mRNA_H-paniculata_contig1726.4041.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1726.4041.1
Unique NamemRNA_H-paniculata_contig1726.4041.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1726.4041.1 vs. uniprot
Match: D8LEU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEU6_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 1.400e-9
Identity = 42/84 (50.00%), Postives = 54/84 (64.29%), Query Frame = 1 
Query:    7 QLKKGIDIGSIAVERAHGIRRESQAVKLADELRCIASSQANAAAAMAQAGAQLVDEALAEVEDFPMASLPPSSNVNDTVPGAET 258
            +L+ G+DIGS+A  RA  IRR SQA +LADELR IAS QA A+ A+  AGAQL+ +A AE       +L  SS+ +D  P   T
Sbjct: 1536 ELRSGVDIGSVAAARAQAIRRGSQAGRLADELRLIASGQAAASLALGDAGAQLIADAEAEKPIPREYALSRSSSTHDHNPLGRT 1619
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BLAST of mRNA_H-paniculata_contig1726.4041.1 vs. uniprot
Match: A0A6H5KGL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGL4_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 4.800e-9
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    7 QLKKGIDIGSIAVERAHGIRRESQAVKLADELRCIASSQANAAAAMAQAGAQLVDEALAE 186
            +L+ G+DIGS+A  RA  IRR SQA +LADELR IAS QA A+ A+  AGAQL+ +A AE
Sbjct: 1670 KLRSGVDIGSVAAARAQAIRRGSQAGRLADELRLIASGQAAASLALGDAGAQLIADAEAE 1729
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1726.4041.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEU6_ECTSI1.400e-950.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KGL4_9PHAE4.800e-960.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1726contigH-paniculata_contig1726:14038..14760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.9
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog2880.D8LEU6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Domain with 2 conserved Trp (W) residues
EggNOG OGs2D07S@1,2SD4J@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size405
Cds size405
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929361.3215797-CDS-H-paniculata_contig1726:14037..141051622929361.3215797-CDS-H-paniculata_contig1726:14037..14105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 14038..14105 +
1691480830.408542-CDS-H-paniculata_contig1726:14037..141051691480830.408542-CDS-H-paniculata_contig1726:14037..14105Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 14038..14105 +
1622929361.3352559-CDS-H-paniculata_contig1726:14423..147601622929361.3352559-CDS-H-paniculata_contig1726:14423..14760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 14424..14760 +
1691480830.4175377-CDS-H-paniculata_contig1726:14423..147601691480830.4175377-CDS-H-paniculata_contig1726:14423..14760Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1726 14424..14760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1726.4041.1prot_H-paniculata_contig1726.4041.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1726 14038..14760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1726.4041.1

>prot_H-paniculata_contig1726.4041.1 ID=prot_H-paniculata_contig1726.4041.1|Name=mRNA_H-paniculata_contig1726.4041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=135bp
MHQLKKGIDIGSIAVERAHGIRRESQAVKLADELRCIASSQANAAAAMAQ
AGAQLVDEALAEVEDFPMASLPPSSNVNDTVPGAETEDTCKRVPYAAIAE
TPAARFAAELQPDAECTSSSKSDRETVGFRNGAVS
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mRNA from alignment at H-paniculata_contig1726:14038..14760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1726.4041.1 ID=mRNA_H-paniculata_contig1726.4041.1|Name=mRNA_H-paniculata_contig1726.4041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at H-paniculata_contig1726:14038..14760+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCAGCTTAAAAAGGGCATCGATATTGGAAGCATCGCCGTTGAGCG
AGCACACGGCATTCGCAGGTAGATCGGTCAACGAAATGTTAAAAATAGTT
TCCCTTACGTCGGGTATGGCGGAAACTCCCAGTCTCTGGATGATCAGTGC
GAATTTTTGAAGGCACTGATATCTCCTGCATATATTGCCTCTTCGTGACG
GCCTTTCGGAGAGTCGAATAATACCTGAGCAAAGTCATCAGGCGGTGTAC
GTTCTCCATGCTGTAGACTCTACACCACAGTTCGTTTTAATAGCTTATAC
ACAATGCGCTCGTTCGTCATTATTATGATCCAGCCCCATCCCAATCATAC
GCTGCCACGTCGAACTACATCTCACCTTTTGGGCAGGGAAAGTCAGGCGG
TCAAGCTTGCCGACGAGCTGAGATGTATAGCTTCCAGTCAAGCTAACGCT
GCTGCAGCCATGGCACAAGCCGGAGCACAGCTCGTTGACGAAGCTTTGGC
GGAAGTAGAGGATTTCCCAATGGCTTCGCTGCCGCCTTCTTCTAACGTGA
ACGACACTGTTCCTGGAGCGGAAACAGAAGATACGTGCAAAAGAGTACCC
TACGCGGCAATCGCAGAAACACCGGCGGCACGCTTTGCTGCTGAGCTCCA
ACCTGACGCAGAATGCACAAGTTCATCGAAGAGCGATCGGGAAACGGTAG
GCTTCCGCAATGGTGCCGTCAGT
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Coding sequence (CDS) from alignment at H-paniculata_contig1726:14038..14760+

>mRNA_H-paniculata_contig1726.4041.1 ID=mRNA_H-paniculata_contig1726.4041.1|Name=mRNA_H-paniculata_contig1726.4041.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=810bp|location=Sequence derived from alignment at H-paniculata_contig1726:14038..14760+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCATCAGCTTAAAAAGGGCATCGATATTGGAAGCATCGCCGTTGAGCG
AGCACACGGCATTCGCAGATGCATCAGCTTAAAAAGGGCATCGATATTGG
AAGCATCGCCGTTGAGCGAGCACACGGCATTCGCAGGGAAAGTCAGGCGG
TCAAGCTTGCCGACGAGCTGAGATGTATAGCTTCCAGTCAAGCTAACGCT
GCTGCAGCCATGGCACAAGCCGGAGCACAGCTCGTTGACGAAGCTTTGGC
GGAAGTAGAGGATTTCCCAATGGCTTCGCTGCCGCCTTCTTCTAACGTGA
ACGACACTGTTCCTGGAGCGGAAACAGAAGATACGTGCAAAAGAGTACCC
TACGCGGCAATCGCAGAAACACCGGCGGCACGCTTTGCTGCTGAGCTCCA
ACCTGACGCAGAATGCACAAGTTCATCGAAGAGCGATCGGGAAACGGTAG
GCTTCCGCAATGGTGCCGTCAGTGGAAAGTCAGGCGGTCAAGCTTGCCGA
CGAGCTGAGATGTATAGCTTCCAGTCAAGCTAACGCTGCTGCAGCCATGG
CACAAGCCGGAGCACAGCTCGTTGACGAAGCTTTGGCGGAAGTAGAGGAT
TTCCCAATGGCTTCGCTGCCGCCTTCTTCTAACGTGAACGACACTGTTCC
TGGAGCGGAAACAGAAGATACGTGCAAAAGAGTACCCTACGCGGCAATCG
CAGAAACACCGGCGGCACGCTTTGCTGCTGAGCTCCAACCTGACGCAGAA
TGCACAAGTTCATCGAAGAGCGATCGGGAAACGGTAGGCTTCCGCAATGG
TGCCGTCAGT
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