mRNA_H-paniculata_contig17290.4058.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17290.4058.1
Unique NamemRNA_H-paniculata_contig17290.4058.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17290.4058.1 vs. uniprot
Match: A0A6H5LB52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB52_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 5.410e-17
Identity = 54/127 (42.52%), Postives = 73/127 (57.48%), Query Frame = 1 
Query:    1 FVKTWKIGDVSEYLYQAGMRTKPKPERKRRLDRRGQLSHSTTARATATAPMGAAAAGGAAISATNPDPTTIACADKDKIGAMGGAGGPGQK-SLLVPVRQWRAHETRISSIAGASYHGKADLLVTAG 378
            FVKTW++GD++E++YQ GMR +PKP RK R  R G+   +T   ATA A         + ++A  P              AM  + G  Q  SLL P+ QW+AH+T ++S+ GA Y GK DLLVTAG
Sbjct:  835 FVKTWRLGDITEHVYQTGMRARPKPPRKSRSGR-GRKGSATAGEATAQA---------SPLAAVPP--------------AMADSPGTQQTTSLLQPMHQWQAHKTTVTSVHGADYRGKLDLLVTAG 937
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BLAST of mRNA_H-paniculata_contig17290.4058.1 vs. uniprot
Match: D7FNP1_ECTSI (Similar to WD repeat domain 49 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNP1_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.060e-14
Identity = 50/129 (38.76%), Postives = 68/129 (52.71%), Query Frame = 1 
Query:    1 FVKTWKIGDVSEYLYQAGMRTKPKPERKRRLDRRGQLSHSTTARATATAPMGAAAAGGAAISATNPDPTTIACADKDKIGAMGGAGGPGQK---SLLVPVRQWRAHETRISSIAGASYHGKADLLVTAG 378
            FVKTW++GD++E++YQ GMR +PK      L R+ +    T   ATA   +   AAG  A+                       A  PG +   SLL P+ QW+AH+T ++S+ GA Y GK DLLVTAG
Sbjct:  907 FVKTWRLGDITEHVYQTGMRARPK------LPRKSRSGRGTKGSATAGEQVSPLAAGPPAM-----------------------ADSPGTQQTTSLLQPMHQWQAHKTTVTSVQGADYRGKLDLLVTAG 1006
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17290.4058.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LB52_9PHAE5.410e-1742.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FNP1_ECTSI1.060e-1438.76Similar to WD repeat domain 49 n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17290contigH-paniculata_contig17290:935..2523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D7FNP1
Preferred nameWDR64
Hectar predicted targeting categoryother localisation
EggNOG free text desc.SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
EggNOG OGsKOG0274@1,KOG0274@2759
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size382
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17290.4058.1prot_H-paniculata_contig17290.4058.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17290 935..2523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929363.1314647-CDS-H-paniculata_contig17290:934..9561622929363.1314647-CDS-H-paniculata_contig17290:934..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17290 935..956 +
1691480831.0102828-CDS-H-paniculata_contig17290:934..9561691480831.0102828-CDS-H-paniculata_contig17290:934..956Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17290 935..956 +
1622929363.1487913-CDS-H-paniculata_contig17290:1710..18021622929363.1487913-CDS-H-paniculata_contig17290:1710..1802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17290 1711..1802 +
1691480831.0221784-CDS-H-paniculata_contig17290:1710..18021691480831.0221784-CDS-H-paniculata_contig17290:1710..1802Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17290 1711..1802 +
1622929363.163078-CDS-H-paniculata_contig17290:2256..25231622929363.163078-CDS-H-paniculata_contig17290:2256..2523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17290 2257..2523 +
1691480831.031322-CDS-H-paniculata_contig17290:2256..25231691480831.031322-CDS-H-paniculata_contig17290:2256..2523Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17290 2257..2523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17290.4058.1

>prot_H-paniculata_contig17290.4058.1 ID=prot_H-paniculata_contig17290.4058.1|Name=mRNA_H-paniculata_contig17290.4058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
FVKTWKIGDVSEYLYQAGMRTKPKPERKRRLDRRGQLSHSTTARATATAP
MGAAAAGGAAISATNPDPTTIACADKDKIGAMGGAGGPGQKSLLVPVRQW
RAHETRISSIAGASYHGKADLLVTAGV
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mRNA from alignment at H-paniculata_contig17290:935..2523+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17290.4058.1 ID=mRNA_H-paniculata_contig17290.4058.1|Name=mRNA_H-paniculata_contig17290.4058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1589bp|location=Sequence derived from alignment at H-paniculata_contig17290:935..2523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTGAAGACGTGGAAAATAGGTTGGGGTTTCAAGGGTGGTGTGGGTGG
GACAGGGATGGCGGGCGAGGTGGGGCGGATGGCATGCCGGAATTGGGGAA
GTCATGTTCAAGCAGTTTTTATGCTCTCGAGGATCACCTCGCCTAGTACA
CATAACGTGTTGATCGTGTCGAACGTGTGAATTTCATGAACATCGAAAGG
TGGCACTTATCCTTATTTTAAAGCGGAATTTTGTACAAAGGTTTTTGTGT
TTTTGTGTTTTTGTGGTTTTGTGTTGTAAGCTTCAGGGCTGATTACCTCT
TGAATGCACTTTTGGTCAAGCAACAGTATACCCCCCCCCCCAACTAATCC
GCTCGTTCTGGCCAGAGACCTATTGTACTTCTGCTTCTGGACAACTACCG
GTGCTTCGTGTTTGAAATTTGCCCATGACTGACTACGTGTAGCGACTAAT
GTGGGCAAAATAATGTTAAGCGTATATGTAGCGCACTCTGAATACTTCTT
TGGGACATCGCAATCAATCGTGGACAAGGATCACAAATGGACTCAGTGGG
GTGTCAACGCCCCGTCATATCTCTAATTTTGCTGGCAAGGGTACACAAGT
GGGGTTTGAAGTCAGCTGCATGGTCTCAACATGGGTATAGCAGAGTTATC
ATATGAGCTTTAGTTCTACAGTTCTACCGACGATGACAAGTGAGTTGACT
TACGAATGAAAATCTCTCTAGGTGAACCTCCTCCTCCCCTCTCCCCCCCT
TGGCTCCATCCGGCTACATACCCCAGGAGACGTATCTGAGTACCTTTACC
AGGCGGGCATGAGGACAAAACCTAAGCCAGAGAGGAAAAGACGTCTCGAT
CGAAGGGGTCAACTGTCGGTAAGCAAGTACAGTGAGTCGCCCGGGCGTGG
TGATGCATGTCGGGACGGTGGGTTGGTGGGGGGGGGGCGGGGGGGGGGGG
CACAGCGATTTGGCAAAATGACGCGGTGGGGTTAATTCCTTCTTGGAGAA
TTTTGTAGTCAGAAAGAAAATGTCAAAGAAAGATGGCGGGATGAGTTGCC
GTTTAGCCGATGGGATTGCCGAAGTTTATGGCAAACCATGCGCCGCGTTG
AGGTCAGCAGAACAAATTAACTGTCGTTCTGGTTGACGCTCTTGTTTTTG
CCGTCGTATCAACATGAAAGTGCCACAATGCCCCCATCTTTTTTTTTTTC
TTGTAGTATCCATGTAAATGGCTGGGGAGCGATAAATCGCGCTCCGCTCC
TGAACGCTCATTTCTCATTTCCGTCCGTTTTTTTTCTTCTTCCTTGTGCG
CGATTTATCTTGACTACACTAGCACTCGACTACAGCAAGAGCCACCGCGA
CTGCACCAATGGGCGCAGCAGCAGCAGGTGGCGCTGCTATCTCAGCAACA
AACCCTGACCCGACCACCATCGCTTGTGCCGACAAGGACAAAATCGGCGC
GATGGGGGGCGCAGGAGGGCCGGGGCAAAAATCTCTGCTAGTGCCCGTTC
GCCAGTGGCGAGCCCACGAGACCAGGATCAGCTCAATCGCTGGAGCCAGC
TACCACGGCAAGGCAGACCTGCTCGTCACGGCTGGGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig17290:935..2523+

>mRNA_H-paniculata_contig17290.4058.1 ID=mRNA_H-paniculata_contig17290.4058.1|Name=mRNA_H-paniculata_contig17290.4058.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig17290:935..2523+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTGAAGACGTGGAAAATAGTTTGTGAAGACGTGGAAAATAGGAGACG
TATCTGAGTACCTTTACCAGGCGGGCATGAGGACAAAACCTAAGCCAGAG
AGGAAAAGACGTCTCGATCGAAGGGGTCAACTGTCGGAGACGTATCTGAG
TACCTTTACCAGGCGGGCATGAGGACAAAACCTAAGCCAGAGAGGAAAAG
ACGTCTCGATCGAAGGGGTCAACTGTCGCACTCGACTACAGCAAGAGCCA
CCGCGACTGCACCAATGGGCGCAGCAGCAGCAGGTGGCGCTGCTATCTCA
GCAACAAACCCTGACCCGACCACCATCGCTTGTGCCGACAAGGACAAAAT
CGGCGCGATGGGGGGCGCAGGAGGGCCGGGGCAAAAATCTCTGCTAGTGC
CCGTTCGCCAGTGGCGAGCCCACGAGACCAGGATCAGCTCAATCGCTGGA
GCCAGCTACCACGGCAAGGCAGACCTGCTCGTCACGGCTGGGGTGCACTC
GACTACAGCAAGAGCCACCGCGACTGCACCAATGGGCGCAGCAGCAGCAG
GTGGCGCTGCTATCTCAGCAACAAACCCTGACCCGACCACCATCGCTTGT
GCCGACAAGGACAAAATCGGCGCGATGGGGGGCGCAGGAGGGCCGGGGCA
AAAATCTCTGCTAGTGCCCGTTCGCCAGTGGCGAGCCCACGAGACCAGGA
TCAGCTCAATCGCTGGAGCCAGCTACCACGGCAAGGCAGACCTGCTCGTC
ACGGCTGGGGTG
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