mRNA_H-paniculata_contig17302.4066.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17302.4066.1
Unique NamemRNA_H-paniculata_contig17302.4066.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: A0A6H5KRL4_9PHAE (Amino_oxidase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRL4_9PHAE)

HSP 1 Score: 248 bits (634), Expect = 7.230e-77
Identity = 140/215 (65.12%), Postives = 161/215 (74.88%), Query Frame = 1 
Query:    1 AIFEALAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADED-QPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLGGKV-LEGGAQPSKGRASTCLYFALDGPAPV 639
            AI +AL APVG+LVDKI+VGLHRIAI F+ ++EIF A E TT DFL   L LSS +V+RFFAPFYQGIFLSPLEEQSS +F FVFKMFSVGSASLPEGGMGEVP QIAADLP+GC+ LNT V ++         D  G   A +      D  PRVRL+L  G E+LAH AVVATEAP A +LLG +  L GGA PS GR+STCLY+A+DGPAPV
Sbjct:  110 AIVDALVAPVGTLVDKIRVGLHRIAIVFQKDEEIFGAPEETTYDFLTDTLGLSSSMVSRFFAPFYQGIFLSPLEEQSSLLFNFVFKMFSVGSASLPEGGMGEVPKQIAADLPDGCLLLNTKVVSLDKIEEDDYDDDEGEGDALLPYSGSFDGSPRVRLTLEDGSELLAHAAVVATEAPVAAELLGEEAALGGGASPSTGRSSTCLYYAIDGPAPV 324
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: A0A836C819_9STRA (Amine oxidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C819_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.270e-53
Identity = 113/215 (52.56%), Postives = 139/215 (64.65%), Query Frame = 1 
Query:    4 IFEALAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADEDQPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLG--GKVLEGGAQPSK-GRASTCLYFALDGPAPV 639
            IF  L APVG+  DK++VGL+R+ +  +  + IF A ET TLDFL   L LS  I+ RFF PFY+GIFL+PLEEQSSRMF FVF+MF+ G+ASLP  GMG +P Q+AA LPEG + LNTAV T             G         A E  PR +L+L GGG+V A  AV+ATEAP A  LL   G+ L+G  +P   GR+STCLYFA+ G APV
Sbjct:  126 IFRCLCAPVGTFWDKVRVGLYRVTLPQRPLERIFGAAETDTLDFLTSQLGLSKGIIERFFEPFYRGIFLAPLEEQSSRMFTFVFQMFAKGAASLPAKGMGAIPAQLAAALPEGAIRLNTAV-TXXXXXXXXXXXXGG---------AGEAPPRAKLALKGGGKVSAFAAVLATEAPQAFALLAKAGRPLDGYQKPPPPGRSSTCLYFAVPGAAPV 330
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: A0A7S3UUR5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UUR5_HETAK)

HSP 1 Score: 155 bits (391), Expect = 1.510e-41
Identity = 88/211 (41.71%), Postives = 128/211 (60.66%), Query Frame = 1 
Query:   10 EALAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADEDQPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLGGKVLEGGAQPSKGRASTCLYFALDGPAPVR 642
            +AL AP+G L DK++VG+ R  I F+S+++IF+A E  TL +L+     S  ++ +FF PFY+GI+L+PL++QSSRMF+FVFKMF+ GSASLP GG+G+V   +A DLPEG + LN  V ++          ++G                  L+LA G +V+    VVA +   A KLL  ++        + RASTCLY+A+DG AP +
Sbjct:   82 DALLAPIGDLFDKVRVGIMRTTIIFRSDEDIFKAEEMDTLSYLKNKWGFSDEMITKFFRPFYEGIYLAPLDKQSSRMFDFVFKMFAQGSASLPAGGLGQVGRVLAEDLPEGALALNAEVRSV----------AKGG-----------------LTLASGQKVICDAVVVAADPIVARKLLNEQI-----DIPEARASTCLYYAIDGEAPQK 260
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: A0A7R9YFN5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFN5_9STRA)

HSP 1 Score: 146 bits (369), Expect = 1.200e-37
Identity = 89/214 (41.59%), Postives = 119/214 (55.61%), Query Frame = 1 
Query:   16 LAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADEDQPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLGGKVLEGGAQPS-----KGRASTCLYFALDGPAPVR 642
            L+AP+GSL+DK+ V    + +  ++  EI +  E  T ++LR+    S L+V  FF PF  GIFL+PL  QSSRMFEFVFKMF+ G+A+LP  G+G VP Q+A+ LPEG V LNT V  I       DR  RG                  ++L  G  +   + V+AT+APA   LL G  + G           GR+STCLY+  DGP P+R
Sbjct:  191 LSAPIGSLIDKLLVAYLSLRLQVETVGEILQKDEVDTEEYLRKIRGFSPLMVEAFFRPFLSGIFLAPLSLQSSRMFEFVFKMFAEGAATLPRDGIGAVPQQLASKLPEGTVVLNTPVSAI-------DRSGRG------------------VALVNGTVLACDSLVIATDAPACASLLKGANVMGDEDDGVFLNEDGRSSTCLYYTFDGPPPIR 379
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: W7U0L2_9STRA (Amine oxidase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0L2_9STRA)

HSP 1 Score: 147 bits (371), Expect = 3.630e-37
Identity = 90/213 (42.25%), Postives = 121/213 (56.81%), Query Frame = 1 
Query:    4 IFEALAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADEDQPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLGGKVLEGGAQPSKGRASTCLYFALDGPAPVR 642
            + + L APVGSL DK+KVGL R+       + IF++ ET TL  L +   LS  I+ RFF PFYQGI+L+PL EQSSRMF+FVF+MF+ G  SLP  G+  VP Q+AA LP+G + L  A   ++  RG                          + L+ G  + A   +VATE   A KLL  +++    +P  GR STCLY+A+ GPAP+R
Sbjct:  215 LIKGLLAPVGSLGDKVKVGLLRVQATLTPLRAIFDSAETDTLTHLSKTKGLSPAIIERFFTPFYQGIYLAPLAEQSSRMFDFVFRMFAEGGISLPARGIRAVPEQLAATLPKGSLQLGVAA--VRVGRGF-------------------------VELSDGRVLGAEALIVATEEGTARKLLKKELVRERPKPLGGRGSTCLYYAVPGPAPIR 400
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: A0A0G4EKB7_VITBC (Amine oxidase n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EKB7_VITBC)

HSP 1 Score: 137 bits (346), Expect = 9.510e-35
Identity = 86/220 (39.09%), Postives = 128/220 (58.18%), Query Frame = 1 
Query:    4 IFEALAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADEDQPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLGGKVLEGGAQPSK-------GRASTCLYFALDGPAPVR 642
            +  +L +P+G+  DK+KVGL+R++    +E++IF   E  T+DFLR +L LS  +++ FF PFY+GIFL+PL+ QSSRMFE++F +F+ G ASLPEGGMGE+  Q+A+ + +  + L+T V  +              ERA  GT          ++LAGG  V   + V+AT+APA +KLL G  +   A           G  S   Y+ LD  AP++
Sbjct:  110 LLASLLSPIGTFADKLKVGLYRLSCVRSTEEDIFSRPERPTVDFLRNELKLSDSMISSFFLPFYRGIFLAPLDRQSSRMFEWLFSLFARGPASLPEGGMGELARQLASGVKD--LRLSTEVLRV--------------ERARDGTYV--------VALAGGETVKCRSVVLATDAPATLKLLSGVGVTANALSGSLADLFKPGLESWTFYWGLDQEAPIK 305
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: A0A7R9YHJ8_DIALT (Hypothetical protein (Fragment) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9YHJ8_DIALT)

HSP 1 Score: 133 bits (334), Expect = 5.870e-33
Identity = 89/208 (42.79%), Postives = 119/208 (57.21%), Query Frame = 1 
Query:   22 APVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSR-GSERADVGTDADEDQPRVRLSLAGGGEVLAHTAVV-ATEAPAAVKLLGGKVLEGGAQPSKGRASTCLYFALDGPAPV 639
            APVGSLVDK +V L  +    +    IF     +TL FLR +L +S +++ RFF PFYQGIFL+PL+EQ +RMFEFVFKMF++G A+LP  G+GEVP Q+A  LPE  V   T V    G   +S R +  G+E+A+   + D+               L   AVV A + PA   + G     G A     R+ST +YFA+DGP P+
Sbjct:  138 APVGSLVDKARVALFAVLQFLQPVDAIFAKPPRSTLAFLRAELAVSDVMIERFFRPFYQGIFLAPLDEQDARMFEFVFKMFTLGVAALPAKGLGEVPKQLARALPEDTVRTRTLV---LGVSATSVRVAEVGAEKAEGAREPDD-------------HTLESDAVVLAVDRPALAAIDGA---HGAAGTDGERSSTAIYFAIDGPPPI 326
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: A0A1V0DEE8_9BACT (Oxidoreductase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DEE8_9BACT)

HSP 1 Score: 128 bits (321), Expect = 2.160e-31
Identity = 83/205 (40.49%), Postives = 112/205 (54.63%), Query Frame = 1 
Query:   16 LAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADEDQPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLGGKVLEGGAQPSKGRASTCLYFALDGP 630
            L APVG+L DK++V   R A+   S  ++F+  ETTTLD LRR    S  +++RFF PF+ GIF       SSRMFEFVF+MF+ G A+LP GGM  +P Q+AA LP   + LNT V  ++  R                           ++L  G  + A   VVATEAPAA  LLG +      +P+  R++TCLYF+ + P
Sbjct:  109 LLAPVGTLEDKLRVARLRAALLRGSLTDLFDREETTTLDALRRRWGFSDRMIDRFFRPFFGGIFFDRDLTASSRMFEFVFRMFAEGRAALPAGGMEAIPRQLAAPLPPEAIRLNTRVRHVEPGR---------------------------VTLDDGTTLEAPAVVVATEAPAAAALLGERAA---IRPTAYRSTTCLYFSAETP 283
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: A0A7S0DBH4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DBH4_9EUKA)

HSP 1 Score: 124 bits (311), Expect = 1.930e-29
Identity = 80/208 (38.46%), Postives = 114/208 (54.81%), Query Frame = 1 
Query:   13 ALAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADEDQPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLGGKVLEGGAQPSKGRASTCLYFALDGPAP 636
            ALAAPVG++ DK+K+G++R+     S K + E RE +T D+LR D  LS  I+ +FF PFY+GIFLS LE+QSS MF FVFKM + GSA LP+ G+G+V   +A  L +  + LNT V  ++                          P + ++L  G ++     +VAT+   A +LL G  L  G    + R S C Y+ +DG  P
Sbjct:  208 ALAAPVGNIFDKLKIGIYRLYANLASLKTLNEGREKSTYDYLRDDQGLSEDIIEKFFRPFYRGIFLSELEDQSSYMFNFVFKMLADGSAMLPQEGIGKVSDMLAESLKDD-IRLNTRVAKVE--------------------------PGL-VTLESGEKLDTSYIIVATDGATASRLLEGNGL--GVSSPEDRRSACFYYQIDGKPP 385
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BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Match: UPI001C4F1CFA (15-cis-phytoene desaturase, chloroplastic/chromoplastic n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F1CFA)

HSP 1 Score: 121 bits (304), Expect = 1.190e-28
Identity = 82/215 (38.14%), Postives = 122/215 (56.74%), Query Frame = 1 
Query:   10 EALAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDLDLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGMGEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADEDQPRVRLSLAGGGEVLAHT--AVVATEAPAAVKLLGGKVLEG--GAQPSKGRASTCLYFALDGPAPVR 642
            ++LA P+G+++DK+ +GL RI +  +SE+EIF A E   +D L++    S  I++RFF PF+ GIF     E +SR+F+F+FK  ++G+ +LP  G+  +P QIAA LP G + LN+ V TI   R  S                    P V+L     GE+L      +VA E P A KLL GK+     G++P+  R++ CLYF+ +  APVR
Sbjct:  159 QSLANPIGTVLDKLLIGLKRIQVLGRSEEEIFSADEVPIIDLLKKT-GFSDSIIDRFFRPFFGGIFFDTELETTSRLFDFIFKCLALGNNTLPARGIAAIPEQIAAKLPPGSISLNSRVVTIDFNRSESK------------------PPTVKLQ---SGEILRSELGVIVAVEEPEANKLLAGKLTVELTGSRPA--RSTVCLYFSAE-QAPVR 348
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17302.4066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRL4_9PHAE7.230e-7765.12Amino_oxidase domain-containing protein n=2 Tax=Ec... [more]
A0A836C819_9STRA1.270e-5352.56Amine oxidase n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A7S3UUR5_HETAK1.510e-4141.71Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9YFN5_9STRA1.200e-3741.59Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7U0L2_9STRA3.630e-3742.25Amine oxidase n=2 Tax=Monodopsidaceae TaxID=425072... [more]
A0A0G4EKB7_VITBC9.510e-3539.09Amine oxidase n=1 Tax=Vitrella brassicaformis (str... [more]
A0A7R9YHJ8_DIALT5.870e-3342.79Hypothetical protein (Fragment) n=2 Tax=Diacronema... [more]
A0A1V0DEE8_9BACT2.160e-3140.49Oxidoreductase n=2 Tax=Bacteroidetes TaxID=976 Rep... [more]
A0A7S0DBH4_9EUKA1.930e-2938.46Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
UPI001C4F1CFA1.190e-2838.1415-cis-phytoene desaturase, chloroplastic/chromopl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17302contigH-paniculata_contig17302:180..5039 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.6
Seed ortholog evalue4.2e-65
Seed eggNOG ortholog2880.D7FN60
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Flavin containing amine oxidoreductase
EggNOG OGs2QSIC@2759,COG1233@1
Ec32 ortholog descriptionAmine oxidase
Ec32 orthologEc-06_008520.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size657
Cds size657
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17302.4066.1prot_H-paniculata_contig17302.4066.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17302 180..5039 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929363.970347-CDS-H-paniculata_contig17302:179..4101622929363.970347-CDS-H-paniculata_contig17302:179..410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 180..410 -
1691480831.404705-CDS-H-paniculata_contig17302:179..4101691480831.404705-CDS-H-paniculata_contig17302:179..410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 180..410 -
1622929363.982656-CDS-H-paniculata_contig17302:461..5471622929363.982656-CDS-H-paniculata_contig17302:461..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 462..547 -
1691480831.4237468-CDS-H-paniculata_contig17302:461..5471691480831.4237468-CDS-H-paniculata_contig17302:461..547Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 462..547 -
1622929363.995823-CDS-H-paniculata_contig17302:808..9501622929363.995823-CDS-H-paniculata_contig17302:808..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 809..950 -
1691480831.4324203-CDS-H-paniculata_contig17302:808..9501691480831.4324203-CDS-H-paniculata_contig17302:808..950Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 809..950 -
1622929364.006972-CDS-H-paniculata_contig17302:3377..34791622929364.006972-CDS-H-paniculata_contig17302:3377..3479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 3378..3479 -
1691480831.4408941-CDS-H-paniculata_contig17302:3377..34791691480831.4408941-CDS-H-paniculata_contig17302:3377..3479Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 3378..3479 -
1622929364.0169387-CDS-H-paniculata_contig17302:4943..50391622929364.0169387-CDS-H-paniculata_contig17302:4943..5039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 4944..5039 -
1691480831.4533129-CDS-H-paniculata_contig17302:4943..50391691480831.4533129-CDS-H-paniculata_contig17302:4943..5039Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17302 4944..5039 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17302.4066.1

>prot_H-paniculata_contig17302.4066.1 ID=prot_H-paniculata_contig17302.4066.1|Name=mRNA_H-paniculata_contig17302.4066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=219bp
AIFEALAAPVGSLVDKIKVGLHRIAIGFKSEKEIFEARETTTLDFLRRDL
DLSSLIVNRFFAPFYQGIFLSPLEEQSSRMFEFVFKMFSVGSASLPEGGM
GEVPLQIAADLPEGCVYLNTAVDTIQGTRGSSDRDSRGSERADVGTDADE
DQPRVRLSLAGGGEVLAHTAVVATEAPAAVKLLGGKVLEGGAQPSKGRAS
TCLYFALDGPAPVRRVFF*
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mRNA from alignment at H-paniculata_contig17302:180..5039-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17302.4066.1 ID=mRNA_H-paniculata_contig17302.4066.1|Name=mRNA_H-paniculata_contig17302.4066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4860bp|location=Sequence derived from alignment at H-paniculata_contig17302:180..5039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTATTTTCGAGGCGCTGGCGGCCCCAGTAGGCAGTCTAGTCGATAAGAT
CAAAGTTGGACTGCATCGGATAGCTATCGGCTTCAAGAGTGAAAAGGTAT
GTGTCTAGAGCTATGCGTGTATGCATGTATAGCACGTCATTTTTGGTTGT
CGTTGTGGTGGTGGTCGTGATGCTCTTGCTGATACTGTTTTCATCGATAC
CAAACAATGTTGGATAGTTTCGTGCCTAAACAGGTCACTTCGCTTTTCCC
CTCTAGCACACGATTGACGGTTACTACGGGGGAAAATAATAATCAGGAGC
ATTTTTATTTTTATTTTCGGAAACTGATTTTTTTTTCCCCCCCCCCCCGT
TGGTCTACAGATTTTCGCTTCTAGCTGAAAACATAAACACACTCTAAAAC
CACTTGCACAGGCATGCAGCAACCGATTGGTGCATATCGTATTGCATGAG
TTACACCTCAAATGTCAATTTTCTAATTTGCTCCTGATTATTATGTTCCT
CCATAATAGTACGATATGCTCTGCAGCAGTTGGCTACCATAACTGGTGCC
TTGTTGACACACTTCCACTGCGAGGCCTCCCCCATTTCACCCCTTTCCAC
CTCTCCCCTCTCCCCGCCTCCCCCTGCCTTCAGCTGCGTGAACCTACCGC
GATGTAGTTGCGGATTTCCTACTTTGAAATAATTTACTGTCTGACGCCTT
TTCTTTGGAGAGGGAAATTATCGTAGAAAACCGGGTCTGTGTGTGGTCGT
GTATGGGGTATTTATTTGTCACCTCGGTGTGATGCGCTCTTTTCAAAGTG
AAACTTACCGAAACCTACCCATTGGCTCCACGGGAGACCCATCTGATATT
TCTCGACCGAAATTTGACTGGTGATGATGTCATAATCCATTTTTTTTCTT
TTTTACATGTGCATATCCATGGTTGAAATTGTTTATTTTTTCTTCTTCTT
GTCCATCACTATATTGTATATATATATATATATATATATTGTTGATAGGT
GGTTTCCCCTATCTATCTACGGCCTCGGGTTTCTTGGTCTTTTCCTGACG
CCGCCCGAAGCTTCGATGAGTGGTGTCGGTTTCTTTTGGGAGATTTTGGC
AGGGAGAGATCGAAGGAGATCTATGGTAGACTTGTTGTGACCCTGGTGTG
CAAGGAGATTCTTCATGCACTCTTCAGGGTGTCCAGAGGGGACCGTGAAG
ATTCAACGAGCTTTGCGACATGGACTTGAGATTCTCCTCCCCACGTTCTA
AATGATCAAAACATATGCGTATCTTCATGTTGTGAATGTATGGCGTTAGA
TCTACGATGGTACAGAAATATGGTCTTGACGTTCTTCACGTATTTCGATT
GCTCCTATACTCGTATAACAAGGATTTCACCCCAAGGAGGTGGTGGTAGG
TGACGTATTGAGTGTTTATTTAGGCCGTCGGTTACTAACTAAACCTGTTT
TGTTGCTGTGGTTTGCACATCTTAAACTAATAAACAAGCAAAAAATCCTT
CTCGACGTCCCATTCTTCTCGTCCTCGTTCCAAACACTTTTGTGTTGGCT
TTGCTCTCAGGAGATATTCGAAGCCCGTGAAACGACCACGCTCGATTTTC
TCAGGCGCGATTTGGACTTGAGCAGCCTCATTGTCAATCGCTTCTTCGCG
CCCTTTTATCAGGTACTCCTTCTTTTTTTTTTTTTCTTGTGGTGATATAT
TTCGTATTTTTCCCTATAGGATAAACAGGCAAGTAAGGACGGTGTCACAC
TAACGCGGGAAATGGGCAAGATATGTATATATACATATATATTTCTTACT
GTGGATGATGGCGGAGAGAGAGAGAGGGATATGGTAACACCTTCGATATC
GCACACTCTCATACTATTTTCAAACTCGGTTTTCTCGACAAGGATGGTGC
ACATGACACCGATAGCGATATCGTTGGGAAGATCTCGTTGAGATCTTTTC
GTAGGTCTGCCGTTTCGGCACGTGCGTGTTCGTGTTTGTCGAAGAAAATT
GGGTTTGAAAAATAATATCGAGGAGTGCGATATCAAAGGGTGTTACGTTA
TGTGTGGGGATGATGACGATGCTTGACACTGGTCACGAGTTAACATACCA
TCATAAATACGAAAATACCTATATATATATACAAGAGTTGAGGATCTCTA
ACTTTTCATACACCAATTCAAATGTGGAACGAAAATGTTTATTGATGATA
CATTCACAACACATAAAGTGAGAGCCGATTAACTTTGAATGATCGCATAT
GATTATAGATAAAGGGATGTGTTGTGGTAGCAAAGTTTGGGTAGGGTAGC
GTTCATCCTTCACAATTGGTTGAACCATTTAGGAAAAGCTTTCCATCTGT
AGATAGGCATATGCCTAGGACGAGATGTGCCCAATGATCAAGTAGGATCG
AGTAGGTATTTTGGAAGTTGGGCCTAAAAACCATTCTTGAGTCCCAAACT
CGGCATTTTTCACAGGCACACACTCGAAATAAGTTTACCAGTATATATGA
AAAAAGAAAAAAAAAAATGAGAGACCACATATTAAAAAGAAACATATGGA
AGAGTTTGGGGAGAACAAATGTGGAGGGGGTTGGGAGGAAGGGCCGAAGC
AGGTGGCGGGACGGACGGGCGGTGTGTGCAAGGCCCAGTGACATATTCAC
CGCGGCATCCTGATACGCGATTACTAGTGATTCCAACTTTATGCGGGCGA
TTTGCAGCCTACAATCCGAACTAAGAAAAGATTTAAAGATTGGCTCAAGT
TTGTATCCTTGCAAATTGTTGTACTTTCCATTGTAGCACGTGTGTAGCCC
AGTTCATAAGGGCCATGAAGACCTGACCTCATCCCCACCTTCCTCAAGCT
AATTTTTTTTTTTTGTTTTGCAAAATTTTTATAATTTTTTTTATAAAACC
TAAAAGCTTTTAGTAGTATATACTTAGTTTATAATTAAAAAGATCAAAAC
ATAAACTATACAGCGTTGCGCTCGTAATTAGAATTAACCAAACGGGCAGG
GGAGTGAGGGGCATGGTGGATTAAACATGATATGATTATGATATTATTAA
TAGAATTCACATGATAGAGGTAGAAGTCCATTTCGGTCGAAGACTAAAAA
TGTCTGAGAACAAAACGAAGTCCTACCATCAACGCAAGGAGGTAACACCC
GAAAAGTGTCCCTCGCTTTGTAAAACAACGTTGTAATAATATAATATTTA
GTACCCCCCCCCCCCGCCAATCCTCCTTTGTCCATGCCAAACCACACTTT
CAATCCAGGCGAGTCTTCACTATGTTTGTATTGGCGACTGGGGGTCAGAG
TAACCTTATCGTATCATAGTCCTCACGAGGCGGGGGAATAGTACGGCAGG
GTTTTCCGAAAACCATGGATAAGGCACATGGGTGACGTGCTGTATTGGAT
AGGGCAAGACTCAATCTTGTCCCTCCGTTCACGTAATGTCCCCGATTCAT
CCTGCTGGTGCTGGCCCCACCATTGTCCTAGGAGAGGAGCTTACAGTATT
CCTTCTGCGACGTTTGTTAGCTTGCAGTATTGCTCAAGGCAGACGTTTAA
GGTTTGAGGTCCCTCCAAATAAAAAAAATGGCGGCAAACGATCGGATCGG
ATGTCGGTCACAGCGCTGACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TTTACAGGTTCTCCGCGGTGCCCGTCTGAGAAAGGGCCAGATATATGATC
ACCTTGATTTATCTTTTGATATTCTGTTGGACCGTGTACATTTTTCGCGC
CGGGATTTTGATTTATGGCAATCAATCAATCAATCAATCAATCAATCAAT
CAATCAATCTTGAGTGATGGACCTGCGTTTCAACCACAAAAAAAAGAAGA
AAAGAAAGGGTGTGTACGGGTGTATGTATGAATGAGGGTGTGTATGCTCG
TGTGTCATGCCATAAACTGGTATGCAGTAAAGGAGCAAGAATGATGCAAA
AAAAGTAGTGCTCGACCATGGATACGTGCGCCCTCCCCTATAAATGGACA
CTACGATCAATACACTCTAACGACTAACGAGGATGGTGCTGTTGTTTGGC
TGCGATTTGCTCTACCTGGTGAACATCGACGACGGGCAGGGCATCTTTCT
GTCCCCGCTGGAGGAACAGTCCTCTCGAATGTTCGAGTTCGTGTTTAAGA
TGTTCTCCGTTGGCTCCGCTTCACTTCCCGAAGGCGGCATGGGGGAGGTG
CCGCTGCAGATTGCGGCCGATCTACCCGAAGGTGAACACTTAATTTCCGC
GTCAAAGCAGCTATAATTCAACCAACACGGGTGGCAAGTGGGTTGGCGTA
CCAACGAGGGTTCCGATGGGCGAAAGGGATTTAAAAAGAAACGTGTTTTT
GGGGTGTCCGTCATTCATGTGAAAGTTATTTCGTGTTCACGTACAGCAGT
ACACAGTTTCGAGTCCTCCCCTCCCCCCTCCAACCGCCCGCCCGTCCACC
CGCCCGCCCGCCCGCCTAACGAACAAACACAAACCAAAAAAGGGTGCGTA
TACCTGAACACGGCAGTAGATACGATACAAGGAACCCGAGGGAGCAGCGA
CAGGGACAGTCGCGGTAGCGAACGAGCAGTGGCCAACTCCGACGACGAAA
GCAAGTTCGTCGCCTATGGTGAGGGCAAGGACGTGGGAACAGATGCTGAT
GAGGATCAACCCCGCGTCAGGTTAAGTCTGGCGGGGGGTGGCGAGGTACT
CGCGCACACGGCTGTGGTGGCCACCGAGGCCCCTGCCGCGGTGAAGTTGC
TCGGGGGTAAGGTGCTGGAAGGGGGAGCGCAGCCGAGCAAGGGGAGAGCA
AGCACTTGCTTGTATTTTGCGCTGGACGGGCCTGCGCCGGTGAGAAGAGT
TTTTTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17302:180..5039-

>mRNA_H-paniculata_contig17302.4066.1 ID=mRNA_H-paniculata_contig17302.4066.1|Name=mRNA_H-paniculata_contig17302.4066.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1314bp|location=Sequence derived from alignment at H-paniculata_contig17302:180..5039- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTATTTTCGAGGCGCTGGCGGCCCCAGTAGGCAGTCTAGTCGATAAGAT
CAAAGTTGGACTGCATCGGATAGCTATCGGCTTCAAGAGTGAAAAGGCTA
TTTTCGAGGCGCTGGCGGCCCCAGTAGGCAGTCTAGTCGATAAGATCAAA
GTTGGACTGCATCGGATAGCTATCGGCTTCAAGAGTGAAAAGGAGATATT
CGAAGCCCGTGAAACGACCACGCTCGATTTTCTCAGGCGCGATTTGGACT
TGAGCAGCCTCATTGTCAATCGCTTCTTCGCGCCCTTTTATCAGGAGATA
TTCGAAGCCCGTGAAACGACCACGCTCGATTTTCTCAGGCGCGATTTGGA
CTTGAGCAGCCTCATTGTCAATCGCTTCTTCGCGCCCTTTTATCAGGGCA
TCTTTCTGTCCCCGCTGGAGGAACAGTCCTCTCGAATGTTCGAGTTCGTG
TTTAAGATGTTCTCCGTTGGCTCCGCTTCACTTCCCGAAGGCGGCATGGG
GGAGGTGCCGCTGCAGATTGCGGCCGATCTACCCGAAGGGCATCTTTCTG
TCCCCGCTGGAGGAACAGTCCTCTCGAATGTTCGAGTTCGTGTTTAAGAT
GTTCTCCGTTGGCTCCGCTTCACTTCCCGAAGGCGGCATGGGGGAGGTGC
CGCTGCAGATTGCGGCCGATCTACCCGAAGGGTGCGTATACCTGAACACG
GCAGTAGATACGATACAAGGAACCCGAGGGAGCAGCGACAGGGACAGTCG
CGGTAGCGAACGAGCAGGTGCGTATACCTGAACACGGCAGTAGATACGAT
ACAAGGAACCCGAGGGAGCAGCGACAGGGACAGTCGCGGTAGCGAACGAG
CAGACGTGGGAACAGATGCTGATGAGGATCAACCCCGCGTCAGGTTAAGT
CTGGCGGGGGGTGGCGAGGTACTCGCGCACACGGCTGTGGTGGCCACCGA
GGCCCCTGCCGCGGTGAAGTTGCTCGGGGGTAAGGTGCTGGAAGGGGGAG
CGCAGCCGAGCAAGGGGAGAGCAAGCACTTGCTTGTATTTTGCGCTGGAC
GGGCCTGCGCCGGTGAGAAGAGTTTTTTTTTAAGACGTGGGAACAGATGC
TGATGAGGATCAACCCCGCGTCAGGTTAAGTCTGGCGGGGGGTGGCGAGG
TACTCGCGCACACGGCTGTGGTGGCCACCGAGGCCCCTGCCGCGGTGAAG
TTGCTCGGGGGTAAGGTGCTGGAAGGGGGAGCGCAGCCGAGCAAGGGGAG
AGCAAGCACTTGCTTGTATTTTGCGCTGGACGGGCCTGCGCCGGTGAGAA
GAGTTTTTTTTTAA
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