mRNA_H-paniculata_contig1729.4056.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig1729.4056.1 vs. uniprot
Match: A0A6H5JIC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIC2_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 2.790e-10 Identity = 34/69 (49.28%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 1105 TKNALRTRLEMWAKDIPKFVASGGIVDDAADVIPVNLLNARLTPGPIEWDAWASLSLDTWGGLVPITID 1311
T+ ALR+RL WA++IP FV GG ++ IPVN+ R T GP E AWA SLD W GL P+T++
Sbjct: 594 TREALRSRLHFWAREIPIFVEQGGDIEAGVGEIPVNMTVIRATIGPGESSAWAGKSLDNWKGLEPLTVE 662
BLAST of mRNA_H-paniculata_contig1729.4056.1 vs. uniprot
Match: D7G174_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G174_ECTSI) HSP 1 Score: 73.6 bits (179), Expect = 4.860e-10 Identity = 33/69 (47.83%), Postives = 44/69 (63.77%), Query Frame = 1
Query: 1105 TKNALRTRLEMWAKDIPKFVASGGIVDDAADVIPVNLLNARLTPGPIEWDAWASLSLDTWGGLVPITID 1311
T+ A+R+RL WA++IP FV GG ++ IPVN+ R T GP E AWA SLD W GL P+T++
Sbjct: 561 TREAMRSRLHFWAREIPIFVEQGGEIEAGVGEIPVNMTVIRATIGPGESSAWAGKSLDNWKGLEPLTVE 629 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1729.4056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1729.4056.1 >prot_H-paniculata_contig1729.4056.1 ID=prot_H-paniculata_contig1729.4056.1|Name=mRNA_H-paniculata_contig1729.4056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=475bp GEGVSGSAWKGVGVGGGGGGGGGGGKKTASTTQQQKQKAGASTTEKKKTGback to top mRNA from alignment at H-paniculata_contig1729:6233..12760- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1729.4056.1 ID=mRNA_H-paniculata_contig1729.4056.1|Name=mRNA_H-paniculata_contig1729.4056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6528bp|location=Sequence derived from alignment at H-paniculata_contig1729:6233..12760- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1729:6233..12760- >mRNA_H-paniculata_contig1729.4056.1 ID=mRNA_H-paniculata_contig1729.4056.1|Name=mRNA_H-paniculata_contig1729.4056.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2850bp|location=Sequence derived from alignment at H-paniculata_contig1729:6233..12760- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |