mRNA_H-paniculata_contig17326.4074.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17326.4074.1
Unique NamemRNA_H-paniculata_contig17326.4074.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17326.4074.1 vs. uniprot
Match: D8LQE8_ECTSI (HRDC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQE8_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.520e-23
Identity = 164/305 (53.77%), Postives = 174/305 (57.05%), Query Frame = 1 
Query:  112 RTADRIREEIAREPVLSLANLAGFEEAPGGGDGGGREERGSDGGSSGVGVNPEXXXXXXXXXXXXXXXXXXELGIPKSIAEIYEISNRNRRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTASPMNLSDKTDNNRGHNKQDSADLAAGAGVGGTAGHSLASDGTAITTVANIGGGXXXXXXXXXXLENGPAANYFSGRSKRQKGE-GCQGQSAGGLGLLLDRGKGVVEGGRGGDDTMEFMEDLGWLSKEQREALGHQN-SPAGGPTGGGSD-GTTPALDQSPPSGSNSLGGSTGEALG 1017
            RTADRIR+EIAREPVLSLANLAGF   PG  +GG           SG  V   XXXXXXXXXXXXXXXXXX  GIPKSIAEIYEISNR   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       AD   GA                                       GPAANYFSGR KRQKG+ G  GQ   GLGLL DRG+G  +G  G DDTMEFME+LGWLS EQREA+G Q  +PA        + G   A    PPSG+   G S  E LG
Sbjct:  817 RTADRIRDEIAREPVLSLANLAGFGGEPGADEGGXXXXX-----XSGSEVXXXXXXXXXXXXXXXXXXXXXXXGIPKSIAEIYEISNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXXADAEGGASA------------------------------------TGPAANYFSGR-KRQKGDLGAGGQQ--GLGLLADRGRGAGDGRGGADDTMEFMENLGWLSHEQREAMGQQQGTPAXXXXXXXXESGANTAPQLEPPSGAGGAGSSVTEGLG 1071
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17326.4074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQE8_ECTSI6.520e-2353.77HRDC domain-containing protein n=2 Tax=Ectocarpus ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17326contigH-paniculata_contig17326:2615..5306 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue4.7e-23
Seed eggNOG ortholog2880.D8LQE8
KEGG rclassRC02795
KEGG koko:K02335,ko:K12591,ko:K12951,ko:K17680
KEGG TC3.A.3
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03018,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03018,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000175,GO:0000178,GO:0000460,GO:0000785,GO:0000956,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006284,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007549,GO:0008150,GO:0008152,GO:0008298,GO:0008334,GO:0008408,GO:0008409,GO:0009048,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010639,GO:0016070,GO:0016071,GO:0016072,GO:0016075,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022613,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032204,GO:0032205,GO:0032210,GO:0032211,GO:0032879,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033554,GO:0034061,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0034661,GO:0035327,GO:0040029,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043632,GO:0043633,GO:0043634,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045934,GO:0046483,GO:0046700,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051179,GO:0051641,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071025,GO:0071027,GO:0071028,GO:0071029,GO:0071030,GO:0071033,GO:0071034,GO:0071035,GO:0071043,GO:0071044,GO:0071046,GO:0071048,GO:0071704,GO:0071840,GO:0071897,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0140097,GO:0140098,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1902494,GO:1904356,GO:1904357,GO:1904872,GO:1905354,GO:2000112,GO:2000113,GO:2000278,GO:2000279,GO:2001251
EggNOG free text desc.3'-5' exonuclease activity
EggNOG OGsCOG0349@1,KOG2206@2759
EC2.7.7.7,3.6.4.12
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko03032,ko03400
Exons3
Model size1021
Cds size1017
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17326.4074.1prot_H-paniculata_contig17326.4074.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17326 2615..5304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.2291305-CDS-H-paniculata_contig17326:2614..29771622929365.2291305-CDS-H-paniculata_contig17326:2614..2977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17326 2615..2977 +
1691480831.8530624-CDS-H-paniculata_contig17326:2614..29771691480831.8530624-CDS-H-paniculata_contig17326:2614..2977Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17326 2615..2977 +
1622929365.2472036-CDS-H-paniculata_contig17326:4154..46431622929365.2472036-CDS-H-paniculata_contig17326:4154..4643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17326 4155..4643 +
1691480831.8652327-CDS-H-paniculata_contig17326:4154..46431691480831.8652327-CDS-H-paniculata_contig17326:4154..4643Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17326 4155..4643 +
1622929365.2620924-CDS-H-paniculata_contig17326:5139..53041622929365.2620924-CDS-H-paniculata_contig17326:5139..5304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17326 5140..5304 +
1691480831.8753476-CDS-H-paniculata_contig17326:5139..53041691480831.8753476-CDS-H-paniculata_contig17326:5139..5304Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17326 5140..5304 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17326.4074.1

>prot_H-paniculata_contig17326.4074.1 ID=prot_H-paniculata_contig17326.4074.1|Name=mRNA_H-paniculata_contig17326.4074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=339bp
GGGAVGTAFTDMAVAAAVAAGNVAADAEKAAAVAAGARTADRIREEIARE
PVLSLANLAGFEEAPGGGDGGGREERGSDGGSSGVGVNPEDEEEAEEREE
GEDEEEEEELGIPKSIAEIYEISNRNRRRNKEKKKLRETVASNSPSRRPH
HPSSSPSSSAAAAPTASPMNLSDKTDNNRGHNKQDSADLAAGAGVGGTAG
HSLASDGTAITTVANIGGGGGAGTGAGAGLENGPAANYFSGRSKRQKGEG
CQGQSAGGLGLLLDRGKGVVEGGRGGDDTMEFMEDLGWLSKEQREALGHQ
NSPAGGPTGGGSDGTTPALDQSPPSGSNSLGGSTGEALG
back to top

mRNA from alignment at H-paniculata_contig17326:2615..5306+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17326.4074.1 ID=mRNA_H-paniculata_contig17326.4074.1|Name=mRNA_H-paniculata_contig17326.4074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2692bp|location=Sequence derived from alignment at H-paniculata_contig17326:2615..5306+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGGGGCAGTGGGGACCGCATTCACCGATATGGCAGTGGCAGCGGC
AGTCGCCGCTGGTAATGTTGCGGCAGACGCGGAAAAGGCTGCAGCTGTTG
CAGCGGGCGCAAGGACGGCCGATCGCATCCGCGAAGAGATTGCACGAGAG
CCGGTGCTCTCGCTCGCGAACCTGGCTGGCTTTGAGGAGGCCCCGGGGGG
TGGCGATGGTGGTGGCCGTGAAGAGAGGGGGAGTGACGGCGGGAGTAGTG
GGGTAGGTGTGAACCCTGAAGACGAGGAGGAGGCGGAGGAGAGGGAAGAG
GGGGAGGACGAGGAAGAGGAGGAGGAGCTTGGGATACCCAAGAGCATTGC
GGAGATCTACGAGGTTTGTTTATTGATCATGAGACCTTTGGTTACGGTAC
GGTAGTAGTATTGGTATGCTGCATTGAAATGTTTACATTTTTTTTTTTTT
TGGAAGTGACGTGTTTTCCCCTAACACCCAAATAATCCGAAATCGGGTGA
AAATTATTGTTCATGGTTGAAAAATTCTCGAGGAGTTTTCCGTCGAAGAA
ATGGTTTGCTGTGTTGTATCTCTTGGCGTTTCAGACTACATAATACAATA
AAGTCATTGTCCATTGTTGTCATCCTCTCCATCCCCATCAATCCACCAAT
TGAAGGCCGCGTCGTAAGCGTCTCTGTCAACCGGGACCAAGTGGTCCAAA
AGCCCCTTACGTTGCCGTTTCCTGCTCCTGGTATATCCAATGTCTAAATC
TTTTCCCTCCAGCGCTTTCAACATTTGATTGTACCGCCTGAAGAGACTCT
GCCAAACCAACTCTAGGGTACCCGCATCATACTGCCCGGTACATGCTTCT
AACCTCCTCTACGAGAGCGTCTATCGTATGGTACCTGCTTCATAAGTAAG
TCAAGTATGTATCTGTGGGGTGACGCTTTTTTCGTTTACGACGTCCAAAC
ACATTGCGCATGCTACTCAATGAGAGGGTTTTATATTCCTGGGCAGGCAC
AGTCATCATCCATTTACGTGCTGTTTCCGTTCCAGGTATTCCCATGATTC
ACAGGTACTTGGTTGTAGATAAGGTGAGTTGCACCCGGCATGATGAAGAC
ATTATCCTTGCTTAAAGATGATTACTTCATGTAGCACACCGAGCAAACAG
CGCAAGCCATTCAGACACCATCACACCAGTCCAACGTGGGTGATATTGAG
TAGATGTGGATCAGACGTGGTAGTATAGACGGGGCGTTTCGATTCGTGCC
CCTTCCTTACTGATTTAATTTTGCTGGTATATTTACAATTGAAGATTACA
GTTAGCTGCATAAATCTCAGTATGGGTACAATGGAGTTATTGTATGAAGG
TAATAGTTATAGCCCAGCTAATTACTATGGCAGGATTAACTATTAACGGA
TGAGAAATTCGGTTAGTGAAATGGTGGATTGTTTAATTTCCATGGCGTCA
GTCAGTCACTCGTATATATGAAAACTATTATCCCTCCCCGCTCACCACCG
TCCTTGTTCCGTCCTATCCACCCGCACTCCATCCCTTCAGATCTCGAATC
GCAATAGGAGGCGCAACAAGGAAAAAAAGAAGCTGAGAGAGACGGTGGCG
TCAAATAGCCCAAGCCGCCGCCCCCACCATCCCTCCTCCTCTCCCTCCTC
CTCCGCCGCCGCCGCCCCAACAGCTTCCCCGATGAACCTCTCCGACAAAA
CGGACAACAACAGGGGTCACAACAAGCAAGATTCGGCGGACTTGGCTGCG
GGAGCTGGAGTCGGGGGCACGGCAGGGCATTCTTTGGCGAGCGATGGCAC
TGCTATTACCACCGTCGCCAACATTGGAGGAGGAGGAGGAGCGGGGACAG
GAGCGGGGGCCGGTTTGGAGAACGGTCCCGCGGCTAACTACTTCTCCGGG
CGCAGCAAGAGGCAGAAGGGAGAGGGTTGCCAGGGGCAGTCGGCGGGGGG
GCTCGGGCTGCTGCTGGACAGGGGTAAGGGTGTTGTGGAAGGAGGACGTG
GCGGTGATGACACAATGGAGTTCATGGAGGTGAGGATGGCGGTGGCGGTG
GTGGGGGCGGGTCGGGGGGCGAGGGGGGAAGGAGGGGAAACTGACTTCAA
TTTGCACTTGTATACACTTGTCGGCAAAATCAAGTCAATAGAGGGCGGTC
ATTTCACCGAGTGAATGTTATTACTGTAGTAAATTGACCCTGCCACAGTC
AGATGAATTGAAACTATGAACGTCATGTCGTAACTCCATGGTACCCATGT
TGAGGTTGTGTAGCTGACGTGAATCTGCACTTGTATATATTTACCAGCAA
CTAAAACCCACAAGAGGCGGCGGGGAGCGGCCAGATGCATGTGCGTTTTA
CTGTAGTGATGAATGGAAGCTGCTGTGAAGGTTTGTCTACCTCATGTGGG
AGTAGTGTTTTGATTTGGTTTGGTGTCGTGAGCGTGGGTGGGTGGTTGGG
GCTATTTTGCTTGTCCATATATATGTACGGTGTCCAACGCCTTGGCTTGT
GTGTTCGATCGACTATTGACGACAGGATCTAGGGTGGCTGAGCAAGGAGC
AACGTGAGGCATTAGGCCATCAGAATTCACCCGCCGGAGGACCCACTGGC
GGGGGCAGTGATGGCACGACCCCCGCGCTCGACCAGTCTCCGCCTAGCGG
ATCTAATAGCCTGGGGGGATCCACCGGAGAGGCGCTGGGAGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17326:2615..5306+

>mRNA_H-paniculata_contig17326.4074.1 ID=mRNA_H-paniculata_contig17326.4074.1|Name=mRNA_H-paniculata_contig17326.4074.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2034bp|location=Sequence derived from alignment at H-paniculata_contig17326:2615..5306+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGAGGGGCAGTGGGGACCGCATTCACCGATATGGCAGTGGCAGCGGC
AGTCGCCGCTGGTAATGTTGCGGCAGACGCGGAAAAGGCTGCAGCTGTTG
CAGCGGGCGCAAGGACGGCCGATCGCATCCGCGAAGAGATTGCACGAGAG
CCGGTGCTCTCGCTCGCGAACCTGGCTGGCTTTGAGGAGGCCCCGGGGGG
TGGCGATGGTGGTGGCCGTGAAGAGAGGGGGAGTGACGGCGGGAGTAGTG
GGGTAGGTGTGAACCCTGAAGACGAGGAGGAGGCGGAGGAGAGGGAAGAG
GGGGAGGACGAGGAAGAGGAGGAGGAGCTTGGGATACCCAAGAGCATTGC
GGAGATCTACGAGGGGGGAGGGGCAGTGGGGACCGCATTCACCGATATGG
CAGTGGCAGCGGCAGTCGCCGCTGGTAATGTTGCGGCAGACGCGGAAAAG
GCTGCAGCTGTTGCAGCGGGCGCAAGGACGGCCGATCGCATCCGCGAAGA
GATTGCACGAGAGCCGGTGCTCTCGCTCGCGAACCTGGCTGGCTTTGAGG
AGGCCCCGGGGGGTGGCGATGGTGGTGGCCGTGAAGAGAGGGGGAGTGAC
GGCGGGAGTAGTGGGGTAGGTGTGAACCCTGAAGACGAGGAGGAGGCGGA
GGAGAGGGAAGAGGGGGAGGACGAGGAAGAGGAGGAGGAGCTTGGGATAC
CCAAGAGCATTGCGGAGATCTACGAGATCTCGAATCGCAATAGGAGGCGC
AACAAGGAAAAAAAGAAGCTGAGAGAGACGGTGGCGTCAAATAGCCCAAG
CCGCCGCCCCCACCATCCCTCCTCCTCTCCCTCCTCCTCCGCCGCCGCCG
CCCCAACAGCTTCCCCGATGAACCTCTCCGACAAAACGGACAACAACAGG
GGTCACAACAAGCAAGATTCGGCGGACTTGGCTGCGGGAGCTGGAGTCGG
GGGCACGGCAGGGCATTCTTTGGCGAGCGATGGCACTGCTATTACCACCG
TCGCCAACATTGGAGGAGGAGGAGGAGCGGGGACAGGAGCGGGGGCCGGT
TTGGAGAACGGTCCCGCGGCTAACTACTTCTCCGGGCGCAGCAAGAGGCA
GAAGGGAGAGGGTTGCCAGGGGCAGTCGGCGGGGGGGCTCGGGCTGCTGC
TGGACAGGGGTAAGGGTGTTGTGGAAGGAGGACGTGGCGGTGATGACACA
ATGGAGTTCATGGAGATCTCGAATCGCAATAGGAGGCGCAACAAGGAAAA
AAAGAAGCTGAGAGAGACGGTGGCGTCAAATAGCCCAAGCCGCCGCCCCC
ACCATCCCTCCTCCTCTCCCTCCTCCTCCGCCGCCGCCGCCCCAACAGCT
TCCCCGATGAACCTCTCCGACAAAACGGACAACAACAGGGGTCACAACAA
GCAAGATTCGGCGGACTTGGCTGCGGGAGCTGGAGTCGGGGGCACGGCAG
GGCATTCTTTGGCGAGCGATGGCACTGCTATTACCACCGTCGCCAACATT
GGAGGAGGAGGAGGAGCGGGGACAGGAGCGGGGGCCGGTTTGGAGAACGG
TCCCGCGGCTAACTACTTCTCCGGGCGCAGCAAGAGGCAGAAGGGAGAGG
GTTGCCAGGGGCAGTCGGCGGGGGGGCTCGGGCTGCTGCTGGACAGGGGT
AAGGGTGTTGTGGAAGGAGGACGTGGCGGTGATGACACAATGGAGTTCAT
GGAGGATCTAGGGTGGCTGAGCAAGGAGCAACGTGAGGCATTAGGCCATC
AGAATTCACCCGCCGGAGGACCCACTGGCGGGGGCAGTGATGGCACGACC
CCCGCGCTCGACCAGTCTCCGCCTAGCGGATCTAATAGCCTGGGGGGATC
CACCGGAGAGGCGCTGGGAGATCTAGGGTGGCTGAGCAAGGAGCAACGTG
AGGCATTAGGCCATCAGAATTCACCCGCCGGAGGACCCACTGGCGGGGGC
AGTGATGGCACGACCCCCGCGCTCGACCAGTCTCCGCCTAGCGGATCTAA
TAGCCTGGGGGGATCCACCGGAGAGGCGCTGGGA
back to top