mRNA_H-paniculata_contig1726.4043.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1726.4043.1
Unique NamemRNA_H-paniculata_contig1726.4043.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1726.4043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1726contigH-paniculata_contig1726:20398..24602 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue1.4e-08
Seed eggNOG ortholog2880.D8LEU6
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Domain with 2 conserved Trp (W) residues
EggNOG OGs2D07S@1,2SD4J@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size571
Cds size570
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1726.4043.1prot_H-paniculata_contig1726.4043.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1726 20398..24602 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929361.4297173-CDS-H-paniculata_contig1726:20397..204211622929361.4297173-CDS-H-paniculata_contig1726:20397..20421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 20398..20421 +
1691480830.4347992-CDS-H-paniculata_contig1726:20397..204211691480830.4347992-CDS-H-paniculata_contig1726:20397..20421Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 20398..20421 +
1622929361.4469383-CDS-H-paniculata_contig1726:20592..206751622929361.4469383-CDS-H-paniculata_contig1726:20592..20675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 20593..20675 +
1691480830.444748-CDS-H-paniculata_contig1726:20592..206751691480830.444748-CDS-H-paniculata_contig1726:20592..20675Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 20593..20675 +
1622929361.467846-CDS-H-paniculata_contig1726:24139..246021622929361.467846-CDS-H-paniculata_contig1726:24139..24602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 24140..24602 +
1691480830.4536533-CDS-H-paniculata_contig1726:24139..246021691480830.4536533-CDS-H-paniculata_contig1726:24139..24602Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 24140..24602 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1726.4043.1

>prot_H-paniculata_contig1726.4043.1 ID=prot_H-paniculata_contig1726.4043.1|Name=mRNA_H-paniculata_contig1726.4043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
NHWHASGKLHLACCLLVQLAPLRRLDHATVDRSSPRLRSQQRETAKIDEI
LRSVLEARPYPLAPSSSRTSTNPPQHTAPLVVDTFARTTSIQTSSRMPCT
WFVWTLYAKFAEICLRNGPSVALNALQQAEFLWSRKASVRRWGGRECGGS
IILIARAQLCQRCPQLIDSREERNQRVTLEGMFVDATLR*
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mRNA from alignment at H-paniculata_contig1726:20398..24602+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1726.4043.1 ID=mRNA_H-paniculata_contig1726.4043.1|Name=mRNA_H-paniculata_contig1726.4043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4205bp|location=Sequence derived from alignment at H-paniculata_contig1726:20398..24602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCATTGGCATGCCTCCGGCAAGGTAATTTCCAAGCTGTGCTACCCAAC
CTTCACGTGAAAGACTGCGGTTTTGCGACTTAATGGAGCAGCTTACAGTG
CATCAAAATCTTACTCTCAGTCTCCTGTCCCTTCCTCAACTTTACCCATA
CGCAGCACCTTGACGTCTGTTCTGCGCGCGTGTACGAAACCGCAGCTACA
CTTGGCCTGCTGCTTACTGGTGCAACTGGCACCGCTTCGCCGCCTAGATC
ATGCTACGGTCGACCGGTCGTCTCCGAGGTGGGTCTTGTGCTGACAATCC
TAATTCCTATGGATCCCCTCGATCACGGTACGACAAACGCGTCCTCTCTC
ATGTCCTACAAAAAATTGAGAAGCAGCTCGGTTCTATTGGGATAAGCATT
GAAATATATCACACCCTAGACAGAGAAATATGTAATGTAGAATAGGTCGA
ACAGTATAAAGTAGCTATAAACTTCGAAGTATACTACCTCTGTCCCATAA
GTCTGGCTTATAGCGGTATTTTGTAAATACGTTTTGCAATGTTCGGTTTC
GTGAAAGATCAAGTATGTCATTCGAAAGCCTACACGTTCAGCTTGCATGT
AAACATCTTCACAATGTTTTTTTTATTCACAATGGTTGAGAACGGGATAT
CTCAACACAATTGTTCTTTTTCGGAAAAGGTAGATTTTGCGAAAATAGCC
GAATAGGCCGAAATCGGCTGAAAATCATGATCATTGCGTCTCACGGACTT
CCGATTAAGAAATAGGTTGTTCCGTTGTATCCCTTGGCGTATCATACTAC
GTAATACAATAAATATACTGTTCATTACTGTCATTGCCCGCATCAACCCG
CCAATTCAAGGCCGCTTCGCAAGCGGCTCGGTCAATCGGGACCAAGCGGT
CCAAACGCCCCTCACGCGGCCTTTTCCTGCTGTCGGTATGCCCAATGTCT
AAATCGTTTCTTCCCAGCGCTCTCAACACTTGGTTGTACCGCTTGAATAG
GTTCTGCCAAACCAACTCTAGAGTACCTGCGTCATACTGGCCGTGCATGA
TCGTAACCCCCTCTACAAGGGCGTCTAACGTACGGTAGCGCTTTTTCCAC
ACTCTAGATTTCAGGGATGCGAAAAAGACCCAAATCGTTGACATTGAAAT
CGAGAGACTGCACCGGCTGCGTTAGGAGCAAGGTGTTCCATCCGTCCTCC
CTGCATGTCAGGTTTAGCTTTCTCGGCCTGCCCTTGCCCATGTGCGGGCT
CGCGTCATCCTGATGCACGACCACTTCCTCCTCCTCCAACCATGATACCT
TTCCCTTGAGTGTGGGAAGACAACCTCCGTCTACCACTCCTGGTACTCGC
TGTCGGTGGTGACGACGCTCGTACTCGTCACACGCCTTTCGCGATGAGTG
GTGCTCCGCTTCGCCTCTTTAATGACGCTAAAACGTCATATCCCGGTCGT
GCGGTCGAACCCGTTGTCAGGATCTGGGCGGGAAACGGCGCAAATGAACA
TCACTTTGGGAATGTGACTCTTGTGCTGCACGTTGATGAGGCCCACCCGC
TTTTCTCCGGAAAACGTTTCAGCCTTCTGTTTTCTTAAAGCAAATCAGAA
TATCATATTTAAAACAAACAAGATGGTGTTATTGAGAGGCTTCGTTTGCG
CTATTATTCATTTGGAAACTCTACGTACACGTGATAAAATGGCTTGCGAA
ACGATGTAAAACCATGTGGTTCAGTCGATGTCGACCTATTCGGCTGTTTG
TGCAAAATCTTCCATTTCCAACACCAAAACGTGTTGAGATACTCGGTTTT
CAACCATTTCGAATTGTATTTTTTTTTTAAGATACCTGTACGCAAGCTGA
ACGTATAGGCTTTCGAAAAATGTGCTTTATTTTTCCTGAAACCTAAAATT
GCAAAAGATATTTACAAAGTACATTGCCGCTCACATTATCTTTGCTGATG
ACGCGTGCAATTTAGATTGGATGAGCAATACGTAATACATGGCATTCGGC
AATACATAGTATGTTATTGGCTCGGCAATATGCCGCATTGAGCAGCAGGC
GATATATATTGCCCGAGCAATAAGTCGTGTTTGCTCTGGTGCAATTTACA
TTGGACATACAATATATCCACCATACTGCATGCGCAATATATGTTGGACT
GGCAACATATCCACCATATTGTACGCTTAACATATTATGGACGGGCAATA
TATCCACCATATTGCACGCTCAATATGTATTGGACCGGCAATATGTCGGC
GGTGCCATATGAGCAAAAAATATCAGTACGCAACATGTATTCTGCCAACA
ATACAATATATTGTTCAAAGCCCTCCAAAAGGGTAACTTTCACTAAACTA
GACCAACCCCCAGTGAAAAGACAGTAAGCTCTGCGATTGGTTCACCGTCC
AATATACACCCCGGACAAGCATGCAATCTGTTGTATTCGTACACCACACA
GCTGATATCCAAGCGCTATATGTGTTAGATTGACAATATATCATCCTCAA
ACATGCACAACATATGTTGACAGTACAACGCATAATGGATATATCAGTTC
AAGTCATATTGACGCCCTCAATACACTGCGTCAAAGAGTGACCAGTATAT
GCTGCAGGGATTCCAATCGAGTTCCAACTTGTTCACCCGCCGGACAAATA
CGAATAATTGGCGTATTCCCCACGAAAATTCCAAGTATTCGCCTGAGTTT
CAGAATGAGCTGACACACGGAAGAAAGTGCCTACCCCTGTCCATTCGATT
TACGAGTATTATTAGCAGTCGTGGGTAGTCTGAGGCACATAAATACACGA
GGTTATTCTGAAACTCAGGCAAACTCTTTTAAATTTTCCTGGCGAGTACG
CCAATTATTCGTATTCGTGCGGGGGGTGAACGTGTTCTAATGTATGCTGC
CACCCAATAGGTTCGCGAGCATAATACTTCGGCTTGGAGGACGTGCAATG
TATGTTGAGTGCTCAGTATACGTGCTTACATCGATAGAGACCTGTAGATG
TAGATATATATATATATTGTCTAAGGTATAAGAAGCTCCCCGTGCTGTCT
ACTCGTCGAGTGTTAAATCTGTCGCTGGCGATGTTTTGCACCGATCCAAC
CAATCATTAGCCTTATTATGAATGGACCTGCGTAAGTATTTACCCCTTGT
ACACCGTGAGTATACCGTTCTGTACCATATATTGTGGACAACACCATATA
GTATGGACAATATCATATCTTACCCAATAGTATGTATTGTCCAAACAATA
CGACTATCCGATGGTATGGCAATACATGTTATCCGAACAATATGACCGCC
CGTTTGTGTTGCAATATACATTGGCCGAACAGTATGACTTCCGATCGCGT
TGCAATATATATTGGCTGAATAGTATGAACTATCAAATACGTGTCAATGT
ATGTTATTCGGACAATATAATCGGCCATTTCATGTCGAGTATATCTTGGT
GAAGCAAAACCCTCCCTCGCGATGGGCGCAATATACCTTGTGCGTTCAAT
GTAGACTTGGTATCGCCAGCTCAATTTATATTGCGCCGGCAGCAAGTCAC
GCAGTATGGATGTAAACCTATCGATATATATCGAAAACACATTGCTTTGT
CTAAGGTGTGAAATATATCCGACGACGTTGCGGTTCTAAGTTGAAATGAT
TCGGGTGTATCCCTCAACTTTGCCATTTCTCAACCCGCGGGACCTCCTCC
CGTCTCCTCGATATTCCGGCCTAACCCCCGTGCTATGCACAGGCTACGCT
CACAACAAAGGGAGACAGCAAAGATAGACGAGATTCTTCGCTCTGTTCTG
GAAGCCAGACCCTACCCTCTCGCGCCGTCCTCGTCACGTACTTCAACAAA
TCCACCGCAGCATACTGCTCCACTCGTAGTTGATACCTTCGCGAGAACAA
CCAGCATCCAGACATCGTCTCGGATGCCCTGCACTTGGTTCGTGTGGACC
CTCTACGCAAAGTTCGCTGAGATATGCCTACGGAATGGTCCAAGCGTGGC
CCTGAATGCTCTCCAGCAAGCTGAGTTTTTGTGGTCTAGGAAGGCATCGG
TAAGACGATGGGGGGGCAGGGAATGCGGAGGATCGATTATTTTGATTGCT
CGTGCTCAGCTGTGCCAACGATGCCCCCAACTTATCGACTCTAGGGAAGA
GAGGAATCAGAGAGTCACGCTGGAGGGAATGTTCGTGGACGCAACGTTAA
GGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig1726:20398..24602+

>mRNA_H-paniculata_contig1726.4043.1 ID=mRNA_H-paniculata_contig1726.4043.1|Name=mRNA_H-paniculata_contig1726.4043.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig1726:20398..24602+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACCATTGGCATGCCTCCGGCAAGAACCATTGGCATGCCTCCGGCAAGCT
ACACTTGGCCTGCTGCTTACTGGTGCAACTGGCACCGCTTCGCCGCCTAG
ATCATGCTACGGTCGACCGGTCGTCTCCGAGCTACACTTGGCCTGCTGCT
TACTGGTGCAACTGGCACCGCTTCGCCGCCTAGATCATGCTACGGTCGAC
CGGTCGTCTCCGAGGCTACGCTCACAACAAAGGGAGACAGCAAAGATAGA
CGAGATTCTTCGCTCTGTTCTGGAAGCCAGACCCTACCCTCTCGCGCCGT
CCTCGTCACGTACTTCAACAAATCCACCGCAGCATACTGCTCCACTCGTA
GTTGATACCTTCGCGAGAACAACCAGCATCCAGACATCGTCTCGGATGCC
CTGCACTTGGTTCGTGTGGACCCTCTACGCAAAGTTCGCTGAGATATGCC
TACGGAATGGTCCAAGCGTGGCCCTGAATGCTCTCCAGCAAGCTGAGTTT
TTGTGGTCTAGGAAGGCATCGGTAAGACGATGGGGGGGCAGGGAATGCGG
AGGATCGATTATTTTGATTGCTCGTGCTCAGCTGTGCCAACGATGCCCCC
AACTTATCGACTCTAGGGAAGAGAGGAATCAGAGAGTCACGCTGGAGGGA
ATGTTCGTGGACGCAACGTTAAGGTGAGCTACGCTCACAACAAAGGGAGA
CAGCAAAGATAGACGAGATTCTTCGCTCTGTTCTGGAAGCCAGACCCTAC
CCTCTCGCGCCGTCCTCGTCACGTACTTCAACAAATCCACCGCAGCATAC
TGCTCCACTCGTAGTTGATACCTTCGCGAGAACAACCAGCATCCAGACAT
CGTCTCGGATGCCCTGCACTTGGTTCGTGTGGACCCTCTACGCAAAGTTC
GCTGAGATATGCCTACGGAATGGTCCAAGCGTGGCCCTGAATGCTCTCCA
GCAAGCTGAGTTTTTGTGGTCTAGGAAGGCATCGGTAAGACGATGGGGGG
GCAGGGAATGCGGAGGATCGATTATTTTGATTGCTCGTGCTCAGCTGTGC
CAACGATGCCCCCAACTTATCGACTCTAGGGAAGAGAGGAATCAGAGAGT
CACGCTGGAGGGAATGTTCGTGGACGCAACGTTAAGGTGA
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