mRNA_H-paniculata_contig17295.4060.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17295.4060.1
Unique NamemRNA_H-paniculata_contig17295.4060.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 3.700e-9
Identity = 30/49 (61.22%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    7 QVAKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAEDPGDDAT 153
            Q AKLLGD ++P+FYP LFA VA  L+ FGV VF RI  RAED G++A+
Sbjct:  430 QAAKLLGDVTVPSFYPALFASVAGLLEAFGVMVFERIRDRAEDVGEEAS 478
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BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Match: A0A6H5JSK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK9_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.770e-8
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:   13 AKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAEDPGDDAT 153
            AKLLGD ++P+FYP LFA VA  L+ FGV VF RI  RAED G++A+
Sbjct:   31 AKLLGDVTVPSFYPALFASVAGLLEAFGVMVFERIRDRAEDVGEEAS 77
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BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Match: A0A7S4USV2_9EUKA (Hypothetical protein n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4USV2_9EUKA)

HSP 1 Score: 48.9 bits (115), Expect = 4.430e-5
Identity = 24/42 (57.14%), Postives = 30/42 (71.43%), Query Frame = 1 
Query:    7 QVAKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAE 132
            Q+AKLLGD+S+PTFYP  F +V   L  FG  VF RI +RA+
Sbjct:  242 QMAKLLGDSSVPTFYPSKFVVVTEILDTFGKLVFERIRQRAK 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17295.4060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLV5_ECTSI3.700e-961.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JSK9_9PHAE1.770e-861.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4USV2_9EUKA4.430e-557.14Hypothetical protein n=1 Tax=Paramoeba aestuarina ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17295contigH-paniculata_contig17295:5164..5349 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.5e-07
Seed eggNOG ortholog2880.D8LLV5
Preferred nameC16orf62
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.protein transport
EggNOG OGsKOG3682@1,KOG3682@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size186
Cds size186
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929363.3194416-CDS-H-paniculata_contig17295:5163..53491622929363.3194416-CDS-H-paniculata_contig17295:5163..5349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 5164..5349 -
1691480831.080246-CDS-H-paniculata_contig17295:5163..53491691480831.080246-CDS-H-paniculata_contig17295:5163..5349Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 5164..5349 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17295.4060.1prot_H-paniculata_contig17295.4060.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17295 5164..5349 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17295.4060.1

>prot_H-paniculata_contig17295.4060.1 ID=prot_H-paniculata_contig17295.4060.1|Name=mRNA_H-paniculata_contig17295.4060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=62bp
MQQVAKLLGDTSMPTFYPRLFALVASSLQLFGVFVFGRILKRAEDPGDDA
TLGTTPSAGEG*
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mRNA from alignment at H-paniculata_contig17295:5164..5349-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17295.4060.1 ID=mRNA_H-paniculata_contig17295.4060.1|Name=mRNA_H-paniculata_contig17295.4060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at H-paniculata_contig17295:5164..5349- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACAGGTAGCCAAGCTCCTGGGTGACACCTCAATGCCCACCTTTTA
TCCAAGGCTGTTCGCGCTCGTGGCCTCCTCGCTGCAGCTCTTCGGCGTCT
TCGTGTTTGGGCGTATACTGAAAAGGGCCGAGGATCCTGGCGATGATGCT
ACCCTTGGAACCACACCGTCAGCGGGAGAAGGTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17295:5164..5349-

>mRNA_H-paniculata_contig17295.4060.1 ID=mRNA_H-paniculata_contig17295.4060.1|Name=mRNA_H-paniculata_contig17295.4060.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at H-paniculata_contig17295:5164..5349- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAACAGGTAGCCAAGCTCCTGGGTGACACCTCAATGCCCACCTTTTA
TCCAAGGCTGTTCGCGCTCGTGGCCTCCTCGCTGCAGCTCTTCGGCGTCT
TCGTGTTTGGGCGTATACTGAAAAGGGCCGAGGATCCTGGCGATGATGCT
ACCCTTGGAACCACACCGTCAGCGGGAGAAGGTTAGATGCAACAGGTAGC
CAAGCTCCTGGGTGACACCTCAATGCCCACCTTTTATCCAAGGCTGTTCG
CGCTCGTGGCCTCCTCGCTGCAGCTCTTCGGCGTCTTCGTGTTTGGGCGT
ATACTGAAAAGGGCCGAGGATCCTGGCGATGATGCTACCCTTGGAACCAC
ACCGTCAGCGGGAGAAGGTTAG
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