mRNA_H-paniculata_contig1727.4046.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1727.4046.1
Unique NamemRNA_H-paniculata_contig1727.4046.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1727.4046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1727contigH-paniculata_contig1727:15961..16486 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size230
Cds size228
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929361.7213833-CDS-H-paniculata_contig1727:15960..159881622929361.7213833-CDS-H-paniculata_contig1727:15960..15988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1727 15961..15988 +
1691480830.514899-CDS-H-paniculata_contig1727:15960..159881691480830.514899-CDS-H-paniculata_contig1727:15960..15988Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1727 15961..15988 +
1622929361.7416213-CDS-H-paniculata_contig1727:16286..164861622929361.7416213-CDS-H-paniculata_contig1727:16286..16486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1727 16287..16486 +
1691480830.5247428-CDS-H-paniculata_contig1727:16286..164861691480830.5247428-CDS-H-paniculata_contig1727:16286..16486Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1727 16287..16486 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1727.4046.1prot_H-paniculata_contig1727.4046.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1727 15961..16486 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1727.4046.1

>prot_H-paniculata_contig1727.4046.1 ID=prot_H-paniculata_contig1727.4046.1|Name=mRNA_H-paniculata_contig1727.4046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
HKQGFHRRGCRIDTTRPFGNSPLYLAATRGSHDAVMKLLKYGASIGDREP
VSGETALHGAAAQGRVQAVQVSLGQ*
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mRNA from alignment at H-paniculata_contig1727:15961..16486+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1727.4046.1 ID=mRNA_H-paniculata_contig1727.4046.1|Name=mRNA_H-paniculata_contig1727.4046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=526bp|location=Sequence derived from alignment at H-paniculata_contig1727:15961..16486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATAAACAAGGGTTCCACCGACGAGGATGTGCGTTGACGATATTCAAGAG
GCCGGGACGGGTCGGGAGCTGATCGATGTCTAAGTCGACAAGTGCAATCA
CATGGACTTGCTTATTTGCCAATTTTTGGTATCCCATAACTCGACAACCA
CAGAGCTTGAGGCTGTGAGACTCGGACTACTGGAAAGAGTCATTGAGGTT
AGACTTTTGACATACCCTTTTTTAACACTTTGTGATTATGAAGCCGCATC
TTCAGTGATTCATTTTGGTTTGTTAATCACTCCTGAAAATTGTACCCGCC
GCTGCTCCACCCCTTGAAAAATTCAGGTCGGATAGATACTACGAGGCCGT
TTGGCAACAGTCCGCTATACCTCGCCGCTACTCGGGGTAGTCACGACGCA
GTAATGAAGCTGCTCAAATATGGCGCTAGTATTGGCGATAGAGAACCAGT
TTCAGGGGAAACGGCTCTCCACGGAGCGGCAGCCCAGGGTCGGGTGCAGG
CGGTTCAAGTAAGCTTGGGTCAGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1727:15961..16486+

>mRNA_H-paniculata_contig1727.4046.1 ID=mRNA_H-paniculata_contig1727.4046.1|Name=mRNA_H-paniculata_contig1727.4046.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig1727:15961..16486+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CATAAACAAGGGTTCCACCGACGAGGATCATAAACAAGGGTTCCACCGAC
GAGGATGTCGGATAGATACTACGAGGCCGTTTGGCAACAGTCCGCTATAC
CTCGCCGCTACTCGGGGTAGTCACGACGCAGTAATGAAGCTGCTCAAATA
TGGCGCTAGTATTGGCGATAGAGAACCAGTTTCAGGGGAAACGGCTCTCC
ACGGAGCGGCAGCCCAGGGTCGGGTGCAGGCGGTTCAAGTAAGCTTGGGT
CAGTGAGTCGGATAGATACTACGAGGCCGTTTGGCAACAGTCCGCTATAC
CTCGCCGCTACTCGGGGTAGTCACGACGCAGTAATGAAGCTGCTCAAATA
TGGCGCTAGTATTGGCGATAGAGAACCAGTTTCAGGGGAAACGGCTCTCC
ACGGAGCGGCAGCCCAGGGTCGGGTGCAGGCGGTTCAAGTAAGCTTGGGT
CAGTGA
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