mRNA_H-paniculata_contig17312.4070.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17312.4070.1
Unique NamemRNA_H-paniculata_contig17312.4070.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: A0A6H5JZ81_9PHAE (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ81_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 3.310e-50
Identity = 76/97 (78.35%), Postives = 84/97 (86.60%), Query Frame = 1
Query:    4 VKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFP 294
            V++RP GVPLLTV NHCS +DDP VLVG+LPA +T++P+ MRWTICAQEICFKWT A   FGSAKVMPIARG GID RLLLNFYRRLL GGWCHIFP
Sbjct:   92 VEERPSGVPLLTVCNHCSPVDDPGVLVGMLPARVTVRPELMRWTICAQEICFKWTAAGTGFGSAKVMPIARGSGIDQRLLLNFYRRLLGGGWCHIFP 188          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: D7G278_ECTSI (Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G278_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 6.300e-37
Identity = 58/101 (57.43%), Postives = 77/101 (76.24%), Query Frame = 1
Query:    4 VKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFPGKST 306
            V+DRP G PLLTV+NH STLDDPAV+  +LP  + ++P  MRW++C+QEICF+    ++ FG+ KV+PI RG G+D +LLLNF R+L +GGWCHIFP   T
Sbjct:   33 VRDRPEGEPLLTVANHASTLDDPAVMAVLLPWDIVVRPRLMRWSVCSQEICFETRAIASFFGAGKVLPIERGGGVDQKLLLNFSRKLAAGGWCHIFPEGKT 133          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: A0A835ZCU4_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCU4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 4.700e-32
Identity = 59/99 (59.60%), Postives = 72/99 (72.73%), Query Frame = 1
Query:    1 AVKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLT-MKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFP 294
            AV+ R  G PL+TVSNH   LDDP +L  ++P  L  +KP+ MR+TIC+Q+ICF   +  + FG+AKVMPIARGEGID RLL N  RRL SG WCHIFP
Sbjct:  149 AVEARGNGTPLITVSNHACPLDDPCMLAALMPFRLAALKPELMRFTICSQDICFNNGVLESFFGAAKVMPIARGEGIDQRLLQNMQRRLASGAWCHIFP 247          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: A0A835ZF50_9STRA (Tafazzin family protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF50_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.100e-30
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    4 VKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFPGKST 306
            +K RP G PLLTV NH STLDDPA+     P ++ + P +MRWTIC+QEICF   + +A FGS KV+PI RG GID   LL F RR+ +G WCHIFP   T
Sbjct:   35 IKYRPEGKPLLTVGNHNSTLDDPALFGAFAPWSVDLTPRQMRWTICSQEICF---MNAAFFGSGKVLPIERGGGIDQVQLLKFARRMAAGTWCHIFPEGRT 132          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: A0A7S2S0C2_9STRA (Tafazzin family protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S0C2_9STRA)

HSP 1 Score: 109 bits (273), Expect = 3.450e-26
Identity = 48/98 (48.98%), Postives = 63/98 (64.29%), Query Frame = 1
Query:    1 AVKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFP 294
            AV+ RP   PL+TV+NH S LDDPA+L  +LP  + ++P + RW IC QE+CFK  + +A  G  KV+PI RG G+D   LL   R   +G W HIFP
Sbjct:  112 AVEGRPEDTPLITVANHASVLDDPALLAAMLPWRIVLQPSKHRWAICTQEVCFKDDLIAAFVGCGKVLPIKRGAGVDQPQLLELCRHAAAGRWVHIFP 209          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: A0A6A5P9A6_LUPAL (PlsC domain-containing protein n=3 Tax=Lupinus TaxID=3869 RepID=A0A6A5P9A6_LUPAL)

HSP 1 Score: 107 bits (266), Expect = 7.390e-25
Identity = 51/106 (48.11%), Postives = 69/106 (65.09%), Query Frame = 1
Query:    1 AVKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFPGKSTRPHD 318
            A+ +RP G PLLTVSNH +++DDP V+  +LP  + M    +RWTICA + CFK  + SA F S KV+P+ARG+GI  R +     +L  GGW HIFP + +R  D
Sbjct:  130 ALLERPRGKPLLTVSNHVASMDDPLVIASLLPPQVLMDAKNLRWTICATDRCFKNPVTSAFFQSLKVLPVARGDGIYQRGMDTAILKLNHGGWVHIFP-EGSRSRD 234          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: A0A0P0VCI5_ORYSJ (Tafazzin family protein n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=A0A0P0VCI5_ORYSJ)

HSP 1 Score: 103 bits (258), Expect = 7.610e-25
Identity = 47/106 (44.34%), Postives = 71/106 (66.98%), Query Frame = 1
Query:    1 AVKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFPGKSTRPHD 318
            A+++RP G PLLTVSNH + +DDP V+  ILP ++ ++  ++RWT+CA + CF   I S  F S KV+P++RG+GI  + +     +L +GGW HIFP + +R  D
Sbjct:  148 ALQERPKGKPLLTVSNHVAAMDDPFVIASILPPSVMLEAQKLRWTLCASDRCFTNPILSTFFRSVKVLPVSRGDGIYQKGMDMALSKLNNGGWVHIFP-EGSRSKD 252          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: UPI001CC82877 (tafazzin n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC82877)

HSP 1 Score: 105 bits (262), Expect = 1.760e-24
Identity = 47/106 (44.34%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 AVKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFPGKSTRPHD 318
            A++ RP G PL+TVSNH +++DDP V+  +LP +  +   R+RWT+CA + CFK  + SA F   KV+P++RG+G+  + L     +L SGGW HIFP + +R  D
Sbjct:  124 ALQQRPEGKPLITVSNHVASMDDPLVIASLLPPSFMLDAHRLRWTLCATDRCFKNPVTSAFFQCVKVLPVSRGDGVYQKGLDMALSKLNSGGWVHIFP-EGSRSRD 228          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: A0A7S2NY36_9STRA (Tafazzin family protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NY36_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.510e-24
Identity = 46/92 (50.00%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   31 LLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFPGKST 306
            ++TVSNH ST+DDP +   +LP  L ++P ++RWT+C+QEICFK    +A FG+ KV+PI R  GID  LLL F R++  G W H+FP   T
Sbjct:  154 VITVSNHNSTIDDPVLFGLLLPWDLKLRPMKIRWTLCSQEICFKNPAIAAMFGAGKVLPIRRQGGIDQPLLLEFARKIAGGDWVHVFPEGKT 245          
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Match: A0A7C9D844_OPUST (Tafazzin family protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9D844_OPUST)

HSP 1 Score: 104 bits (259), Expect = 2.620e-24
Identity = 48/106 (45.28%), Postives = 70/106 (66.04%), Query Frame = 1
Query:    1 AVKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQEICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFPGKSTRPHD 318
            A++DR    PL+TVSNH +++DDP V+  +LP  + M   ++RWT+CA + CFK  + SA F S KV+P++RGEGI  + L     +L +GGW HIFP + +R  D
Sbjct:   60 ALRDRSKDKPLITVSNHVASMDDPLVIASLLPPRVLMDAQQLRWTLCASDRCFKNPVTSAFFRSVKVLPVSRGEGIYQKGLDLAISKLNNGGWVHIFP-EGSRSRD 164          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17312.4070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZ81_9PHAE3.310e-5078.35Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G278_ECTSI6.300e-3757.43Tafazzin family protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCU4_9STRA4.700e-3259.60Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZF50_9STRA4.100e-3056.44Tafazzin family protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2S0C2_9STRA3.450e-2648.98Tafazzin family protein n=1 Tax=Rhizochromulina ma... [more]
A0A6A5P9A6_LUPAL7.390e-2548.11PlsC domain-containing protein n=3 Tax=Lupinus Tax... [more]
A0A0P0VCI5_ORYSJ7.610e-2544.34Tafazzin family protein n=2 Tax=Oryza sativa subsp... [more]
UPI001CC828771.760e-2444.34tafazzin n=1 Tax=Telopea speciosissima TaxID=54955... [more]
A0A7S2NY36_9STRA2.510e-2450.00Tafazzin family protein n=1 Tax=Leptocylindrus dan... [more]
A0A7C9D844_OPUST2.620e-2445.28Tafazzin family protein n=1 Tax=Opuntia streptacan... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17312contigH-paniculata_contig17312:626..1596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score175.6
Seed ortholog evalue1.2e-41
Seed eggNOG ortholog2880.D7FH08
KEGG rclassRC00004,RC00037
KEGG koko:K13511
KEGG ReactionR09037
KEGG Pathwayko00564,map00564
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cardiolipin acyl-chain remodeling
EggNOG OGsKOG2847@1,KOG2847@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01004
Exons2
Model size318
Cds size318
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929364.6210983-CDS-H-paniculata_contig17312:625..7451622929364.6210983-CDS-H-paniculata_contig17312:625..745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17312 626..745 -
1691480831.6006827-CDS-H-paniculata_contig17312:625..7451691480831.6006827-CDS-H-paniculata_contig17312:625..745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17312 626..745 -
1622929364.633585-CDS-H-paniculata_contig17312:1398..15961622929364.633585-CDS-H-paniculata_contig17312:1398..1596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17312 1399..1596 -
1691480831.6109056-CDS-H-paniculata_contig17312:1398..15961691480831.6109056-CDS-H-paniculata_contig17312:1398..1596Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17312 1399..1596 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17312.4070.1prot_H-paniculata_contig17312.4070.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17312 626..1596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17312.4070.1

>prot_H-paniculata_contig17312.4070.1 ID=prot_H-paniculata_contig17312.4070.1|Name=mRNA_H-paniculata_contig17312.4070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
AVKDRPPGVPLLTVSNHCSTLDDPAVLVGILPATLTMKPDRMRWTICAQE
ICFKWTIASAAFGSAKVMPIARGEGIDHRLLLNFYRRLLSGGWCHIFPGK
STRPHD
back to top

mRNA from alignment at H-paniculata_contig17312:626..1596-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17312.4070.1 ID=mRNA_H-paniculata_contig17312.4070.1|Name=mRNA_H-paniculata_contig17312.4070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=971bp|location=Sequence derived from alignment at H-paniculata_contig17312:626..1596- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGAAGGATAGGCCGCCGGGCGTACCGCTGTTGACCGTGTCCAATCA CTGCTCTACCCTGGACGATCCCGCAGTGCTGGTGGGCATACTACCGGCTA CGCTGACTATGAAACCGGATCGCATGCGATGGACGATTTGCGCGCAGGAA ATATGCTTCAAGTGGACCATCGCTTCTGCTGCCTTCGGTTCTGCGAAGGT GTTGTTGTTGTTGTTGTTGTGCTGGTGCTGGTGACTTTTGCCAAATATAG AAAATAGATAGTGTTTTTTGTTAACCTTGACGTTGAACAAACCACACTGA ATAAATAAAAACTTGAGCATATTTTCAATGTAACAGAAAAAAAAAAACTA GACAACGACATGCCTCAAGTTTTTTTTGTTTTTTTTTAGTTCTTTGGTGT TTAGATTAGTCGAACTCCAAGGCTGAGTGAGCATTTACTTTTTTTTTTTG TCGTGACGATTTTTGCCTGAGCTACTTTTTCACGTCTTCAGCACAACCCA GCAAACCCTCGTTAGTTCGCTTCTTCTACTAGATCTGAGTATTTTTTATA TAGCGTATTTTTATTTATAGGTGTGCCATGCAACTAACCAATTAAAATCA ATGTCATAGCGCCTCAGTAGCAATGCATTTATTGACTCGTTCATTCAGGG CGTATCTACCAGCAATATAATAAACCACCTGGACCCCTTGTACCACATTT CGTAGCAAAGAGTCTTGTGCATTTGCCTCTATCGTTCAAACGTACCTGGT ATCTAAATACGCCTCGAAATATATCGGAATTCAATTATCCCTCCCATTAT CGCCTCCCCCCCGCTCCCTCATGCTCGTCGTCGCGACGAAACGTACGGCA GGTGATGCCCATCGCGCGGGGAGAGGGGATAGACCACCGACTGTTGCTCA ACTTCTATCGCAGATTGCTTTCTGGGGGATGGTGCCACATATTTCCAGGT AAATCTACACGACCACACGAT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17312:626..1596-

>mRNA_H-paniculata_contig17312.4070.1 ID=mRNA_H-paniculata_contig17312.4070.1|Name=mRNA_H-paniculata_contig17312.4070.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig17312:626..1596- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGGTGAAGGATAGGCCGCCGGGCGTACCGCTGTTGACCGTGTCCAATCA
CTGCTCTACCCTGGACGATCCCGCAGTGCTGGTGGGCATACTACCGGCTA
CGCTGACTATGAAACCGGATCGCATGCGATGGACGATTTGCGCGCAGGAA
ATATGCTTCAAGTGGACCATCGCTTCTGCTGCCTTCGGTTCTGCGAAGGC
GGTGAAGGATAGGCCGCCGGGCGTACCGCTGTTGACCGTGTCCAATCACT
GCTCTACCCTGGACGATCCCGCAGTGCTGGTGGGCATACTACCGGCTACG
CTGACTATGAAACCGGATCGCATGCGATGGACGATTTGCGCGCAGGAAAT
ATGCTTCAAGTGGACCATCGCTTCTGCTGCCTTCGGTTCTGCGAAGGTGA
TGCCCATCGCGCGGGGAGAGGGGATAGACCACCGACTGTTGCTCAACTTC
TATCGCAGATTGCTTTCTGGGGGATGGTGCCACATATTTCCAGGTAAATC
TACACGACCACACGATGTGATGCCCATCGCGCGGGGAGAGGGGATAGACC
ACCGACTGTTGCTCAACTTCTATCGCAGATTGCTTTCTGGGGGATGGTGC
CACATATTTCCAGGTAAATCTACACGACCACACGAT
back to top