prot_H-paniculata_contig17326.4074.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig17326.4074.1
Unique Nameprot_H-paniculata_contig17326.4074.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length339
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17326.4074.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.520e-23
Identity = 164/305 (53.77%), Postives = 174/305 (57.05%), Query Frame = 0 
Query:   38 RTADRIREEIAREPVLSLANLAGFEEAPGGGDGGGREERGSDGGSSGVGVNPEXXXXXXXXXXXXXXXXXXELGIPKSIAEIYEISNRNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTASPMNLSDKTDNNRGHNKQDSADLAAGAGVGGTAGHSLASDGTAITTVANIGGGXXXXXXXXXXLENGPAANYFSGRSKRQKGE-GCQGQSAGGLGLLLDRGKGVVEGGRGGDDTMEFMEDLGWLSKEQREALGHQN-SPAGGPTGGGSD-GTTPALDQSPPSGSNSLGGSTGEALG 339
            RTADRIR+EIAREPVLSLANLAGF   PG  +GG           SG  V   XXXXXXXXXXXXXXXXXX  GIPKSIAEIYEISNR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       AD   GA                                       GPAANYFSGR KRQKG+ G  GQ   GLGLL DRG+G  +G  G DDTMEFME+LGWLS EQREA+G Q  +PA        + G   A    PPSG+   G S  E LG
Sbjct:  817 RTADRIRDEIAREPVLSLANLAGFGGEPGADEGGXXXXX-----XSGSEVXXXXXXXXXXXXXXXXXXXXXXXGIPKSIAEIYEISNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXADAEGGASA------------------------------------TGPAANYFSGR-KRQKGDLGAGGQQ--GLGLLADRGRGAGDGRGGADDTMEFMENLGWLSHEQREAMGQQQGTPAXXXXXXXXESGANTAPQLEPPSGAGGAGSSVTEGLG 1071
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17326.4074.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE8_ECTSI6.520e-2353.77HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17326contigH-paniculata_contig17326:2615..5304 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17326.4074.1mRNA_H-paniculata_contig17326.4074.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig17326 2615..5306 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig17326.4074.1 ID=prot_H-paniculata_contig17326.4074.1|Name=mRNA_H-paniculata_contig17326.4074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=339bp
GGGAVGTAFTDMAVAAAVAAGNVAADAEKAAAVAAGARTADRIREEIARE
PVLSLANLAGFEEAPGGGDGGGREERGSDGGSSGVGVNPEDEEEAEEREE
GEDEEEEEELGIPKSIAEIYEISNRNRRRNKEKKKLRETVASNSPSRRPH
HPSSSPSSSAAAAPTASPMNLSDKTDNNRGHNKQDSADLAAGAGVGGTAG
HSLASDGTAITTVANIGGGGGAGTGAGAGLENGPAANYFSGRSKRQKGEG
CQGQSAGGLGLLLDRGKGVVEGGRGGDDTMEFMEDLGWLSKEQREALGHQ
NSPAGGPTGGGSDGTTPALDQSPPSGSNSLGGSTGEALG
back to top