mRNA_H-paniculata_contig17333.4079.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17333.4079.1
Unique NamemRNA_H-paniculata_contig17333.4079.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17333.4079.1 vs. uniprot
Match: D8LQI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQI5_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 2.660e-25
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:   10 VVQYPGKFELKIIGTNEDGFVTDIRRAVAACLTKGDDNVVSCTTREKGRYTSISLKVFVDNSAQL 204
            +V+YPG F+LKIIG ++D FV+DIR+AVA CLT G+DNV+ C+TREKG+YTSI+LKV V+NS QL
Sbjct:   37 LVEYPGSFDLKIIGVDDDTFVSDIRKAVAGCLTNGEDNVIKCSTREKGKYTSITLKVRVENSTQL 101
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17333.4079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQI5_ECTSI2.660e-2567.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17333contigH-paniculata_contig17333:3545..3748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionConserved protein of Unknown function, DUF493 family
Ec32 orthologEc-10_005780.1
Exons1
Model size204
Cds size204
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.7768-CDS-H-paniculata_contig17333:3544..37481622929365.7768-CDS-H-paniculata_contig17333:3544..3748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17333 3545..3748 -
1691480832.1035998-CDS-H-paniculata_contig17333:3544..37481691480832.1035998-CDS-H-paniculata_contig17333:3544..3748Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17333 3545..3748 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17333.4079.1prot_H-paniculata_contig17333.4079.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17333 3545..3748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17333.4079.1

>prot_H-paniculata_contig17333.4079.1 ID=prot_H-paniculata_contig17333.4079.1|Name=mRNA_H-paniculata_contig17333.4079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MPIVVQYPGKFELKIIGTNEDGFVTDIRRAVAACLTKGDDNVVSCTTREK
GRYTSISLKVFVDNSAQL
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mRNA from alignment at H-paniculata_contig17333:3545..3748-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17333.4079.1 ID=mRNA_H-paniculata_contig17333.4079.1|Name=mRNA_H-paniculata_contig17333.4079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at H-paniculata_contig17333:3545..3748- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTATCGTGGTGCAGTACCCCGGGAAGTTTGAGCTGAAAATAATTGG
TACGAATGAAGATGGTTTCGTGACTGACATCCGAAGAGCCGTGGCGGCTT
GCTTGACCAAGGGGGACGATAACGTGGTGTCGTGTACGACACGAGAAAAG
GGTCGTTACACCAGCATCTCGCTTAAGGTTTTCGTCGATAATTCCGCTCA
GCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig17333:3545..3748-

>mRNA_H-paniculata_contig17333.4079.1 ID=mRNA_H-paniculata_contig17333.4079.1|Name=mRNA_H-paniculata_contig17333.4079.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig17333:3545..3748- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTATCGTGGTGCAGTACCCCGGGAAGTTTGAGCTGAAAATAATTGG
TACGAATGAAGATGGTTTCGTGACTGACATCCGAAGAGCCGTGGCGGCTT
GCTTGACCAAGGGGGACGATAACGTGGTGTCGTGTACGACACGAGAAAAG
GGTCGTTACACCAGCATCTCGCTTAAGGTTTTCGTCGATAATTCCGCTCA
GCTTATGCCTATCGTGGTGCAGTACCCCGGGAAGTTTGAGCTGAAAATAA
TTGGTACGAATGAAGATGGTTTCGTGACTGACATCCGAAGAGCCGTGGCG
GCTTGCTTGACCAAGGGGGACGATAACGTGGTGTCGTGTACGACACGAGA
AAAGGGTCGTTACACCAGCATCTCGCTTAAGGTTTTCGTCGATAATTCCG
CTCAGCTT
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