mRNA_H-paniculata_contig17332.4078.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17332.4078.1
Unique NamemRNA_H-paniculata_contig17332.4078.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 1.030e-27
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 324
            V  A LWHRR+G +  +SLD+L+K   NG+  +G +S CDVCAVG S Q  HPK A +    PFQL+ TDLMGP +P ALGGF Y+    D+H K  + +L+K K
Sbjct:  263 VKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEK 367
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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.790e-26
Identity = 53/105 (50.48%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 324
            V  A LWHRR+G +  KSLD+L+K  +NG+     V DC  CA+GKS Q  HPK A + VK PFQL+F D +GP TP ALGGF+Y +   D+ TK  +  L+K K
Sbjct:  523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDK 627
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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.150e-25
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 324
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D +GP TP ALGGF+Y +   D+HTK  +  L+K K
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674
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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.170e-25
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 324
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D +GP TP ALGGF+Y +   D+HTK  +  L+K K
Sbjct:  692 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 796
[Close]
BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.170e-25
Identity = 51/105 (48.57%), Postives = 68/105 (64.76%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 324
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D +GP TP ALGGF+Y +   D+HTK  +  L+K K
Sbjct:  570 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674
[Close]
BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.560e-24
Identity = 48/95 (50.53%), Postives = 63/95 (66.32%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTK 294
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D +GP TP ALGGF+Y +   D+HTK
Sbjct:   41 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTK 135
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BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.930e-24
Identity = 49/105 (46.67%), Postives = 65/105 (61.90%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 324
            V  A LWHRR+G +  KSLD+L+++  +G+   G V DC  C +GKS Q  HPK A + V  PFQL+F D  GP T   LGGF+Y +   D+HTK  +  L+K K
Sbjct:  475 VETADLWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDK 579
[Close]
BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 103 bits (256), Expect = 2.250e-23
Identity = 52/103 (50.49%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:   16 DATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 324
             A LWHRRLG +  +SLD+L+K D NG+   G +  CDVCA+GKS Q  HPK A + V   FQ + TDLMGPI+P A  GF+YVS     +TK  + +L+K+K
Sbjct:   36 SADLWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATYDVSRHFQ-VSTDLMGPISPPARRGFRYVSKFVHGNTKWKEIFLIKTK 137
[Close]
BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 3.040e-23
Identity = 49/103 (47.57%), Postives = 64/103 (62.14%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLK 318
            V  A LWHRR+G +  KSLD+L+K   NG+   G V+DC VC +GKS Q  HPK   + V  PFQ +  D +GP TP ALGGF+Y +   D+ TK  +  L+K
Sbjct:  283 VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMK 385
[Close]
BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Match: A0A6H5KDX9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX9_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 5.580e-23
Identity = 49/105 (46.67%), Postives = 64/105 (60.95%), Query Frame = 1 
Query:   10 VADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKSHQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLTKPYLLKSK 324
            V  A LWHR +G +  KSLD+L+K   +G+   G V DC VC +GKS Q  HPK A + V  PFQ +  D +GP TP ALGGF+Y +   D+ TK  +  L+K K
Sbjct:  440 VESADLWHRHMGHINGKSLDVLRKEPVHGVDYTGDVKDCSVCPLGKSAQQPHPKQATYGVLRPFQHVSVDTLGPSTPTALGGFKYATNFVDQQTKWAEIVLMKDK 544
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17332.4078.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1J1_9PHAE1.030e-2750.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBV6_9PHAE1.790e-2650.48Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJN3_9PHAE1.150e-2548.57Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE1.170e-2548.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE1.170e-2548.57Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KNH5_9PHAE2.560e-2450.53Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JYB5_9PHAE8.930e-2446.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KBU1_9PHAE2.250e-2350.49CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KXM1_9PHAE3.040e-2347.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDX9_9PHAE5.580e-2346.67CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17332contigH-paniculata_contig17332:1256..1579 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.4
Seed ortholog evalue4.5e-12
Seed eggNOG ortholog4081.Solyc11g062200.1.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,44UC5@71274,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelasterids
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.7331345-CDS-H-paniculata_contig17332:1255..15791622929365.7331345-CDS-H-paniculata_contig17332:1255..1579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17332 1256..1579 -
1691480832.0943844-CDS-H-paniculata_contig17332:1255..15791691480832.0943844-CDS-H-paniculata_contig17332:1255..1579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17332 1256..1579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17332.4078.1prot_H-paniculata_contig17332.4078.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17332 1256..1579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17332.4078.1

>prot_H-paniculata_contig17332.4078.1 ID=prot_H-paniculata_contig17332.4078.1|Name=mRNA_H-paniculata_contig17332.4078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
MQAVADATLWHRRLGQLIRKSLDLLKKRDHNGMSLDGTVSDCDVCAVGKS
HQLAHPKTADHKVKHPFQLIFTDLMGPITPEALGGFQYVSTISDEHTKLT
KPYLLKSK
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mRNA from alignment at H-paniculata_contig17332:1256..1579-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17332.4078.1 ID=mRNA_H-paniculata_contig17332.4078.1|Name=mRNA_H-paniculata_contig17332.4078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig17332:1256..1579- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCTGTGGCTGATGCCACCCTGTGGCATCGGCGGCTTGGACAACT
CATCCGCAAAAGCCTGGACCTTCTGAAGAAGCGGGACCACAATGGGATGA
GCTTGGATGGGACCGTTTCAGATTGCGACGTCTGCGCTGTGGGGAAGAGC
CACCAGCTGGCCCACCCCAAGACGGCCGATCACAAGGTCAAGCATCCCTT
CCAACTGATCTTCACAGACCTGATGGGGCCTATCACGCCGGAGGCACTCG
GGGGCTTTCAGTACGTCAGCACGATCTCCGACGAACACACCAAATTGACC
AAACCCTACCTGCTGAAGTCCAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17332:1256..1579-

>mRNA_H-paniculata_contig17332.4078.1 ID=mRNA_H-paniculata_contig17332.4078.1|Name=mRNA_H-paniculata_contig17332.4078.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig17332:1256..1579- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCTGTGGCTGATGCCACCCTGTGGCATCGGCGGCTTGGACAACT
CATCCGCAAAAGCCTGGACCTTCTGAAGAAGCGGGACCACAATGGGATGA
GCTTGGATGGGACCGTTTCAGATTGCGACGTCTGCGCTGTGGGGAAGAGC
CACCAGCTGGCCCACCCCAAGACGGCCGATCACAAGGTCAAGCATCCCTT
CCAACTGATCTTCACAGACCTGATGGGGCCTATCACGCCGGAGGCACTCG
GGGGCTTTCAGTACGTCAGCACGATCTCCGACGAACACACCAAATTGACC
AAACCCTACCTGCTGAAGTCCAAAATGCAAGCTGTGGCTGATGCCACCCT
GTGGCATCGGCGGCTTGGACAACTCATCCGCAAAAGCCTGGACCTTCTGA
AGAAGCGGGACCACAATGGGATGAGCTTGGATGGGACCGTTTCAGATTGC
GACGTCTGCGCTGTGGGGAAGAGCCACCAGCTGGCCCACCCCAAGACGGC
CGATCACAAGGTCAAGCATCCCTTCCAACTGATCTTCACAGACCTGATGG
GGCCTATCACGCCGGAGGCACTCGGGGGCTTTCAGTACGTCAGCACGATC
TCCGACGAACACACCAAATTGACCAAACCCTACCTGCTGAAGTCCAAA
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