mRNA_H-paniculata_contig1726.4042.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1726.4042.1
Unique NamemRNA_H-paniculata_contig1726.4042.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1726.4042.1 vs. uniprot
Match: A0A6H5KGL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 5.430e-12
Identity = 47/112 (41.96%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:   19 YNGTVGNKCDHVERWRSRCFGGPVTAVGRHFLEKRAQVARDARRKTILGVTDAARFKHAGRQLRCEAAVNALEKMLLSLNSRACIGRERHELPEAHVERLLDMVDRLAFSSS 354
            + G  G      +R R+  FG P+T +G+  L +R      ARR+ ILG TDA R  H GRQLR  A++NALE++  +LN+R    RE  ++  AH+  LLD+V R  FS S
Sbjct: 2189 WGGCGGIDLVREKRRRTDAFG-PLTPLGQR-LARRYNAGVAARRRRILGETDAFRAVHVGRQLRIGASLNALERVERALNARLSCAREA-KVSSAHIAELLDVVGRFVFSDS 2297
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BLAST of mRNA_H-paniculata_contig1726.4042.1 vs. uniprot
Match: D8LEU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU6_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.660e-10
Identity = 43/100 (43.00%), Postives = 61/100 (61.00%), Query Frame = 1 
Query:   55 ERWRSRCFGGPVTAVGRHFLEKRAQVARDARRKTILGVTDAARFKHAGRQLRCEAAVNALEKMLLSLNSRACIGRERHELPEAHVERLLDMVDRLAFSSS 354
            +R R+  FG P+T +G+  L +R      ARR+ I+G TDA R  H GRQLR  A++NALE++  +L++R    RE   +  AH+  LLD+V R  FS S
Sbjct: 2059 KRRRTDAFG-PLTPLGQR-LARRYNAGVAARRRRIIGETDAFRAVHVGRQLRIGASLNALERVERALDARLSCAREA-TVSSAHIAELLDVVGRFVFSDS 2155
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1726.4042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KGL4_9PHAE5.430e-1241.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEU6_ECTSI1.660e-1043.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1726contigH-paniculata_contig1726:15688..16041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score66.6
Seed ortholog evalue8.7e-09
Seed eggNOG ortholog2880.D8LEU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain with 2 conserved Trp (W) residues
EggNOG OGs2D07S@1,2SD4J@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size356
Cds size354
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929361.3796568-CDS-H-paniculata_contig1726:15687..160411622929361.3796568-CDS-H-paniculata_contig1726:15687..16041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 15688..16041 +
1691480830.4251814-CDS-H-paniculata_contig1726:15687..160411691480830.4251814-CDS-H-paniculata_contig1726:15687..16041Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 15688..16041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1726.4042.1prot_H-paniculata_contig1726.4042.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1726 15688..16041 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1726.4042.1

>prot_H-paniculata_contig1726.4042.1 ID=prot_H-paniculata_contig1726.4042.1|Name=mRNA_H-paniculata_contig1726.4042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
PVRSPPYNGTVGNKCDHVERWRSRCFGGPVTAVGRHFLEKRAQVARDARR
KTILGVTDAARFKHAGRQLRCEAAVNALEKMLLSLNSRACIGRERHELPE
AHVERLLDMVDRLAFSSS
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mRNA from alignment at H-paniculata_contig1726:15688..16041+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1726.4042.1 ID=mRNA_H-paniculata_contig1726.4042.1|Name=mRNA_H-paniculata_contig1726.4042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=354bp|location=Sequence derived from alignment at H-paniculata_contig1726:15688..16041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTTCGTTCTCCTCCTTACAACGGTACCGTAGGCAACAAATGTGATCA
TGTCGAGAGATGGCGTTCGCGTTGTTTTGGAGGCCCCGTGACTGCAGTGG
GGCGTCATTTCCTTGAGAAACGAGCGCAGGTCGCTCGTGACGCCCGTCGA
AAAACAATTCTTGGTGTCACGGATGCCGCTCGATTCAAGCATGCTGGACG
ACAACTGCGGTGTGAGGCAGCGGTCAATGCTCTTGAGAAGATGCTACTCT
CCCTGAACAGCCGTGCATGCATTGGCCGAGAGAGACATGAGCTCCCTGAA
GCACACGTGGAGCGCTTGCTGGATATGGTAGACAGGTTGGCTTTTTCGAG
CTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig1726:15688..16041+

>mRNA_H-paniculata_contig1726.4042.1 ID=mRNA_H-paniculata_contig1726.4042.1|Name=mRNA_H-paniculata_contig1726.4042.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig1726:15688..16041+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCAGTTCGTTCTCCTCCTTACAACGGTACCGTAGGCAACAAATGTGATCA
TGTCGAGAGATGGCGTTCGCGTTGTTTTGGAGGCCCCGTGACTGCAGTGG
GGCGTCATTTCCTTGAGAAACGAGCGCAGGTCGCTCGTGACGCCCGTCGA
AAAACAATTCTTGGTGTCACGGATGCCGCTCGATTCAAGCATGCTGGACG
ACAACTGCGGTGTGAGGCAGCGGTCAATGCTCTTGAGAAGATGCTACTCT
CCCTGAACAGCCGTGCATGCATTGGCCGAGAGAGACATGAGCTCCCTGAA
GCACACGTGGAGCGCTTGCTGGATATGGTAGACAGGTTGGCTTTTTCGAG
CTCGCCAGTTCGTTCTCCTCCTTACAACGGTACCGTAGGCAACAAATGTG
ATCATGTCGAGAGATGGCGTTCGCGTTGTTTTGGAGGCCCCGTGACTGCA
GTGGGGCGTCATTTCCTTGAGAAACGAGCGCAGGTCGCTCGTGACGCCCG
TCGAAAAACAATTCTTGGTGTCACGGATGCCGCTCGATTCAAGCATGCTG
GACGACAACTGCGGTGTGAGGCAGCGGTCAATGCTCTTGAGAAGATGCTA
CTCTCCCTGAACAGCCGTGCATGCATTGGCCGAGAGAGACATGAGCTCCC
TGAAGCACACGTGGAGCGCTTGCTGGATATGGTAGACAGGTTGGCTTTTT
CGAGCTCG
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