mRNA_H-paniculata_contig17295.4059.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17295.4059.1
Unique NamemRNA_H-paniculata_contig17295.4059.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: A0A6H5JSK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSK9_9PHAE)

HSP 1 Score: 268 bits (685), Expect = 6.950e-80
Identity = 128/185 (69.19%), Postives = 149/185 (80.54%), Query Frame = 1 
Query:    4 GSQVQTTLPTPPGSKTSGEPARHPLPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKIAPLETAHAASSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVAPGAPRVRGTLVLSYDR 558
            G++V       PG       ARH LP+GWTCD+V  +ARETCRNWFYKTACIRELLPRIL+EAALLPCYRFLA EDEFGQILGRLSTLVRGVG+PMVAVYCRCF+AAAG+ +AP E+AHA +SLQDYLFSLQEVQQGK+ GYLR    G++ Y+HLH+PA+ WLL +V PGAPR   T +L+  R
Sbjct:   82 GNKVDPPADPSPGGGAGAGGARHALPRGWTCDDVSAEARETCRNWFYKTACIRELLPRILIEAALLPCYRFLANEDEFGQILGRLSTLVRGVGNPMVAVYCRCFVAAAGAAVAPRESAHAVASLQDYLFSLQEVQQGKLEGYLRANQFGLSEYLHLHAPAIDWLLGVVGPGAPRGVFTSILANYR 266
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: D8LLV5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLV5_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 6.870e-79
Identity = 123/165 (74.55%), Postives = 144/165 (87.27%), Query Frame = 1 
Query:   64 ARHPLPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKIAPLETAHAASSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVAPGAPRVRGTLVLSYDR 558
            ARH LP+GWTCD+V  +ARETCRNWFYKTACIRELLPRIL+EAALLPCYRFLA EDEFGQILGRLSTLVRGVG PMVAVYCRCF+AAAG+++AP E+AHA +SLQDYLFSLQEVQQGK+ G+LR    G++ Y+HLH+PA+ WLL +V PGAPR   T +L++ R
Sbjct:  503 ARHALPRGWTCDDVSAEARETCRNWFYKTACIRELLPRILIEAALLPCYRFLANEDEFGQILGRLSTLVRGVGSPMVAVYCRCFVAAAGAEVAPRESAHAVASLQDYLFSLQEVQQGKLEGHLRANQFGLSEYLHLHAPAIDWLLGVVGPGAPRGVFTSILAHYR 667
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: A0A8K1CUG7_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CUG7_PYTOL)

HSP 1 Score: 154 bits (390), Expect = 4.890e-40
Identity = 80/170 (47.06%), Postives = 111/170 (65.29%), Query Frame = 1 
Query:   52 SGEPARHPLPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKIA-PLETAHAASSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVAPGAPRVRGTLVLSYDR 558
            +G+P   PL + +T DEV   A+ETCRNWFYK ACIRELLPRI +E ALL CYRFL  + EF QI+ RL+++++GVG+PMVA+Y R ++A A +++  P E A   +SL DY F+ Q+ Q  K+  YL    L    Y+ LHSPA+ WL+   A  +  +    +LS+ R
Sbjct:  340 NGQPLPTPLGESFTSDEVNIQAKETCRNWFYKIACIRELLPRIYIEIALLKCYRFLC-DGEFPQIVARLASMIKGVGEPMVALYTRLYLALASTELVNPGEKAAVLTSLYDYFFAFQQYQLNKLDQYLTSQQLTHEAYLALHSPAIEWLMKCAAHSSTEIVFEALLSHYR 508
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: F0Y850_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y850_AURAN)

HSP 1 Score: 147 bits (371), Expect = 1.210e-37
Identity = 79/170 (46.47%), Postives = 102/170 (60.00%), Query Frame = 1 
Query:   61 PARHPLPQGWTCDEVGPDARET----CRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKIAPLETAHAASSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVAPGAPRVRGTLVLSYDR 558
            P R  L   +   +V  DA+ET    CRNWFYKTACIRELLPR  VE ALL CY FL+ + EF  ILGRL ++ RGVGDP+V VY RC++A  G+ +AP    +A + L DYLF  +EV++   A  L   GL    Y+ L  PAV W+L  +  GA       V+++ R
Sbjct:   99 PGRRGLGAAFASRDVCADAKETRRTACRNWFYKTACIRELLPRFYVEVALLKCYEFLS-DGEFPAILGRLGSIARGVGDPLVGVYARCYLAKVGADVAPACKPYAVTMLHDYLFCFKEVRREPFASRLAALGLSDGQYIRLGEPAVEWVLRCIGRGASYEHFETVVAHYR 267
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: K3WSD6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSD6_GLOUD)

HSP 1 Score: 146 bits (368), Expect = 4.330e-37
Identity = 75/154 (48.70%), Postives = 101/154 (65.58%), Query Frame = 1 
Query:   52 SGEPARHPLPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKIAPLETAHAA-SSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVA 510
            +G+P   PL + +   +V   A+ETCRNWFYKTACIRELLPRI +E ALL CYRFL  + E+ QI+ RLS +++GVG+PMVA+Y R ++A +GS++ P     A  SSL DY FS  + Q  K+  +L    +    Y+ LHSPAV WL+   A
Sbjct:  279 NGQPLPTPLSENFVSSDVNIHAKETCRNWFYKTACIRELLPRIYIEIALLKCYRFLC-DGEYPQIVARLSNMIKGVGEPMVALYTRVYLALSGSELLPPSDKTAVLSSLFDYFFSYNQFQATKLEKWLETNNMTQEEYLGLHSPAVEWLMKCAA 431
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: A0A7S1UKF3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKF3_9STRA)

HSP 1 Score: 143 bits (360), Expect = 4.930e-36
Identity = 71/163 (43.56%), Postives = 105/163 (64.42%), Query Frame = 1 
Query:   76 LPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKIAPLETAHAASSLQDYLFSLQE-VQQGKMAGYLRGTG-LGVAGYVHLHSPAVSWLLSIVAPGAPRVRGTLVLSYDR 558
            L   +T  +V  DA+ETCRNWFYK ACIR+++PR+ VE ALL CYRFL+ ++E+ QI GRL++++RGVGDP++A Y RC++     ++AP    +A  +L DY+F+     + G +   L+  G + +  Y+HLH+PAV WL   V  GA +     VL + R
Sbjct:  168 LAADFTSADVAVDAKETCRNWFYKVACIRDIVPRVYVEMALLKCYRFLS-DNEYPQICGRLASIIRGVGDPLIAAYARCYLTRIAGEVAPQVRDYAQRALFDYMFAFDSFTRYGGLRRTLKEYGAMDLKAYLHLHAPAVEWLCDCVGAGADQATLAAVLQHYR 329
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: H3GGU9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GGU9_PHYRM)

HSP 1 Score: 142 bits (359), Expect = 7.120e-36
Identity = 81/179 (45.25%), Postives = 109/179 (60.89%), Query Frame = 1 
Query:   52 SGEPARHPLPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKIAPLETAHAA-------SSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVAPGAPR-VRGTLVLSYDRGS 564
            SG+P   PL + +   +V   A ETCRNWFYKTACIRELLPRI +E ALL CYRFL  + E+ QI+ RLS +++GVG+PMVA+Y R ++A   S+  PL T+  A       SSL DY ++    ++ K+  +L    +    Y+ LHSPAV WL+   APGA +     LV+ Y   S
Sbjct:  312 SGQPLPEPLGEHFLSTDVNIQASETCRNWFYKTACIRELLPRIYIEVALLGCYRFLC-DGEYPQIVARLSNMIKGVGEPMVALYARLYLALTSSE--PLGTSSPAEQTLVVSSSLFDYFYAFNWFRRNKLEHWLLTHNMEYGEYLALHSPAVEWLVKCAAPGATQDTFDALVVHYQEYS 487
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: A0A3F2RQD5_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RQD5_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.260e-35
Identity = 75/161 (46.58%), Postives = 103/161 (63.98%), Query Frame = 1 
Query:   52 SGEPARHPLPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKI----APLE-TAHAASSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVAPGA 519
            SG+P   PL   +   ++   A ETCRNWFYKTACIRELLPRI +E ALL CYRFL  + E+ QI+ RLS +++GVG+PMVA+Y R ++A   S++    +P E T   +SSL DY ++    +Q K+  +L    +    Y+ LHSPAV W++   APGA
Sbjct:  170 SGQPLPEPLSDHFMSSDINIQASETCRNWFYKTACIRELLPRIYIEIALLGCYRFLC-DGEYPQIVARLSNMIKGVGEPMVALYARLYLALTSSELLGTTSPTEQTIVVSSSLFDYFYAFSWFRQNKLEHWLITHKMDHGDYLALHSPAVEWIIKCTAPGA 329
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: A0A329STR0_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329STR0_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.340e-35
Identity = 78/177 (44.07%), Postives = 110/177 (62.15%), Query Frame = 1 
Query:   52 SGEPARHPLPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKI----APLE-TAHAASSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVAPGAPR-VRGTLVLSYDRGS 564
            +G+P   PL + +   ++   A ETCRNWFYKTACIRELLPRI +E ALL CYRFL  + E+ QI+ RLS +++G+G+PMVA+Y R ++A   S++    +P E T   +SSL DY ++    +Q K+  +L    +    Y+ LHSPAV WL+   APGA +    TL+  Y   S
Sbjct:  315 NGQPLPEPLGEHFMSSDINIQATETCRNWFYKTACIRELLPRIYIEIALLGCYRFLC-DGEYPQIVARLSNMIKGIGEPMVALYARLYLALTSSELLGTTSPAEQTIVVSSSLFDYFYAFNWFRQKKLEHWLLTHKMEYDEYLALHSPAVEWLVKCAAPGATQDTFDTLLAHYQEYS 490
[Close]
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Match: D0NQN4_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0NQN4_PHYIT)

HSP 1 Score: 140 bits (353), Expect = 4.490e-35
Identity = 80/177 (45.20%), Postives = 108/177 (61.02%), Query Frame = 1 
Query:   52 SGEPARHPLPQGWTCDEVGPDARETCRNWFYKTACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAVYCRCFIAAAGSKI----APLE-TAHAASSLQDYLFSLQEVQQGKMAGYLRGTGLGVAGYVHLHSPAVSWLLSIVAPGAPRVR-GTLVLSYDRGS 564
            +G+P   PL   +   E+   A ETCRNWFYKTACIRELLPRI +E ALL CYRFL  + E+ QI+ RLS +++GVG+PMVA+Y R ++A   S++    +P E T    SSL DY ++    +Q K+  +L    +    Y+ LHSPAV WL+   APGA +    TL+  Y   S
Sbjct:  252 NGQPLPEPLSDHFMSSEINIQATETCRNWFYKTACIRELLPRIYIEIALLGCYRFLC-DGEYPQIVARLSNMIKGVGEPMVALYARLYLALTSSELLGTTSPAEQTIVVNSSLFDYFYAFNWFRQKKLEHWLLTHKMEYDEYLALHSPAVEWLVKCAAPGASQDSFDTLLAHYQEYS 427
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17295.4059.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JSK9_9PHAE6.950e-8069.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLV5_ECTSI6.870e-7974.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8K1CUG7_PYTOL4.890e-4047.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
F0Y850_AURAN1.210e-3746.47Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
K3WSD6_GLOUD4.330e-3748.70Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A7S1UKF3_9STRA4.930e-3643.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
H3GGU9_PHYRM7.120e-3645.25Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A3F2RQD5_9STRA1.260e-3546.58Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A329STR0_9STRA3.340e-3544.07Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
D0NQN4_PHYIT4.490e-3545.20Uncharacterized protein n=2 Tax=Phytophthora infes... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17295contigH-paniculata_contig17295:847..4318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.2
Seed ortholog evalue1.2e-68
Seed eggNOG ortholog2880.D8LLV5
Preferred nameC16orf62
Hectar predicted targeting categoryother localisation
GOsGO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005886,GO:0006810,GO:0006887,GO:0006892,GO:0006893,GO:0006955,GO:0008150,GO:0009987,GO:0012505,GO:0012506,GO:0016020,GO:0016192,GO:0030141,GO:0030659,GO:0030667,GO:0031090,GO:0031410,GO:0031982,GO:0032940,GO:0036230,GO:0042119,GO:0043226,GO:0043227,GO:0043229,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045055,GO:0045321,GO:0046903,GO:0048193,GO:0050896,GO:0051179,GO:0051234,GO:0070820,GO:0071944,GO:0097708,GO:0098588,GO:0098805,GO:0098876,GO:0099503,GO:0101002,GO:0101003
EggNOG free text desc.protein transport
EggNOG OGsKOG3682@1,KOG3682@2759
COG Functional cat.GM
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size579
Cds size579
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17295.4059.1prot_H-paniculata_contig17295.4059.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17295 847..4318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929363.2152507-CDS-H-paniculata_contig17295:846..10261622929363.2152507-CDS-H-paniculata_contig17295:846..1026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 847..1026 -
1691480831.0419126-CDS-H-paniculata_contig17295:846..10261691480831.0419126-CDS-H-paniculata_contig17295:846..1026Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 847..1026 -
1622929363.2299387-CDS-H-paniculata_contig17295:1812..19611622929363.2299387-CDS-H-paniculata_contig17295:1812..1961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 1813..1961 -
1691480831.0563056-CDS-H-paniculata_contig17295:1812..19611691480831.0563056-CDS-H-paniculata_contig17295:1812..1961Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 1813..1961 -
1622929363.2441564-CDS-H-paniculata_contig17295:3293..33541622929363.2441564-CDS-H-paniculata_contig17295:3293..3354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 3294..3354 -
1691480831.0637984-CDS-H-paniculata_contig17295:3293..33541691480831.0637984-CDS-H-paniculata_contig17295:3293..3354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 3294..3354 -
1622929363.2608361-CDS-H-paniculata_contig17295:4129..43181622929363.2608361-CDS-H-paniculata_contig17295:4129..4318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 4130..4318 -
1691480831.0721505-CDS-H-paniculata_contig17295:4129..43181691480831.0721505-CDS-H-paniculata_contig17295:4129..4318Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17295 4130..4318 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17295.4059.1

>prot_H-paniculata_contig17295.4059.1 ID=prot_H-paniculata_contig17295.4059.1|Name=mRNA_H-paniculata_contig17295.4059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=193bp
QGSQVQTTLPTPPGSKTSGEPARHPLPQGWTCDEVGPDARETCRNWFYKT
ACIRELLPRILVEAALLPCYRFLAKEDEFGQILGRLSTLVRGVGDPMVAV
YCRCFIAAAGSKIAPLETAHAASSLQDYLFSLQEVQQGKMAGYLRGTGLG
VAGYVHLHSPAVSWLLSIVAPGAPRVRGTLVLSYDRGSPPRF*
back to top

mRNA from alignment at H-paniculata_contig17295:847..4318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17295.4059.1 ID=mRNA_H-paniculata_contig17295.4059.1|Name=mRNA_H-paniculata_contig17295.4059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3472bp|location=Sequence derived from alignment at H-paniculata_contig17295:847..4318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGCTCGCAGGTGCAGACAACGCTGCCGACGCCTCCTGGGTCGAAAAC
CTCGGGAGAGCCCGCGAGGCACCCATTGCCACAAGGGTGGACTTGCGATG
AGGTGGGCCCCGACGCTAGGGAGACGTGTCGGAACTGGTTCTACAAGACG
GCGTGTATTCGGGAGCTCCTGCCGAGGATATTGGTTGAGGTGACTAGAGT
ACTTATTAAGTACCAGTATCGTTTTCAATATTATTCGTATGTTGTCTCTT
TTTTGCCATATTACGTATCACTAGTCTAGCTCTTTTTTGCGCAGATCGTT
TTTTTTTTTTTAATCTCCTAGGTCAAATGCATGTTTTTTTGTGTAACGTG
TTTTGATTTCGAGAAAAGAAACTTGTTTCCTGCTGTTTGGCTGATAAGTC
CATCGGCCGCCCGGCCGGCGGGGCTTGAAAAACAACGAGAACACAATCCA
TTGTAAAGGATGTGCTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTCAAG
CGTGGCCGGGGGGGGGGGGGGGGGGGGGGGTAAGGTGGGGTGCAGCGGGA
ACTGGGATATATAGTTAGTAGTGAGGCAATCGGGCGGAGCATGGGAAAGC
ATGGAAAGTGGACGTATGGAGAGGGAGATATTGAGAAAGAATGACTCGCG
ACGCCCGAGCGAGATATAGTCGTGAACGAACGCTGCGCTCGAGAAAACTA
TTGCTGCGCTCCCGAGCGCTTTGTGAAAAAAATTGTGAGAGGTCATGGGT
CCAGCCGGAAAATGTTTATGAAATTTGAGGGCTGGGTGATGAGGCAACGA
TAAATTCCTGACCGCTCATGTGCTTCATATGCTTTCTCAATTAGTTTGCG
TGTCCCGATAAACTACCGCTCCATGTGATTTAAGTGTTTGATGCGTTTAG
TTTTTTTTGTTTTTTTGTTTTTTTTTCTCTCTCGCGCGCGGGGGAATGCG
TTCACCTCGACCAGGCGGCGCTCCTTCCCTGCTACCGCTTCCTCGCTAAG
GAGGATGAATTCGGTCAGATCTTGGGTAAGCGAGAAACGTCTCACTACGC
AAGAGAACCATAGCGCTGGCCGTGGTCTCGCTACTTTGACGATCTCGTGT
TGTCGGCGGAGGTCGGGTACGGGGGGAAGGCAGAGGCGGGGGAAGCATAG
GCGAGCAGCGCTGTCTTACGAACATTGGTGAACCGGTGAATTGACATTCA
TTTGGTTTGGTCTGCCCTGGCGTTCCCCGGCTGATGTGCCCGTATGGTAG
TTTTCCTGTTATGCATTATTGTACTCGTTTTTTTGTATCGTTGAGTCTCA
TGTATGAGCGAAGAAGCCGGTCTTTTTGAGCGTTCTGGATTCGTTGGGTT
TCTGTTGAAGGCTGTTGTCTTTCATGAACCCCTTTGGTGTTGTTTCTTGG
ACCTTCGGGATGTGTTGGTTTTTCTGTTGAAGCCTTGGGTCTTTCGAGTC
ATCCCGTCGGTGTTATTATTAGTTGACCGGACCGTCGTGTAGATTGTCAA
TTCAGCCCTATCCCTCACATTCCTTGTTGGATATTTGGTTCGTTAGCGCA
GTGAGTATTCAATGGCAAGATGAACGGAAGTCGCTGGTACGTACCTGAAG
CGCGGTGTCCCAATTCCACCGTTTTTTATCTGATTTTCTCGATAAAAAGT
ATGCGCATACTAAAGTTTGAGGTCAATTTTGCATAACCTACTTGAACTTG
GGTACGATGGAGGAGTTATTACATGTTACATTAGCGTTATGATTATTTGG
ATTCAAGTGGGCTGATTTGTGAAGGAGGCTCCCGGTAAGTACAGAAAGGG
GAAGGGGAGTCATGTTTTTTTGTTTTGTTTTTTTTCTTGTCATTCAATCA
TGTGAAAAGCTTTTTCATGTTTTACGTACACCGTACACACGCAAGTGGTA
CAAGAGGAATAGTTCCTTGTGGAGGTTGTCGTAGCTCGTGTCGTGCCTGG
TCAAAGAGGTCCAAAAAGGTCGTGGTAGTTGGTCATGATGATATCAAGCT
TTTTATGTCCACCAAGCAGCACACCCCGAATAGCCGTCAAGGCCATTTGA
AAGTTGGTTTACCTGGTAGGCATGCGTGGGTGGGTTTGGATGAATTGTAG
GAGTAATGATAGAGGAGCAACAAGTTGTTCCGTTCGCTCAGCGTAGTGTA
CTACTCCAAGCTCCAACTTCTCACAGTGCCGGGGATGGGTACTTGGGCCC
CAGGTTAGGCTGACTTTTTCTAAAATATATGTATACTTTGTTTGCATGAT
GTAATGTGTACACTAAACTCGATTTTACTCCCTGACCCTCCGTACATGTG
CGTATGCGATGCGATGCGATGCTGTGATCTGATCTGATCTGATCTGGCGG
TGGTCAGGCCGTCTGTCGACTCTCGTGCGAGGTGTAGGAGATCCGATGGT
GGCGGTGTACTGTCGCTGCTTCATCGCTGCGGCAGGGAGCAAGATCGCTC
CTTTAGAGACCGCGCACGCCGCCAGCTCGCTGCAGGACTATCTGTTCAGC
TTGCAGGTAAGAGACGTGTATCCGCATGAGAGCAGGGGGGGGGGTGATCT
TGAAGTCAACACTTTACAGTTGACATAAATACACAGCTAACTTGCGAAGG
CTCACTCACCAGTCAACCCGTCTTATTACTTGTTGTGATCTATAGTAGTA
ATGATATTTATGCTGAGGTTATCCAGCCTTGGGTTGGTTTCGGCGATGTA
AATTTGTCAGCAGGATTGACTCGAGGGAGGAGTTGTTCTGCTTGCTATGT
TCAACACTGAGGGGGGAGGAGGTGGTTTTTTGGGGGGGTTTTTTATGGCG
GTTTTAGTGTATCTTAGATATTGCGTTGCGTTGTTTTGTCTATTGGTTTT
CTTCAAGTGGTGCCAACAGACAGGAGTTCTTCGTGCCTGTGTACCGCACA
TTTCGCGTTTTTATTTTTGACCAAGTCTGGACGACCCTGTGAATTTAGCA
ACGTGCATTGCGGCCTATGATGGCCTTGTCGCCCTTTTTTTTCTTTTTTT
TCTCAGTCTGTCGGTGTGCAAATGATGCGTGCGTGTACTCGTACTCCCGA
AGTAAAAAAAATATCGGAGGAACACACAAATACTGTGGCCCACTCGCGTC
CTCTGGGAAGGTGTTACGCCTGCACTCATTGTAGTTGCAGCAGCAGCAGC
AGCAGCAGCTCCTACTTTTCCGTTTATATTTCGTAGCTCTATTCTTTCAT
CGACAAATGCCCCGCGGCTTGCCCTCGTCTTACTTCCTTATCCCCTTCAT
GTTATATACGCTGAATTCATCACCACACTTTAACCCGGCCAGGAGGTGCA
GCAAGGTAAAATGGCTGGATATTTACGTGGGACCGGTCTCGGCGTGGCGG
GGTACGTGCATCTTCACAGTCCTGCCGTGAGCTGGCTCTTGAGTATAGTC
GCCCCCGGCGCGCCCAGGGTGAGAGGAACGCTAGTCTTGTCTTATGACAG
GGGTTCCCCCCCCCGTTTTTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig17295:847..4318-

>mRNA_H-paniculata_contig17295.4059.1 ID=mRNA_H-paniculata_contig17295.4059.1|Name=mRNA_H-paniculata_contig17295.4059.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1158bp|location=Sequence derived from alignment at H-paniculata_contig17295:847..4318- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGCTCGCAGGTGCAGACAACGCTGCCGACGCCTCCTGGGTCGAAAAC
CTCGGGAGAGCCCGCGAGGCACCCATTGCCACAAGGGTGGACTTGCGATG
AGGTGGGCCCCGACGCTAGGGAGACGTGTCGGAACTGGTTCTACAAGACG
GCGTGTATTCGGGAGCTCCTGCCGAGGATATTGGTTGAGCAAGGCTCGCA
GGTGCAGACAACGCTGCCGACGCCTCCTGGGTCGAAAACCTCGGGAGAGC
CCGCGAGGCACCCATTGCCACAAGGGTGGACTTGCGATGAGGTGGGCCCC
GACGCTAGGGAGACGTGTCGGAACTGGTTCTACAAGACGGCGTGTATTCG
GGAGCTCCTGCCGAGGATATTGGTTGAGGCGGCGCTCCTTCCCTGCTACC
GCTTCCTCGCTAAGGAGGATGAATTCGGTCAGATCTTGGGCGGCGCTCCT
TCCCTGCTACCGCTTCCTCGCTAAGGAGGATGAATTCGGTCAGATCTTGG
GCCGTCTGTCGACTCTCGTGCGAGGTGTAGGAGATCCGATGGTGGCGGTG
TACTGTCGCTGCTTCATCGCTGCGGCAGGGAGCAAGATCGCTCCTTTAGA
GACCGCGCACGCCGCCAGCTCGCTGCAGGACTATCTGTTCAGCTTGCAGG
CCGTCTGTCGACTCTCGTGCGAGGTGTAGGAGATCCGATGGTGGCGGTGT
ACTGTCGCTGCTTCATCGCTGCGGCAGGGAGCAAGATCGCTCCTTTAGAG
ACCGCGCACGCCGCCAGCTCGCTGCAGGACTATCTGTTCAGCTTGCAGGA
GGTGCAGCAAGGTAAAATGGCTGGATATTTACGTGGGACCGGTCTCGGCG
TGGCGGGGTACGTGCATCTTCACAGTCCTGCCGTGAGCTGGCTCTTGAGT
ATAGTCGCCCCCGGCGCGCCCAGGGTGAGAGGAACGCTAGTCTTGTCTTA
TGACAGGGGTTCCCCCCCCCGTTTTTGAGAGGTGCAGCAAGGTAAAATGG
CTGGATATTTACGTGGGACCGGTCTCGGCGTGGCGGGGTACGTGCATCTT
CACAGTCCTGCCGTGAGCTGGCTCTTGAGTATAGTCGCCCCCGGCGCGCC
CAGGGTGAGAGGAACGCTAGTCTTGTCTTATGACAGGGGTTCCCCCCCCC
GTTTTTGA
back to top