mRNA_H-paniculata_contig17285.4054.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17285.4054.1
Unique NamemRNA_H-paniculata_contig17285.4054.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17285.4054.1 vs. uniprot
Match: D7FH68_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH68_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 8.240e-17
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 1 
Query:    1 FSAAQVHSQFVNPTRERLKGLLHGTMSLAAVLYLVLGLCGYLYAYDGTK 147
            F+   VHS FVNPTRERLKGLLHGTM L + LY+VL LCGYLYAY+GTK
Sbjct:  116 FNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEGTK 164
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BLAST of mRNA_H-paniculata_contig17285.4054.1 vs. uniprot
Match: A0A7S2UXQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ2_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.630e-11
Identity = 27/49 (55.10%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 FSAAQVHSQFVNPTRERLKGLLHGTMSLAAVLYLVLGLCGYLYAYDGTK 147
            F+   VHSQ VNPTR+R+K ++H  MSL+ ++YL++GL GY YAY+ TK
Sbjct:  129 FNMLSVHSQLVNPTRQRVKSMIHSAMSLSTLIYLLMGLLGYFYAYENTK 177
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BLAST of mRNA_H-paniculata_contig17285.4054.1 vs. uniprot
Match: A0A7S1Z8F4_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z8F4_TRICV)

HSP 1 Score: 57.4 bits (137), Expect = 3.760e-9
Identity = 27/49 (55.10%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 FSAAQVHSQFVNPTRERLKGLLHGTMSLAAVLYLVLGLCGYLYAYDGTK 147
            ++   VHS  VNPTR R+K +L GT+ L  VL+ V+G+ GYLYAYD TK
Sbjct:   66 YNVLSVHSALVNPTRSRVKFVLDGTIFLCFVLFFVVGMGGYLYAYDETK 114
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BLAST of mRNA_H-paniculata_contig17285.4054.1 vs. uniprot
Match: A0A835YKB4_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB4_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.030e-8
Identity = 24/49 (48.98%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    1 FSAAQVHSQFVNPTRERLKGLLHGTMSLAAVLYLVLGLCGYLYAYDGTK 147
            F+   VH+  VNPTRERLKG++H ++     +YL LG  GY YAY  T+
Sbjct:  195 FNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQ 243
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BLAST of mRNA_H-paniculata_contig17285.4054.1 vs. uniprot
Match: A0A0G4F162_VITBC (Aa_trans domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F162_VITBC)

HSP 1 Score: 50.1 bits (118), Expect = 1.070e-5
Identity = 20/44 (45.45%), Postives = 34/44 (77.27%), Query Frame = 1 
Query:   13 QVHSQFVNPTRERLKGLLHGTMSLAAVLYLVLGLCGYLYAYDGT 144
            ++H++FV PTR R+K ++H ++S+  V+YL++G  GYLYA + T
Sbjct:  264 RLHAEFVMPTRNRVKRVIHSSLSIVMVIYLIVGSFGYLYAIERT 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17285.4054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FH68_ECTSI8.240e-1775.51Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S2UXQ2_9STRA2.630e-1155.10Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S1Z8F4_TRICV3.760e-955.10Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A835YKB4_9STRA2.030e-848.98Transmembrane amino acid transporter protein-domai... [more]
A0A0G4F162_VITBC1.070e-545.45Aa_trans domain-containing protein n=1 Tax=Vitrell... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17285contigH-paniculata_contig17285:5219..5371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue4.3e-13
Seed eggNOG ortholog2880.D7FH68
KEGG koko:K14992
KEGG TC2.A.18.6.8
KEGG Pathwayko04727,map04727
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.amino acid
EggNOG OGsCOG0814@1,KOG1305@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.6582842-CDS-H-paniculata_contig17285:5218..53711622929362.6582842-CDS-H-paniculata_contig17285:5218..5371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17285 5219..5371 +
1691480830.8537247-CDS-H-paniculata_contig17285:5218..53711691480830.8537247-CDS-H-paniculata_contig17285:5218..5371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17285 5219..5371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17285.4054.1prot_H-paniculata_contig17285.4054.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17285 5219..5371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17285.4054.1

>prot_H-paniculata_contig17285.4054.1 ID=prot_H-paniculata_contig17285.4054.1|Name=mRNA_H-paniculata_contig17285.4054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=51bp
FSAAQVHSQFVNPTRERLKGLLHGTMSLAAVLYLVLGLCGYLYAYDGTKV
*
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mRNA from alignment at H-paniculata_contig17285:5219..5371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17285.4054.1 ID=mRNA_H-paniculata_contig17285.4054.1|Name=mRNA_H-paniculata_contig17285.4054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=153bp|location=Sequence derived from alignment at H-paniculata_contig17285:5219..5371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTCCGCCGCTCAGGTGCATTCCCAGTTCGTAAACCCTACCCGCGAGCG
CCTGAAGGGTTTGTTGCACGGCACCATGTCGCTCGCTGCGGTACTCTACT
TGGTTCTAGGCCTCTGTGGTTACCTCTACGCCTACGATGGAACAAAGGTA
TGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17285:5219..5371+

>mRNA_H-paniculata_contig17285.4054.1 ID=mRNA_H-paniculata_contig17285.4054.1|Name=mRNA_H-paniculata_contig17285.4054.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=306bp|location=Sequence derived from alignment at H-paniculata_contig17285:5219..5371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTCCGCCGCTCAGGTGCATTCCCAGTTCGTAAACCCTACCCGCGAGCG
CCTGAAGGGTTTGTTGCACGGCACCATGTCGCTCGCTGCGGTACTCTACT
TGGTTCTAGGCCTCTGTGGTTACCTCTACGCCTACGATGGAACAAAGGTA
TGATTTTCCGCCGCTCAGGTGCATTCCCAGTTCGTAAACCCTACCCGCGA
GCGCCTGAAGGGTTTGTTGCACGGCACCATGTCGCTCGCTGCGGTACTCT
ACTTGGTTCTAGGCCTCTGTGGTTACCTCTACGCCTACGATGGAACAAAG
GTATGA
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