mRNA_H-paniculata_contig17308.4068.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17308.4068.1
Unique NamemRNA_H-paniculata_contig17308.4068.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: A0A6H5L2L7_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L7_9PHAE)

HSP 1 Score: 187 bits (474), Expect = 7.190e-47
Identity = 188/568 (33.10%), Postives = 235/568 (41.37%), Query Frame = 1 
Query: 1327 RKPVLDALSTLLAQMEESNVALALTVSRSYHSEGDRSRVRPSSARARYATKNPETGVMTCDSKVSGCASGMGGKTVEPAELDPLYACETPACSKPKTLGSSELCGEALTPTTVVELIRAGGLEEKMGAFAELAGGLGGGTALPGFGGGQQCVSELLSKVLD--ADDV--------------SGKGHVAGYDSGLAADFRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNE-------ETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIRPAIVEGFVSSQPSQVIDSPPKGFGAGGFSC-GPLKATWQGTGSDGR------RALVERVLTVRAGATCQFHEPVTGRTTGDREALSKDTTYHHHSLHMKSRERYSKEGLHEKPFTGMKHDRHNEDVRYDLVGIILHQGQTLDSGHYTFALNATF-DSARFTSATATRDGPAVDSVSCSPTARLKSTADSTQCSDKIVTDASVGADDLQGRLSSGLRTERGAGMDKRPSVGEDHSPGFVLFDDERVRWLSSEETDSVLQ 2937
            R PVL AL  +L +ME  N AL     +   + G ++ V P +         PE       S  SG  S    KT +  +  PL         +P       +  E++ PT++VELI  G L       A L GG  G T    FG GQ CVSELL K L    DD               SG  H + +  GLA  FRG LC R +C+ECER     E F EL LPPL+  +       + A    +  G  S     RTIQ L++ +   ESL G NKVWCEACRQWTEAERR S+H  P LL+LH+RP   +    S P     +  +  G    S  G ++      G+DGR         +ER L VR  A CQFH    G                  S                   TG   D  + D+ YDL+G ILHQGQTL SGHYTFA+NA   D A F +          D                                D +  +  G      AG     + G+   P F LFDD  VRWLS EE  +VL+
Sbjct:   55 RNPVLVALEQVLGEMETRNRAL---FQQQLVAAGSQTAVSPPA--------EPE-------STSSGATSSAESKTCQWFDQTPL---------RPSASTGEGVRVESIAPTSLVELIHGGWLSADR---ARLGGGGAGTTGSTDFGTGQACVSELLGKFLGLVVDDXXXXXXXXXXXXXXRSGGTHSSSF-CGLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPQHAPPLTAQRAIPAAENDGGPSLRGRHRTIQTLIDGVFERESLAGNNKVWCEACRQWTEAERRSSVHSPPGLLALHVRPGTRK---RSSPCLYPKALARASGGAPDSVVGDVRR-----GADGRLPAGSREEAIERTLVVRKAARCQFHG---GGVNSXXXXXXXXXXXSVDSC------------------TGQLCD--SGDIFYDLIGAILHQGQTLASGHYTFAINAAAGDWASFLAQQXXXXXXXADR-------------------------------DNRALVQQGPPGATAAGS----TYGK---PDFALFDDATVRWLSLEEERAVLR 522
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: D7FM48_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM48_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 2.850e-29
Identity = 137/389 (35.22%), Postives = 167/389 (42.93%), Query Frame = 1 
Query: 1006 PPFVGLKNLGNTCYVNAVVQALHACLRAVAKLREATAG-RDNAPVGREAESSSSPPSAYRVCNVEGQSERLARTDELFAVPSSAYATNEAEESLVAEVSSPENSSRYDRKPVLDALSTLLAQMEESNVALALTVSRSYHSEGDRSRVRPSSARARYATKNPETGVMTCDSKVSGCASGMGGKTVEPAELDPLYACETPACSKPKTLGSSELCGEALTPTTVVELIRAGGLEEKMGAFAELAGGLGGGTALPGFGGGQQCVSELLSKVLD--ADD----VSGKGHVAGYDSG---------LAADFRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAED--------EGDGQGCSSALPELRTIQDLLETILRSESLGGTNKV 2100
            PPFVGLKNLG TCYVNAV+QAL AC   +   R    G  D    G E  S S+PP+A                    A P  A A +E    LVA V+  +      R PVL AL  +L +ME  N AL+            +  V   S  A  +   PE       S  SG  S    KT +P +  PL         +P       +  EA+ PT +VELIR G L       + L GG  G T    FG GQ CVSELL K L    DD     +  G V G  SG         LA  FRG LC R +C+ECER     E F EL LPPL+   + A            +  G  S     RT+Q L++ +   ESL G NK+
Sbjct:  135 PPFVGLKNLGETCYVNAVLQALTACHGVLTSSRGGGGGWHDVGSEGSEG-SCSTPPAAD-------------------AAP--AGAASEGTAVLVAGVTGTQ------RNPVLAALEQVLGEMETRNRALS-----------QQQLVAFGSQTAVSSPAEPE-------STGSGATSSPESKTCQPYDQTPL---------RPSASTGEGVLVEAIAPTFLVELIRGGWLSADR---SRLGGGGAGATGSTEFGTGQACVSELLGKFLGLVVDDGGSGATSLGGVGGRRSGGSHSSSFCCLAQAFRGTLCARTLCVECERDRTAREDFTELTLPPLLPPPQHAPPLTAQGAIPAAENDGGPSLRGRRRTMQTLVDGVFEGESLAGNNKL 465
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: A0A8J4XEX1_CLAMG (Ubiquitin carboxyl-terminal hydrolase 1 n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4XEX1_CLAMG)

HSP 1 Score: 69.7 bits (169), Expect = 1.680e-8
Identity = 33/106 (31.13%), Postives = 58/106 (54.72%), Query Frame = 1 
Query: 1870 FRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIR 2187
            F+G L +R  C+ECE ++   E F+++ +P  VQ EET+  E   +      PE +T++  +      E + G +K +CE C  +TEAER       P ++++H++
Sbjct:  419 FQGQLVLRTRCLECECYTERREDFQDISVP--VQEEETSYSEASSEISPDPKPEQKTLRWAISQFASVERIVGQDKYFCETCHHYTEAERSLLFDKTPEVVTIHLK 522
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: A0A3B4DKK8_PYGNA (Ubiquitin carboxyl-terminal hydrolase n=6 Tax=Serrasalmidae TaxID=42495 RepID=A0A3B4DKK8_PYGNA)

HSP 1 Score: 69.3 bits (168), Expect = 3.050e-8
Identity = 108/470 (22.98%), Postives = 179/470 (38.09%), Query Frame = 1 
Query:  976 IPCPQPPLLP-------PPFVGLKNLGNTCYVNAVVQALHAC---------LRAVAKLREATAGRDNAPVGREAES--SSSPPSAYRVCNVEGQSERLARTDELFAVPSSAYATNEAE-------ESLVAEVSSPENSSRYDRKPVLDALSTLLAQ-----------MEESNVALALTVSRSYHSEGDRSRVRPSSARARYATKNPE--------------------------TGVMTCDSKVSGCASGMGGKTVEPAELDPLYACETP--ACSKPKTLGSSELCGEALTPTTVVELIRAGGLEEKMGAFAELAGGL--GGGTALPGFGGGQQCVSELLSKVLDADDVSGKGHVAGYDSGLAADFRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIR 2187
            +P P P  LP        PFVGL NLGNTCY+N+++Q L+ C         L  ++KL++    +++ P   E ES   S+P     + ++      L +    F      Y+  E         ++L       E   ++D + VL  +   + +            +ES      T     +++G  S  R S   A  A K P+                          TG   CD +      G G +  E        +  TP     + K    S L      P+   +    G +   +G  AE           +    G G+   +E  ++ LD    S K    G D  L   F+G L +R  C+ECE ++   E F+++ +P  VQ +ET   +   +      PE +T++  +      E + G +K +CE C  +TEAER       P ++++H++
Sbjct:   61 VPVPCPSSLPCGKRESLAPFVGLNNLGNTCYLNSILQVLYYCPGFKDAVKLLYHLSKLKDKQ--KEDGPKNEEGESCDDSTPVHMELLSSLYSLISSLEQLQSSFLFNPEKYSEGELATPPRKVLKTLRQLNPMYEGYLQHDAQEVLQCILAYIQEACDTIKKEQGYQDESTDNFTATQEEEDNADGQLSGKRKSDTEAGNAKKKPKSQSRPKKSETENKPFTRSKRKSSGDVTGNSLCDQRDETQGEGEGKEEKERGNNTEEKSEGTPKEVNKRKKRAKLSWLKSSGKQPSIFSKFRSMGRISSHVGDRAESKEDQVRTSDDSQDSQGKGKAIETEERTENLD-QTASKKEERQGLDV-LKQLFQGQLVLRTRCLECECYTERREDFQDISVP--VQEDETNCSDSSSEISPDPKPEQKTLKWAISQFASVERIVGQDKYFCETCHHYTEAERSLLFDKTPEVVTIHLK 524
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: A0A556TY37_BAGYA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Bagarius yarrelli TaxID=175774 RepID=A0A556TY37_BAGYA)

HSP 1 Score: 68.9 bits (167), Expect = 3.980e-8
Identity = 33/106 (31.13%), Postives = 58/106 (54.72%), Query Frame = 1 
Query: 1870 FRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIR 2187
            F+G L +R  C+ECE ++   E F+++ +P  VQ +ET+  E   Q      PE +T++  +      E + G +K +CE C  +TEAER       P ++++H++
Sbjct:  421 FQGQLVLRTRCLECECYTERREDFQDISVP--VQEDETSCSESSSQVSPDPKPEQKTLRWAISQFASVERIVGQDKYFCETCHHYTEAERSLLFDKTPDIVTIHLK 524
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: A0A673INV6_9TELE (Ubiquitin carboxyl-terminal hydrolase n=11 Tax=Cyprininae TaxID=2743694 RepID=A0A673INV6_9TELE)

HSP 1 Score: 68.6 bits (166), Expect = 5.260e-8
Identity = 37/135 (27.41%), Postives = 65/135 (48.15%), Query Frame = 1 
Query: 1783 SELLSKVLDADDVSGKGHVAGYDSGLAADFRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIR 2187
            SE  S+  +     GK         L   F+G L +R  C+ECE  +   E F+++ +P  VQ +E +  +   +      PEL+T++  +      E + G +K +CE C  +TEAER       P ++++H++
Sbjct:  390 SENESRTQEVKQSLGKNKEQSGLDVLKWMFQGQLVLRTRCLECECFTERREDFQDISVP--VQEDENSSSDSSSEISPDPKPELKTLKWAISQFASVERIVGQDKYFCETCHHYTEAERSLLFDKTPEVITIHLK 522
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: A0A5A9NUW3_9TELE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9NUW3_9TELE)

HSP 1 Score: 68.2 bits (165), Expect = 6.900e-8
Identity = 32/106 (30.19%), Postives = 59/106 (55.66%), Query Frame = 1 
Query: 1870 FRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIR 2187
            F+G L +R  C+ECE ++   E F+++ +P  VQ +ET+  +   +      PEL+T++  +      E + G +K +CE C  +TEAER       P ++++H++
Sbjct:  417 FQGQLLLRTRCLECECYTERREDFQDISVP--VQEDETSCSDSSSEISPDPKPELKTLKWAISQFASVERIVGQDKYFCENCHHYTEAERSLLFDKTPEVVTIHLK 520
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: A0A6P6PJL5_CARAU (Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Cyprinidae TaxID=7953 RepID=A0A6P6PJL5_CARAU)

HSP 1 Score: 67.8 bits (164), Expect = 9.060e-8
Identity = 31/106 (29.25%), Postives = 57/106 (53.77%), Query Frame = 1 
Query: 1870 FRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIR 2187
            F+G L +R  C+ECE  +   E F+++ +P + +N+  + D    Q      PEL+T++  +      E + G +K +CE C  +TEAER       P ++++H++
Sbjct:  415 FQGQLVLRTRCLECECFTERREDFQDISVP-VQENDNISSDSDSSQISPDPKPELKTLKWAISQFASVERIMGEDKYFCETCHHYTEAERSLLFDKTPEVITIHLK 519
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: A0A670JI43_PODMU (Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Lacertinae TaxID=162266 RepID=A0A670JI43_PODMU)

HSP 1 Score: 67.8 bits (164), Expect = 9.090e-8
Identity = 32/106 (30.19%), Postives = 60/106 (56.60%), Query Frame = 1 
Query: 1870 FRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIR 2187
            F+G L +R  C+ECE  +   E F+++ +P  VQ EE ++ E + +       E++T++  +      E + G +K +CE CR +TEAER      +P ++++H++
Sbjct:  432 FQGQLVLRTRCLECESFTERREDFQDISVP--VQKEEFSKTEENSEISPDPKTEVKTLKWAISQFASVERIVGEDKYFCENCRHYTEAERSLLFDKMPEVITIHLK 535
[Close]
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Match: UPI001955D4BE (ubiquitin carboxyl-terminal hydrolase 1 n=2 Tax=Cyprinoidei TaxID=30727 RepID=UPI001955D4BE)

HSP 1 Score: 67.8 bits (164), Expect = 9.110e-8
Identity = 31/106 (29.25%), Postives = 58/106 (54.72%), Query Frame = 1 
Query: 1870 FRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGDGQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSLHHLPRLLSLHIR 2187
            F+G L +R  C+ECE  +   E F+++ +P  VQ +ET+  +   +      P+L+T++  +      E + G +K +CE C  +TEAER       P ++++H++
Sbjct:  423 FQGQLVLRTRCLECECFTERREDFQDISVP--VQEDETSSPDSSSEISPDPKPDLKTLKWAISQFASVERIVGQDKYFCETCHHYTEAERSLLFDKTPEVVTIHLK 526
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17308.4068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2L7_9PHAE7.190e-4733.10USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM48_ECTSI2.850e-2935.22USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A8J4XEX1_CLAMG1.680e-831.13Ubiquitin carboxyl-terminal hydrolase 1 n=1 Tax=Cl... [more]
A0A3B4DKK8_PYGNA3.050e-822.98Ubiquitin carboxyl-terminal hydrolase n=6 Tax=Serr... [more]
A0A556TY37_BAGYA3.980e-831.13Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Baga... [more]
A0A673INV6_9TELE5.260e-827.41Ubiquitin carboxyl-terminal hydrolase n=11 Tax=Cyp... [more]
A0A5A9NUW3_9TELE6.900e-830.19Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Trip... [more]
A0A6P6PJL5_CARAU9.060e-829.25Ubiquitin carboxyl-terminal hydrolase n=4 Tax=Cypr... [more]
A0A670JI43_PODMU9.090e-830.19Ubiquitin carboxyl-terminal hydrolase n=3 Tax=Lace... [more]
UPI001955D4BE9.110e-829.25ubiquitin carboxyl-terminal hydrolase 1 n=2 Tax=Cy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17308contigH-paniculata_contig17308:948..4307 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMammalia
Seed ortholog score78.2
Seed ortholog evalue1.7e-11
Seed eggNOG ortholog9785.ENSLAFP00000018879
Preferred nameUSP1
KEGG koko:K11832
KEGG Pathwayko03460,map03460
Hectar predicted targeting categoryother localisation
GOsGO:0001501,GO:0003674,GO:0003824,GO:0004175,GO:0004197,GO:0004843,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006282,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006974,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019783,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0033554,GO:0035520,GO:0036211,GO:0036459,GO:0042769,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0048583,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051171,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0080135,GO:0101005,GO:0140096,GO:1901564,GO:2001020
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase 1
EggNOG OGs354RR@311790,38DYD@33154,3BAN8@33208,3D0YD@33213,3JFTE@40674,4844F@7711,493AG@7742,KOG1864@1,KOG1864@2759
Ec32 ortholog descriptionPeptidase C19, ubiquitin carboxyl-terminal hydrolase
Ec32 orthologEc-01_010630.1
EC3.4.19.12
COG Functional cat.O
Best tax levelAfrotheria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400,ko04121
Exons3
Model size2939
Cds size2136
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17308.4068.1prot_H-paniculata_contig17308.4068.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17308 1765..4307 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929364.4614282-UTR-H-paniculata_contig17308:947..11661622929364.4614282-UTR-H-paniculata_contig17308:947..1166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17308 948..1166 +
1691480831.5283022-UTR-H-paniculata_contig17308:947..11661691480831.5283022-UTR-H-paniculata_contig17308:947..1166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17308 948..1166 +
1622929364.4746828-UTR-H-paniculata_contig17308:1182..17641622929364.4746828-UTR-H-paniculata_contig17308:1182..1764Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17308 1183..1764 +
1691480831.5420651-UTR-H-paniculata_contig17308:1182..17641691480831.5420651-UTR-H-paniculata_contig17308:1182..1764Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17308 1183..1764 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929364.4906235-CDS-H-paniculata_contig17308:1764..17751622929364.4906235-CDS-H-paniculata_contig17308:1764..1775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17308 1765..1775 +
1691480831.5569155-CDS-H-paniculata_contig17308:1764..17751691480831.5569155-CDS-H-paniculata_contig17308:1764..1775Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17308 1765..1775 +
1622929364.5122447-CDS-H-paniculata_contig17308:2182..43071622929364.5122447-CDS-H-paniculata_contig17308:2182..4307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17308 2183..4307 +
1691480831.5688508-CDS-H-paniculata_contig17308:2182..43071691480831.5688508-CDS-H-paniculata_contig17308:2182..4307Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17308 2183..4307 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17308.4068.1

>prot_H-paniculata_contig17308.4068.1 ID=prot_H-paniculata_contig17308.4068.1|Name=mRNA_H-paniculata_contig17308.4068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=712bp
MIHGHTRAFPTTRGDNKANAGAGSVPLRSSIYGSGLAQSDAGPSPLLNGG
NTPPKTTTIPCPQPPLLPPPFVGLKNLGNTCYVNAVVQALHACLRAVAKL
REATAGRDNAPVGREAESSSSPPSAYRVCNVEGQSERLARTDELFAVPSS
AYATNEAEESLVAEVSSPENSSRYDRKPVLDALSTLLAQMEESNVALALT
VSRSYHSEGDRSRVRPSSARARYATKNPETGVMTCDSKVSGCASGMGGKT
VEPAELDPLYACETPACSKPKTLGSSELCGEALTPTTVVELIRAGGLEEK
MGAFAELAGGLGGGTALPGFGGGQQCVSELLSKVLDADDVSGKGHVAGYD
SGLAADFRGALCIRMMCMECERHSVNHEPFKELMLPPLVQNEETAEDEGD
GQGCSSALPELRTIQDLLETILRSESLGGTNKVWCEACRQWTEAERRPSL
HHLPRLLSLHIRPAIVEGFVSSQPSQVIDSPPKGFGAGGFSCGPLKATWQ
GTGSDGRRALVERVLTVRAGATCQFHEPVTGRTTGDREALSKDTTYHHHS
LHMKSRERYSKEGLHEKPFTGMKHDRHNEDVRYDLVGIILHQGQTLDSGH
YTFALNATFDSARFTSATATRDGPAVDSVSCSPTARLKSTADSTQCSDKI
VTDASVGADDLQGRLSSGLRTERGAGMDKRPSVGEDHSPGFVLFDDERVR
WLSSEETDSVLQ
back to top

mRNA from alignment at H-paniculata_contig17308:948..4307+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17308.4068.1 ID=mRNA_H-paniculata_contig17308.4068.1|Name=mRNA_H-paniculata_contig17308.4068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3360bp|location=Sequence derived from alignment at H-paniculata_contig17308:948..4307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTGTTCGCTATATGGCTCATGAATATGGACGAGCAAGCCCTAGATCAGC
ATGAGAAGAAAAGGAAAAGATCTATCACCGGCTGTAGAAAGCTAGCACCT
GCGAAAATGACGCGAATGACAGATGGCTTGCCACAGCTGACAAGTAGGGC
GCCCTCCTTCTTGAAGAACAGAGAGAGAAAGAGGAAGTCGGAAACAACTA
CTGCTGGTGAGACGCCGAGGCCAGAAAGACTGCAGCACCGACAGGCACCG
ATAGGATCCCCACCTTCGGACTCAGCCGGAGATCCCACCATTGTGAAATG
TTTTTCTTCTCGTCGCTATGGCACCCGCTTGACGGCAGCAGCTAAACAAC
ACTTTGAATCCTCAAAACGTCACACTGCGCTCAAGCGTAACCTCAACAGC
ATATCCCAGGTGCACATACGACCACCAGCTCCTGTGTCAGCGCCAGCTCT
TGGCCTAGCTCAATCTCAAACTCAAGAAGGAAAGCGAAGGGCACCAAACA
GACCCGAACCAAATTGTAGTTTCATCTCCGCGGACGGACGGCGACAACGC
TCAACTCCCAATCTCACCTTTATAGATGCGAATAGAAAAGACCAGGATTC
TGCGGCTCTTGCCGTGGCACCATCGGTAACGGTCAAAAGGGATGTTGTTC
CGTCCAGTGGTGACGGTGGTTGCTTGGGGGATCATCGCAGATCGAAATCT
AGGCTAAGTCTCGGGCGACATCGCCGCGACGATGATAGAGCATCCAGAGG
CAGGGGTAAACTGGATTCGGTAACACTCGGGTATCCCTGGGGGGCGTCCT
TCCAGCAGCAACAGGGGATGATACATGGGTGAGAAAGTCTTGGAGGTTCT
GAGGATCTGAGTGCCTAAACTACACTAGCTATGCTAATGCTGATGCTGAG
CATGCAGAGAATATACAGTATATTATGTCCTCTTCTGTTGTGTGTATGGT
GGTTGTGGCCTTCCAAAGTGGCATTGTGTCGTACCGGATACATTCGAATT
ATTTAGCGGCCCTACATTCAGATTGAGTTGGCTGCGGTTGTCAATTTATC
ACGTCTTCAAACTATCGCCACGTGCTACAATATATTACTGGCTGGACTCA
GCTACGACAGCTCTCCATCACCCCTCTGGTAAACCCGCTGTGTTCAACTC
TCATAGTATAACTTGTTTTACTCCTCAAGATTCAATCGTCACATTCTAAT
CATACCCTCTGACCCCCACACTTTGCCGTATCTAGGCACACGCGTGCTTT
TCCTACGACAAGGGGGGATAATAAGGCGAACGCTGGCGCTGGATCTGTCC
CTCTGCGGTCGTCGATCTACGGCAGCGGACTCGCGCAGAGTGATGCGGGC
CCAAGCCCCTTGCTGAATGGCGGCAACACGCCACCTAAGACTACAACGAT
TCCATGCCCCCAGCCGCCTCTACTACCGCCGCCGTTTGTTGGACTGAAGA
ACTTAGGGAACACCTGCTATGTCAACGCCGTTGTGCAGGCATTGCATGCG
TGCCTCAGAGCAGTGGCGAAGCTGAGGGAGGCTACAGCCGGGCGGGACAA
TGCTCCGGTAGGCCGCGAGGCGGAGAGTAGTAGCAGCCCCCCCTCCGCAT
ACCGGGTCTGCAACGTGGAGGGACAATCGGAGCGTCTTGCACGGACAGAT
GAACTCTTCGCAGTGCCTAGCAGCGCCTATGCGACGAATGAAGCGGAAGA
GAGTCTGGTTGCGGAGGTGAGTTCACCAGAAAACAGCTCTAGATATGACA
GAAAGCCGGTGCTCGACGCGCTTTCCACTCTGTTGGCCCAAATGGAGGAG
AGCAACGTAGCTCTGGCGTTGACCGTCAGCAGGAGTTACCATAGCGAGGG
CGACAGATCTCGCGTTCGCCCATCGTCGGCGCGAGCGCGGTATGCAACGA
AAAATCCAGAGACAGGGGTTATGACGTGTGATTCGAAGGTCTCTGGTTGT
GCAAGTGGTATGGGAGGTAAGACGGTGGAACCTGCAGAGTTGGACCCACT
TTATGCATGCGAGACCCCTGCGTGCAGCAAACCGAAGACGCTGGGTAGTT
CGGAGCTCTGTGGGGAGGCATTGACACCGACAACAGTGGTAGAGCTGATT
CGTGCTGGGGGGTTGGAGGAGAAGATGGGTGCATTTGCTGAACTCGCTGG
AGGTCTAGGAGGCGGTACGGCGTTGCCAGGCTTTGGAGGAGGTCAACAGT
GTGTGTCCGAGCTCTTGAGCAAGGTCCTCGATGCTGATGATGTCAGTGGG
AAAGGCCACGTTGCCGGCTACGATTCGGGGTTAGCAGCGGATTTCCGAGG
CGCGCTCTGCATCCGCATGATGTGCATGGAATGCGAACGACATAGCGTGA
ACCATGAGCCATTTAAGGAGCTGATGTTGCCGCCGCTCGTCCAGAATGAG
GAAACAGCGGAGGACGAGGGAGACGGGCAGGGATGTTCCTCTGCCCTTCC
GGAGCTGCGAACGATTCAAGACCTCCTGGAGACCATTCTGAGAAGCGAGT
CGCTCGGCGGCACGAACAAGGTGTGGTGCGAGGCTTGTCGGCAGTGGACC
GAAGCTGAACGCCGGCCATCACTTCATCATCTTCCTCGATTGCTCTCTCT
CCACATTCGACCTGCGATCGTAGAGGGATTCGTGTCATCTCAACCCTCAC
AGGTGATTGACTCTCCGCCGAAAGGATTCGGCGCGGGCGGCTTCAGCTGC
GGCCCGCTAAAAGCAACGTGGCAAGGGACGGGGAGCGATGGTAGAAGAGC
TCTGGTTGAACGTGTATTAACTGTCAGGGCAGGCGCCACGTGCCAATTTC
ACGAACCTGTAACAGGGCGAACAACAGGTGACAGGGAGGCTTTGTCGAAG
GATACAACGTATCATCATCATAGTCTTCACATGAAATCGCGAGAACGATA
CTCTAAAGAAGGCCTCCATGAGAAGCCGTTCACGGGCATGAAACATGACC
GACATAACGAGGACGTGCGGTATGATCTCGTGGGCATTATTTTGCACCAG
GGTCAGACTCTCGACTCTGGGCACTACACATTCGCTCTTAATGCGACGTT
CGATTCGGCGCGTTTCACGAGCGCCACTGCCACCCGTGACGGACCAGCGG
TGGACTCTGTTTCCTGTTCACCGACAGCTCGATTGAAAAGTACAGCGGAT
TCTACACAGTGCTCCGACAAGATAGTAACTGATGCTTCGGTAGGAGCGGA
CGATTTACAAGGTAGGTTGTCGTCGGGGCTCCGAACAGAGCGGGGGGCGG
GCATGGACAAACGACCTTCAGTCGGAGAAGACCACTCGCCTGGATTTGTG
TTGTTCGACGACGAGCGCGTTCGCTGGTTATCATCGGAAGAGACAGACTC
CGTCTTGCAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17308:948..4307+

>mRNA_H-paniculata_contig17308.4068.1 ID=mRNA_H-paniculata_contig17308.4068.1|Name=mRNA_H-paniculata_contig17308.4068.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4272bp|location=Sequence derived from alignment at H-paniculata_contig17308:948..4307+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATACATGGATGATACATGGGCACACGCGTGCTTTTCCTACGACAAGG
GGGGATAATAAGGCGAACGCTGGCGCTGGATCTGTCCCTCTGCGGTCGTC
GATCTACGGCAGCGGACTCGCGCAGAGTGATGCGGGCCCAAGCCCCTTGC
TGAATGGCGGCAACACGCCACCTAAGACTACAACGATTCCATGCCCCCAG
CCGCCTCTACTACCGCCGCCGTTTGTTGGACTGAAGAACTTAGGGAACAC
CTGCTATGTCAACGCCGTTGTGCAGGCATTGCATGCGTGCCTCAGAGCAG
TGGCGAAGCTGAGGGAGGCTACAGCCGGGCGGGACAATGCTCCGGTAGGC
CGCGAGGCGGAGAGTAGTAGCAGCCCCCCCTCCGCATACCGGGTCTGCAA
CGTGGAGGGACAATCGGAGCGTCTTGCACGGACAGATGAACTCTTCGCAG
TGCCTAGCAGCGCCTATGCGACGAATGAAGCGGAAGAGAGTCTGGTTGCG
GAGGTGAGTTCACCAGAAAACAGCTCTAGATATGACAGAAAGCCGGTGCT
CGACGCGCTTTCCACTCTGTTGGCCCAAATGGAGGAGAGCAACGTAGCTC
TGGCGTTGACCGTCAGCAGGAGTTACCATAGCGAGGGCGACAGATCTCGC
GTTCGCCCATCGTCGGCGCGAGCGCGGTATGCAACGAAAAATCCAGAGAC
AGGGGTTATGACGTGTGATTCGAAGGTCTCTGGTTGTGCAAGTGGTATGG
GAGGTAAGACGGTGGAACCTGCAGAGTTGGACCCACTTTATGCATGCGAG
ACCCCTGCGTGCAGCAAACCGAAGACGCTGGGTAGTTCGGAGCTCTGTGG
GGAGGCATTGACACCGACAACAGTGGTAGAGCTGATTCGTGCTGGGGGGT
TGGAGGAGAAGATGGGTGCATTTGCTGAACTCGCTGGAGGTCTAGGAGGC
GGTACGGCGTTGCCAGGCTTTGGAGGAGGTCAACAGTGTGTGTCCGAGCT
CTTGAGCAAGGTCCTCGATGCTGATGATGTCAGTGGGAAAGGCCACGTTG
CCGGCTACGATTCGGGGTTAGCAGCGGATTTCCGAGGCGCGCTCTGCATC
CGCATGATGTGCATGGAATGCGAACGACATAGCGTGAACCATGAGCCATT
TAAGGAGCTGATGTTGCCGCCGCTCGTCCAGAATGAGGAAACAGCGGAGG
ACGAGGGAGACGGGCAGGGATGTTCCTCTGCCCTTCCGGAGCTGCGAACG
ATTCAAGACCTCCTGGAGACCATTCTGAGAAGCGAGTCGCTCGGCGGCAC
GAACAAGGTGTGGTGCGAGGCTTGTCGGCAGTGGACCGAAGCTGAACGCC
GGCCATCACTTCATCATCTTCCTCGATTGCTCTCTCTCCACATTCGACCT
GCGATCGTAGAGGGATTCGTGTCATCTCAACCCTCACAGGTGATTGACTC
TCCGCCGAAAGGATTCGGCGCGGGCGGCTTCAGCTGCGGCCCGCTAAAAG
CAACGTGGCAAGGGACGGGGAGCGATGGTAGAAGAGCTCTGGTTGAACGT
GTATTAACTGTCAGGGCAGGCGCCACGTGCCAATTTCACGAACCTGTAAC
AGGGCGAACAACAGGTGACAGGGAGGCTTTGTCGAAGGATACAACGTATC
ATCATCATAGTCTTCACATGAAATCGCGAGAACGATACTCTAAAGAAGGC
CTCCATGAGAAGCCGTTCACGGGCATGAAACATGACCGACATAACGAGGA
CGTGCGGTATGATCTCGTGGGCATTATTTTGCACCAGGGTCAGACTCTCG
ACTCTGGGCACTACACATTCGCTCTTAATGCGACGTTCGATTCGGCGCGT
TTCACGAGCGCCACTGCCACCCGTGACGGACCAGCGGTGGACTCTGTTTC
CTGTTCACCGACAGCTCGATTGAAAAGTACAGCGGATTCTACACAGTGCT
CCGACAAGATAGTAACTGATGCTTCGGTAGGAGCGGACGATTTACAAGGT
AGGTTGTCGTCGGGGCTCCGAACAGAGCGGGGGGCGGGCATGGACAAACG
ACCTTCAGTCGGAGAAGACCACTCGCCTGGATTTGTGTTGTTCGACGACG
AGCGCGTTCGCTGGTTATCATCGGAAGAGACAGACTCCGTCTTGCAAGCA
CACGCGTGCTTTTCCTACGACAAGGGGGGATAATAAGGCGAACGCTGGCG
CTGGATCTGTCCCTCTGCGGTCGTCGATCTACGGCAGCGGACTCGCGCAG
AGTGATGCGGGCCCAAGCCCCTTGCTGAATGGCGGCAACACGCCACCTAA
GACTACAACGATTCCATGCCCCCAGCCGCCTCTACTACCGCCGCCGTTTG
TTGGACTGAAGAACTTAGGGAACACCTGCTATGTCAACGCCGTTGTGCAG
GCATTGCATGCGTGCCTCAGAGCAGTGGCGAAGCTGAGGGAGGCTACAGC
CGGGCGGGACAATGCTCCGGTAGGCCGCGAGGCGGAGAGTAGTAGCAGCC
CCCCCTCCGCATACCGGGTCTGCAACGTGGAGGGACAATCGGAGCGTCTT
GCACGGACAGATGAACTCTTCGCAGTGCCTAGCAGCGCCTATGCGACGAA
TGAAGCGGAAGAGAGTCTGGTTGCGGAGGTGAGTTCACCAGAAAACAGCT
CTAGATATGACAGAAAGCCGGTGCTCGACGCGCTTTCCACTCTGTTGGCC
CAAATGGAGGAGAGCAACGTAGCTCTGGCGTTGACCGTCAGCAGGAGTTA
CCATAGCGAGGGCGACAGATCTCGCGTTCGCCCATCGTCGGCGCGAGCGC
GGTATGCAACGAAAAATCCAGAGACAGGGGTTATGACGTGTGATTCGAAG
GTCTCTGGTTGTGCAAGTGGTATGGGAGGTAAGACGGTGGAACCTGCAGA
GTTGGACCCACTTTATGCATGCGAGACCCCTGCGTGCAGCAAACCGAAGA
CGCTGGGTAGTTCGGAGCTCTGTGGGGAGGCATTGACACCGACAACAGTG
GTAGAGCTGATTCGTGCTGGGGGGTTGGAGGAGAAGATGGGTGCATTTGC
TGAACTCGCTGGAGGTCTAGGAGGCGGTACGGCGTTGCCAGGCTTTGGAG
GAGGTCAACAGTGTGTGTCCGAGCTCTTGAGCAAGGTCCTCGATGCTGAT
GATGTCAGTGGGAAAGGCCACGTTGCCGGCTACGATTCGGGGTTAGCAGC
GGATTTCCGAGGCGCGCTCTGCATCCGCATGATGTGCATGGAATGCGAAC
GACATAGCGTGAACCATGAGCCATTTAAGGAGCTGATGTTGCCGCCGCTC
GTCCAGAATGAGGAAACAGCGGAGGACGAGGGAGACGGGCAGGGATGTTC
CTCTGCCCTTCCGGAGCTGCGAACGATTCAAGACCTCCTGGAGACCATTC
TGAGAAGCGAGTCGCTCGGCGGCACGAACAAGGTGTGGTGCGAGGCTTGT
CGGCAGTGGACCGAAGCTGAACGCCGGCCATCACTTCATCATCTTCCTCG
ATTGCTCTCTCTCCACATTCGACCTGCGATCGTAGAGGGATTCGTGTCAT
CTCAACCCTCACAGGTGATTGACTCTCCGCCGAAAGGATTCGGCGCGGGC
GGCTTCAGCTGCGGCCCGCTAAAAGCAACGTGGCAAGGGACGGGGAGCGA
TGGTAGAAGAGCTCTGGTTGAACGTGTATTAACTGTCAGGGCAGGCGCCA
CGTGCCAATTTCACGAACCTGTAACAGGGCGAACAACAGGTGACAGGGAG
GCTTTGTCGAAGGATACAACGTATCATCATCATAGTCTTCACATGAAATC
GCGAGAACGATACTCTAAAGAAGGCCTCCATGAGAAGCCGTTCACGGGCA
TGAAACATGACCGACATAACGAGGACGTGCGGTATGATCTCGTGGGCATT
ATTTTGCACCAGGGTCAGACTCTCGACTCTGGGCACTACACATTCGCTCT
TAATGCGACGTTCGATTCGGCGCGTTTCACGAGCGCCACTGCCACCCGTG
ACGGACCAGCGGTGGACTCTGTTTCCTGTTCACCGACAGCTCGATTGAAA
AGTACAGCGGATTCTACACAGTGCTCCGACAAGATAGTAACTGATGCTTC
GGTAGGAGCGGACGATTTACAAGGTAGGTTGTCGTCGGGGCTCCGAACAG
AGCGGGGGGCGGGCATGGACAAACGACCTTCAGTCGGAGAAGACCACTCG
CCTGGATTTGTGTTGTTCGACGACGAGCGCGTTCGCTGGTTATCATCGGA
AGAGACAGACTCCGTCTTGCAA
back to top