prot_H-paniculata_contig17332.4078.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17332.4078.1
Unique Name	prot_H-paniculata_contig17332.4078.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	108

Homology

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.030e-27
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 108
            V  A LWHRR+G +  +SLD+L+K   NG+  +G +S CDVCAVG S Q  HPK A +    PFQL+ TDLMGP +P ALGGF Y+    D+H K  + +L+K K
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEK 367

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.790e-26
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 108
            V  A LWHRR+G +  KSLD+L+K  +NG+     V DC  CA+GKS Q  HPK A + VK PFQL+F D +GP TP ALGGF+Y +   D+ TK  +  L+K K
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDK 627

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.150e-25
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 108
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D +GP TP ALGGF+Y +   D+HTK  +  L+K K
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.170e-25
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 108
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D +GP TP ALGGF+Y +   D+HTK  +  L+K K
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 796

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.170e-25
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 108
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D +GP TP ALGGF+Y +   D+HTK  +  L+K K
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.560e-24
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTK 98
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D +GP TP ALGGF+Y +   D+HTK
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTK 135

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.930e-24
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 108
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D  GP T   LGGF+Y +   D+HTK  +  L+K K
Sbjct:  475 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDK 579

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.250e-23
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 0

Query:    6 DATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 108
             A LWHRRLG +  +SLD+L+K D NG+   G +  CDVCA+GKS Q  HPK A + V   FQ + TDLMGPI+P A  GF+YVS     +TK  + +L+K+K
Sbjct:   36 SADLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATYDVSRHFQ-VSTDLMGPISPPARRGFRYVSKFVHGNTKWKEIFLIKTK 137

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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.040e-23
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLK 106
            V  A LWHRR+G +  KSLD+L+K   NG+   G V+DC VC +GKS Q  HPK   + V  PFQ +  D +GP TP ALGGF+Y +   D+ TK  +  L+K
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMK 385

[Close]

BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KDX9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.580e-23
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 0

Query:    4 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 108
            V  A LWHR +G +  KSLD+L+K   +G+   G V DC VC +GKS Q  HPK A + V  PFQ +  D +GP TP ALGGF+Y +   D+ TK  +  L+K K
Sbjct:  440 VESADLWHRHMGHINGKSLDVLRKEPVHGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVDTLGPSTPTALGGFKYATNFVDQQTKWAEIVLMKDK 544

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5K1J1_9PHAE	1.030e-27	50.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JBV6_9PHAE	1.790e-26	50.48	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJN3_9PHAE	1.150e-25	48.57	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KJH6_9PHAE	1.170e-25	48.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5J842_9PHAE	1.170e-25	48.57	Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KNH5_9PHAE	2.560e-24	50.53	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5JYB5_9PHAE	8.930e-24	46.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KBU1_9PHAE	2.250e-23	50.49	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5KXM1_9PHAE	3.040e-23	47.57	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDX9_9PHAE	5.580e-23	46.67	CCHC-type domain-containing protein n=1 Tax=Ectoca...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025724	GAG-pre-integrase domain	PFAM	PF13976	gag_pre-integrs	coord: 5..50 e-value: 2.7E-6 score: 27.2
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 56..108 e-value: 2.3E-5 score: 25.7
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 6..108
None	No IPR available	PANTHER	PTHR11439:SF250		coord: 6..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17332	contig	H-paniculata_contig17332:1256..1579 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17332.4078.1	mRNA_H-paniculata_contig17332.4078.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17332 1256..1579 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17332.4078.1 ID=prot_H-paniculata_contig17332.4078.1|Name=mRNA_H-paniculata_contig17332.4078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MQAVADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKS
HQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLT
KPYLLKSK

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR025724	GAG-pre-integrase_dom
IPR036397	RNaseH_sf
IPR039537	Retrotran_Ty1/copia-like