mRNA_H-paniculata_contig17284.4053.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A290WNJ8_9PHAE (Lycopene beta-cyclase n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A290WNJ8_9PHAE) HSP 1 Score: 449 bits (1156), Expect = 6.100e-154 Identity = 221/266 (83.08%), Postives = 241/266 (90.60%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKEGELSAKELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSGAPEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
+KHTAEGSTV LE+G L+CRL++DCSGHYSELVE+DG +NPGVQIAYGAEVEVKDGHAPYDE AMLFMDYRTDY+ E S +E +EL DIPTFLYAMPMGKA+NGRSKIFFEETSLVARPPI+FDLCK+RLY+RL HHGIEVTKV+DEELCYIPMGG +PKL+QRVVAFGGASGLVHAAT YMHVRMLAAS GVA AIA+EL GG GA AAARRAYQALW A AKLQRDFHVFGGEFLMAQ+ +ILRGFFNGFFKLPLPLWA
Sbjct: 159 VKHTAEGSTVELENGMKLSCRLLVDCSGHYSELVERDGVNNPGVQIAYGAEVEVKDGHAPYDEKAMLFMDYRTDYINPEESSPEEQRELRDIPTFLYAMPMGKASNGRSKIFFEETSLVARPPIAFDLCKERLYKRLKHHGIEVTKVVDEELCYIPMGGPIPKLDQRVVAFGGASGLVHAATGYMHVRMLAASRGVAEAIATELKSGGPGASRAAARRAYQALWSAKAKLQRDFHVFGGEFLMAQDTSILRGFFNGFFKLPLPLWA 424
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A290WNI6_9PHAE (Lycopene beta-cyclase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A290WNI6_9PHAE) HSP 1 Score: 442 bits (1137), Expect = 2.840e-151 Identity = 216/266 (81.20%), Postives = 240/266 (90.23%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKEGELSAKELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSGAPEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
++H+ EG++V LE+G + CRL++DCSGHYSELVE+ G HNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYV + +LSA+E K L +IPTFLYAMPMG A+NGR KIFFEETSLVARPPISFDLCK+RL++RL HHGIEVTKV+DEELCYIPMGGA+P LNQRVVAFGGASGLVHAAT YMHVRMLAAS V+ AIA+EL KGG G EAAARRAYQALWPA AKLQRDFHVFGGEFLMAQ+A ILRGFFNGFFK+PLPLWA
Sbjct: 160 MEHSPEGTSVCLENGQQIDCRLLVDCSGHYSELVERVGEHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVDKADLSAEEAKGLDEIPTFLYAMPMGTASNGRKKIFFEETSLVARPPISFDLCKERLHRRLKHHGIEVTKVMDEELCYIPMGGAMPNLNQRVVAFGGASGLVHAATGYMHVRMLAASGPVSRAIAAELKKGGPGTSEAAARRAYQALWPAKAKLQRDFHVFGGEFLMAQQAPILRGFFNGFFKVPLPLWA 425
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A290WNJ9_9PHAE (Lycopene beta-cyclase n=1 Tax=Dictyopteris undulata TaxID=156997 RepID=A0A290WNJ9_9PHAE) HSP 1 Score: 442 bits (1137), Expect = 6.350e-151 Identity = 217/266 (81.58%), Postives = 236/266 (88.72%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKEGELSAKELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSGAPEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
+KH +EG+TV L+DG L CRL+LDC+GHYSELVEKDG HNPGVQIAYGAEVEVKDGH PYDE AMLFMDYRTDYV + +LSA+E KEL ++PTFLYAMPMG+ GR +IFFEETSLVARPPISFDLCK+RL +RL HHGIEVTK+LDEELCYIPMGGALPKL+QRVVAFGGASGLVHA+T YMHVRMLAAS VA AIA EL KGG GAP AAARRAYQALWPA AKLQRDFHVFGGEFLMAQ A LRGFFNGFFK+PLPLWA
Sbjct: 162 VKHASEGTTVCLDDGVELRCRLLLDCTGHYSELVEKDGVHNPGVQIAYGAEVEVKDGHEPYDEKAMLFMDYRTDYVSKDDLSAQEAKELEEVPTFLYAMPMGQGPEGRKRIFFEETSLVARPPISFDLCKERLKRRLEHHGIEVTKLLDEELCYIPMGGALPKLDQRVVAFGGASGLVHASTGYMHVRMLAASFPVAHAIARELKKGGPGAPAAAARRAYQALWPAKAKLQRDFHVFGGEFLMAQHAPALRGFFNGFFKIPLPLWA 427
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A290WNI7_UNDPI (Lycopene beta-cyclase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A290WNI7_UNDPI) HSP 1 Score: 436 bits (1121), Expect = 1.220e-148 Identity = 215/267 (80.52%), Postives = 239/267 (89.51%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKE-GELSAKELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSGAPEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
++H+AEG+T+ L+DG + CRL++D SGH+SELVE+ G HNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYV + ELS KEL+EL +IPTFLYAMPMG+A NGR +IFFEETSLVARPPISFDLCK+RLY+R+ HHGIEVTKV+DEE CYIPMGGA+P L QRVVAFGGASGLVHAAT YMHVRMLAAS GVA AIASEL K G GAP+AAARRAYQALWPA AKLQRDFHVFGGEFLMAQ+A +LRGFFNGFFKLP LWA
Sbjct: 162 VEHSAEGTTMCLDDGKLINCRLVVDSSGHFSELVERVGEHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVDDKSELSEKELRELDEIPTFLYAMPMGEAPNGRRRIFFEETSLVARPPISFDLCKERLYRRMKHHGIEVTKVMDEEFCYIPMGGAMPVLTQRVVAFGGASGLVHAATGYMHVRMLAASGGVARAIASELKKEGPGAPQAAARRAYQALWPAKAKLQRDFHVFGGEFLMAQQAPVLRGFFNGFFKLPTSLWA 428
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A290WNI4_PETFA (Lycopene beta-cyclase n=2 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A290WNI4_PETFA) HSP 1 Score: 433 bits (1114), Expect = 1.190e-147 Identity = 211/266 (79.32%), Postives = 236/266 (88.72%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKEGELSAKELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSGAPEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
++H+AEG++V LEDG + CRL++DCSGHYSELVE+ G HNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYV + LS ++ + L DIPTFLYAMPMG A NG+ +IFFEETSLVARPPI FDLCK+RLY+RL HHGIEVTKV+DEELCYIPMGGA+P L QRVVAFGGASGLVHAAT YMHVRMLAA+ V+ AIA+EL KGG G EAAARRAYQALWP+ AKLQRDFHVFGGEFLMAQ+A +LRGFFNGFFKLPLPLWA
Sbjct: 160 MEHSAEGTSVCLEDGQKIDCRLLVDCSGHYSELVERVGDHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVDKATLSPEDAQGLDDIPTFLYAMPMGAAPNGQRRIFFEETSLVARPPIEFDLCKERLYRRLEHHGIEVTKVMDEELCYIPMGGAMPSLTQRVVAFGGASGLVHAATGYMHVRMLAAAGPVSRAIAAELKKGGPGTSEAAARRAYQALWPSKAKLQRDFHVFGGEFLMAQKAPMLRGFFNGFFKLPLPLWA 425
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A290WNK2_9PHAE (Lycopene beta-cyclase n=1 Tax=Saccharina sculpera TaxID=416830 RepID=A0A290WNK2_9PHAE) HSP 1 Score: 430 bits (1105), Expect = 3.440e-146 Identity = 208/266 (78.20%), Postives = 235/266 (88.35%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKEGELSAKELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSGAPEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
++H+AEG+T+ L+DG + CRL++D SGH+SELVE+ G HNPGVQIAYG EVEVKDGHAPYDENAMLFMDYRTDYV + ELS +E KEL PTFLYAMPMG+A NGR +IFFEETSLVARPPISFDLCK+RLY+R+ HHGIE+TKV+DEE CYIPMGG++P L QRVVA GGASGLVHAAT YMHVRMLAAS GVA AIASEL KGG GA EAAARRAYQALWP+ AKLQRDFHVFGGEFLMAQ+A +LRGFFNGFFKLP+ +WA
Sbjct: 161 VEHSAEGTTMCLDDGQQINCRLVVDSSGHFSELVERVGEHNPGVQIAYGVEVEVKDGHAPYDENAMLFMDYRTDYVDKSELSEEESKELDGTPTFLYAMPMGEAPNGRRRIFFEETSLVARPPISFDLCKERLYRRMKHHGIEITKVMDEEFCYIPMGGSMPVLTQRVVALGGASGLVHAATGYMHVRMLAASGGVARAIASELKKGGPGASEAAARRAYQALWPSKAKLQRDFHVFGGEFLMAQQAPVLRGFFNGFFKLPISVWA 426
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A6H5JIL6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIL6_9PHAE) HSP 1 Score: 432 bits (1110), Expect = 3.820e-146 Identity = 210/266 (78.95%), Postives = 235/266 (88.35%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKEGELSAKELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSGAPEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
L+H+A+G++V L+DG + CR+++DCSGHYSELVE+ G HNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDY + ELS +E++ L D PTFLYAMPMG A NG+ +IFFEETSLVARPPISFDLCK+RLY+RL HHGIEVTKV+DEELCYIPMGGA+P L QRVVAFGGASGLVHAAT YMHVRMLAAS V+ AIA+EL K G G EAAARRAYQALWP+ AKLQRDFHVFGGEFLMAQ A+ LRGFFNGFFKLPLPLWA
Sbjct: 231 LEHSADGTSVRLDDGQQIDCRILVDCSGHYSELVERVGEHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYADKAELSPEEVEGLDDTPTFLYAMPMGAAPNGQRRIFFEETSLVARPPISFDLCKERLYRRLKHHGIEVTKVMDEELCYIPMGGAMPSLTQRVVAFGGASGLVHAATGYMHVRMLAASGAVSRAIAAELKKDGPGTSEAAARRAYQALWPSKAKLQRDFHVFGGEFLMAQPASTLRGFFNGFFKLPLPLWA 496
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A290WNK0_9PHAE (Lycopene beta-cyclase n=3 Tax=Sargassum TaxID=3015 RepID=A0A290WNK0_9PHAE) HSP 1 Score: 411 bits (1057), Expect = 5.230e-139 Identity = 206/267 (77.15%), Postives = 231/267 (86.52%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKEGELSAKELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGS-GAPEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
++H+ EG+++ L+DG + CRL++DCSGH SELVE+ G NPGVQIAYGAEVEV DGHAPYDENAMLFMDYRTDYV E ELSA EL+EL ++PTFLYAMP+GK+ NGR KIFFEETSLVARPPISFDLCK+RL +RL HHGI V KVLDEE CYIPMGGA+PKL+QRVVAFGGA+ LVHAAT YM VRMLAA+ GVA AIASEL K A EAAARRAYQALWPA A+LQRDFHVFGGEFLMAQ A ILRGFF+GFF+LPLPLWA
Sbjct: 156 VEHSTEGTSLRLDDGERIDCRLLVDCSGHRSELVERSGVDNPGVQIAYGAEVEVLDGHAPYDENAMLFMDYRTDYVAETELSADELRELDEVPTFLYAMPLGKSPNGRRKIFFEETSLVARPPISFDLCKERLDRRLKHHGITVAKVLDEEFCYIPMGGAMPKLDQRVVAFGGAAALVHAATGYMQVRMLAAAGGVARAIASELTKEDHPAASEAAARRAYQALWPAKARLQRDFHVFGGEFLMAQHAPILRGFFDGFFRLPLPLWA 422
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A835YM92_9STRA (Lycopene beta cyclase chloroplast n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM92_9STRA) HSP 1 Score: 320 bits (820), Expect = 1.380e-103 Identity = 162/275 (58.91%), Postives = 201/275 (73.09%), Query Frame = 1
Query: 16 QQLKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKEGELSAKELKELIDIPTFLYAMPMGKAANG---RSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSGA----PEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
+ ++HTA GST L+ G +T R+ILDCSGH ++LVE+ GPH+PG QIAYG E +VKD PYD +AMLFMDYRT + A + L +PTFLYAMP+G++ +G ++FFEETSLVARPP++ + CK+RLY+RL HHGIEVTKV +EE C IPMGG+LPK +QRVV F GA GLVHA+T YM VRMLAA+ A AI G+ P+AAARRAY A+WPA A++QRDFH+FGGEFLM Q+ LRGFFN FFK+PLP WA
Sbjct: 149 ETVQHTATGSTFKLDTGDVVTARMILDCSGHNTKLVERQGPHDPGFQIAYGMECDVKDDLGPYDPDAMLFMDYRTSFAP-----AARQQRLRAVPTFLYAMPLGRSGSGGGGAQRVFFEETSLVARPPMAIEECKERLYERLAHHGIEVTKVHEEEFCVIPMGGSLPKFDQRVVGFAGAGGLVHASTGYMQVRMLAAAKPAADAIGRAFAAAGADRANFNPDAAARRAYLAIWPAAARVQRDFHMFGGEFLMQQDVEALRGFFNAFFKVPLPYWA 418
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Match: A0A0G4F4K8_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F4K8_VITBC) HSP 1 Score: 288 bits (736), Expect = 4.430e-90 Identity = 153/274 (55.84%), Postives = 195/274 (71.17%), Query Frame = 1
Query: 22 LKHTAEGSTVSLEDG--TSLTCRLILDCSGHYSELVEKDGPHNPGVQIAYGAEVEVKDGHAPYDENAMLFMDYRTDYVKE---GELSAK-ELKELIDIPTFLYAMPMGKAANGRSKIFFEETSLVARPPISFDLCKDRLYQRLNHHGIEVTKVLDEELCYIPMGGALPKLNQRVVAFGGASGLVHAATAYMHVRMLAASTGVATAIASELNKGGSG--APEAAARRAYQALWPANAKLQRDFHVFGGEFLMAQEATILRGFFNGFFKLPLPLWA 819
++H GS+V L+DG T L +LI+DC+GH S+L+E+DG H+PG QIAYG E + P+DE AMLFMDYRTDY+ E GE + + +L + + PTFLY MP G++A+G +IF EETSLVARPP+SFD CK+R +RL + G+E K+ +EE CYIPMGGA+PK NQRV+AFGGA+G+VHAAT YM RM++ A AIA E+ + G AP+ AAR AY ALWPA + QR+F VFGGEFLM Q LR FF GFF L LP+WA
Sbjct: 209 VRHDDTGSSVRLQDGRSTELRTKLIVDCTGHESKLIERDGRHDPGFQIAYGIMCECE--RHPFDEGAMLFMDYRTDYITEAQKGEPTMQTDLDKAVREPTFLYVMPFGESASGLRRIFLEETSLVARPPMSFDECKERFKKRLAYLGVEPQKIEEEEFCYIPMGGAIPKRNQRVIAFGGAAGVVHAATGYMICRMMSGVAPTAEAIAKEIRQPIDGVFAPDRAARTAYAALWPAQFRRQREFTVFGGEFLMQQNVHNLRAFFRGFFNLELPMWA 480 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17284.4053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17284.4053.1 >prot_H-paniculata_contig17284.4053.1 ID=prot_H-paniculata_contig17284.4053.1|Name=mRNA_H-paniculata_contig17284.4053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=280bp GPTTEQQLKHTAEGSTVSLEDGTSLTCRLILDCSGHYSELVEKDGPHNPGback to top mRNA from alignment at H-paniculata_contig17284:1095..5344+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17284.4053.1 ID=mRNA_H-paniculata_contig17284.4053.1|Name=mRNA_H-paniculata_contig17284.4053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4250bp|location=Sequence derived from alignment at H-paniculata_contig17284:1095..5344+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17284:1095..5344+ >mRNA_H-paniculata_contig17284.4053.1 ID=mRNA_H-paniculata_contig17284.4053.1|Name=mRNA_H-paniculata_contig17284.4053.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1680bp|location=Sequence derived from alignment at H-paniculata_contig17284:1095..5344+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |