGGGGGGGGAATTGAAAGGGTGGAATTAGAACTGCGTGTAGAAGGCA
AACATGTAGTAGCCTCCCCATCCTGTCAATTATTTGTGTGAGGTTACCTT
CAAAATAACCCTAGCTTCGTCCACTCTCCACCCGAATTGGAAGGTGGAGT
GAGGAAAACCTTCCTTTTGTCTCTAGCGGAAGAAACGAAACAAAACATCG
TTGTCTTCATTTTTTCTTTCAAGCCTCCCTCCTTTTTTCTCGCCTTTTTT
TTTTCATGTATACCACACTCTTCCTCGTCGTGTACAGGTGTTCCGATAAA
GAAGTTACGAAACGGCACCAAGAGGCTTTGAACGATACGTGTTGCAAAAA
GAAAAAATTATGTTTTCGGGGGCAAAATTTTGGACAGCCTCCCCTTTTCC
CGTTGTCTGGTATATTGGGGGGTTTGGCTTTGTGTTGGAGGGAGGGAGGC
TGGTGCTTGTTAGCGGGCGGGTTCTTTGGTAAGCGGTGGTTTCTGTCGTT
GAGGTTGAAACACAACCGACAAGCCGATTTATTGCTTCGCTGGGCGCCGA
AACCTTTAGCGCCCGACACGGTCGACGTTGGTGGATCGGGACGGTAGTTG
TGCCATATTCGGATGTTTGGTCTGAAGCGGGTGGATGTGGTCGTTGATGT
GTGCGTTGATTCTTTTCGTTGGGAGGGGCAAGTAGTTCCAAGAAAAGGGT
TGAGTGGTAGTTCTGTGGTTGACAGTGCCGTAGTTCAAGTTTGCGGTCTC
CTGGAATAGGTCCGTCGTCGCTAATGGTTTCGCTGCACGGTATTGTTCAG
AATAGTGGGCCAGGAGGGATCGAGAAAGTTTATCAGGGGTGAAGATGCTA
CTTCGCTGCTGTTGTGGCGCACTCTCTTGTCCGTAATTGCCGTTGAAGGA
CGAAAGAAACCGAGAAGTGGGAGATGTTGACCTTTTTTAGCTGCCGCTGC
TGCTTGACTCATGGGTCTCAATTTTATGTTGTTTTGCTAGAGGTGGTGCA
AATGAAGGAGCTGGTGGTCTTGTCCTGGAAATAACAGCGCATCGGTCCCA
TTGAAATGTATTTGTACACGCTCACACAAAACACAGGCTTGTACGTCGTT
TTTCGCCAAGAACTGGGCGTTGAGGTTGTTCCTCGAATCGTGGACCCTCC
AGCCCATTCCCACCTTACATTTACCCCCTACCCGCATCCCACTTCTACGC
CATTATATATACGCTTGGATGACGACGGTGCGTGATACTTTCGGCTTGAA
GCGGAGGTATTCAAGATAACACTGTGTTCACAAAAGTAAACGTTCTTCGT
TACGTGGCATGTGGGAGGGAGGAGAGAACATGAAGGAATTGGTGGTATCG
GGGTAAGAAAGTGTGTAGCTGTGAACTGTGTTGAAATTTGTGTCTTAGGG
GGTGTGTTATATAAGGAAGTAGTGTAACAGCAACAACCAAAGGCGTGGGA
TATAGATAATGCTCAATAACTGACAGTTATTGGGTGCAAATCTAATTGTT
AGGAGAGAGGAAGCGTCTGCGAGTGAAGTTCAAAAGTTGGTGTACGCAAA
TAAATTCGTGGGCCGAAATGAGTACGGCGAAACTATGAAGGGTGCAGCCA
CGGGCTATTCTTTCCCGTGGTGTACGCACGGTGTTGAGAAGGGCTTTTAT
CATGACATTCACGTATGGTGAACCCGGCCCCCTTGTTTATTGGGCTTCAT
TGAAGAAATGTTGATTTTCATATGTCGAGAAGCGAATACTTGATACGAAC
GGCAAATGCGCAAACACCGATTTTAATGTGCACTCCAAACTTTGCCTCTT
CTCTGAAAACAGGAGTATATGTACTAGATACAAGCTGGGTCGGGCAAGAC
AACCTGAAATCGGCAATATCGCCGCGCGCGGAGTAATACTTGGAGTTGGA
ACCTGAAATTTTGAGGCGTGATTTGAAACGCACTCGCCAAGACAACTATT
GGTTGGCTTTTTTTTTTTTTTTTCACGAGTTACGACCAAATTTATGTTTC
GCGAATACAGAAAAA back to topCoding sequence (CDS) from alignment at H-paniculata_contig17337:2030..5544+ >mRNA_H-paniculata_contig17337.4080.1 ID=mRNA_H-paniculata_contig17337.4080.1|Name=mRNA_H-paniculata_contig17337.4080.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig17337:2030..5544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCATGTTTGCCCATAAAATGCCTTCAGGAGGCAATCAAGTCGGCACT
CATGGGCGTGGGGATACACCTCCAGGCGACCGACCAGGGAGAACTGGAGC
TTGACCACATAAAGGCCCAAGTGCAGAAGATCTAAATGTCATGTTTGCCC
ATAAAATGCCTTCAGGAGGCAATCAAGTCGGCACTCATGGGCGTGGGGAT
ACACCTCCAGGCGACCGACCAGGGAGAACTGGAGCTTGACCACATAAAGG
CCCAAGTGCAGAAGATCTAA back to top
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