mRNA_H-paniculata_contig10622.404.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: D8LDT3_ECTSI (ATP-binding cassette transporter, subfamily B, member 4, group TAP protein PpABCB4 MET type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDT3_ECTSI) HSP 1 Score: 296 bits (758), Expect = 3.240e-91 Identity = 146/176 (82.95%), Postives = 158/176 (89.77%), Query Frame = 1 Query: 1 SQVSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
+ VSPC YMLGTL SN +LL GG+VMCFVTSWRLSMLAFTTVGPIYHITQ YAKWSQQLN+EIYVAY EANGHATEAL N+RTVKAMSTE+QEM KYD ATQVAL KG+KDSFGSA TNAMSSYLD GAGALI+WYGGSL M+ + RM+AGRLITYQLYWNMINNSWQ LLG+IS
Sbjct: 536 AMVSPCTYMLGTLFSNILLLAGGMVMCFVTSWRLSMLAFTTVGPIYHITQRYAKWSQQLNVEIYVAYGEANGHATEALSNVRTVKAMSTEVQEMAKYDTATQVALDKGVKDSFGSAGTNAMSSYLDLGAGALILWYGGSLAMEDDRRMTAGRLITYQLYWNMINNSWQALLGVISS 711
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A7S1DV78_HEMAN (Hypothetical protein (Fragment) n=5 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DV78_HEMAN) HSP 1 Score: 209 bits (531), Expect = 1.900e-60 Identity = 101/174 (58.05%), Postives = 136/174 (78.16%), Query Frame = 1 Query: 7 VSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
VSP Q +G+LLSN + L+GGV +CF TSWRLSMLAFTTVGPI ITQVYA WSQ LN +IY A A ANG ATEALGN+RT+KAMSTE E+ Y +T+VAL G++D++G+A N ++SY+D A L++WYGG L + + RM+AG+LITYQLYWNM+++S+++L+ +++
Sbjct: 400 VSPIQSSMGSLLSNTIRLIGGVALCFYTSWRLSMLAFTTVGPIITITQVYAAWSQGLNRQIYAALAHANGIATEALGNVRTIKAMSTEEMEVGNYRDSTRVALSTGVRDAWGTAGMNTINSYMDLAANVLVLWYGGWLAIQHDGRMTAGKLITYQLYWNMMDSSYKSLIDMVTS 573
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A7S0EEJ0_9EUKA (Hypothetical protein (Fragment) n=2 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EEJ0_9EUKA) HSP 1 Score: 189 bits (479), Expect = 2.750e-57 Identity = 92/178 (51.69%), Postives = 132/178 (74.16%), Query Frame = 1 Query: 1 SQVSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVM--DGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
+ +SP Q++L + +SN +LLVGGVVMCFVTSWRLSMLA++TV PI HIT+ YAKWS +N +I+ Y++ ATEA+ N+RTV+A+S+E +E+ KYD AL KG++D+ A T + ++YLD GAG LI+WYGGS+ M +G ++ G LI YQLYWNMIN ++Q+L ++++
Sbjct: 65 AMISPIQFVLSSTISNLILLVGGVVMCFVTSWRLSMLAYSTVLPIMHITETYAKWSGNINRQIFQHYSDGAAVATEAVTNVRTVRAVSSEAREIDKYDETMTKALRKGVRDAIVGAATVSFNNYLDLGAGVLILWYGGSIAMSPEGASVLTVGSLIKYQLYWNMINGAYQSLNNVLNQ 242
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A7S0U4T8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0U4T8_HEMAN) HSP 1 Score: 197 bits (502), Expect = 3.450e-56 Identity = 97/174 (55.75%), Postives = 129/174 (74.14%), Query Frame = 1 Query: 7 VSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
VSP Q +G LLSN + LVGGV +CF TSWRLSMLAFTTVGPI TQ YA WSQ LN +IY A A ANG ATEAL N+R +KAMSTE E+ +++A + AL G++D++G A N ++SY+D A L++WYGG L + + RM+AG+LITYQLYW M+++S++ L+ I+S+
Sbjct: 269 VSPIQISMGQLLSNTIRLVGGVALCFYTSWRLSMLAFTTVGPILAFTQAYASWSQGLNRQIYAALAHANGLATEALCNVRAIKAMSTEDVEVASFEKAARAALTVGVRDAWGGAGMNTINSYMDLAANVLVLWYGGWLAIQHDGRMTAGKLITYQLYWTMMDSSYKQLIDILSQ 442
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A7R9TGT2_9VIRI (Hypothetical protein (Fragment) n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TGT2_9VIRI) HSP 1 Score: 194 bits (493), Expect = 3.730e-56 Identity = 98/176 (55.68%), Postives = 133/176 (75.57%), Query Frame = 1 Query: 1 SQVSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
+ VSP Q +LG+ +SNA LVGG+VMCFVTSWRLSMLAFTTV P+ +TQ YAKWSQ+LN EI+ EA+ A +ALGNIRTV+A STE E+ KY T+ A+ KG++D+ G A + A+++YLD GA L++WYGG +VM G+ ++AG LITYQLYWNM+ +S+++L +I+
Sbjct: 67 AMVSPVQTVLGSTVSNAATLVGGLVMCFVTSWRLSMLAFTTVLPVSMVTQRYAKWSQRLNREIFSKLGEASTVANDALGNIRTVRAFSTEPAEIHKYTTKTREAMQKGVRDAVGGAGSYALNNYLDLGAMVLMLWYGGVIVMSGDGSLTAGGLITYQLYWNMLQSSFKSLQNVITS 242
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A0M0JFP4_9EUKA (Lipid a export ATP-binding permease protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JFP4_9EUKA) HSP 1 Score: 196 bits (497), Expect = 1.140e-55 Identity = 96/176 (54.55%), Postives = 130/176 (73.86%), Query Frame = 1 Query: 1 SQVSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
+ + P Q L TLLSN +LL GGVVMCFVTSWRLSMLAFTTV PI H+T+ YA WS ++N +IY YA+ TEA N+RTV+A+S+E E+ +++ ++AL KG+KD+ AF+NA ++YLD GAG LI+WYGGS+ M+ E ++ G LITYQLYWNM+NNS Q L ++++
Sbjct: 489 AMIQPLQNTLATLLSNLILLFGGVVMCFVTSWRLSMLAFTTVLPIMHVTESYAWWSGKINKQIYQHYADGASIVTEAFQNVRTVRAVSSEPFEIERFEVTLRLALSKGVKDAIFGAFSNAFNNYLDLGAGVLILWYGGSIAMEPEGSITVGNLITYQLYWNMLNNSLQALNNVLNE 664
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A7S0YQB2_9CRYP (Hypothetical protein n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YQB2_9CRYP) HSP 1 Score: 197 bits (502), Expect = 1.510e-55 Identity = 97/174 (55.75%), Postives = 129/174 (74.14%), Query Frame = 1 Query: 7 VSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
VSP Q +G LLSN + LVGGV +CF TSWRLSMLAFTTVGPI TQ YA WSQ LN +IY A A ANG ATEAL N+R +KAMSTE E+ +++A + AL G++D++G A N ++SY+D A L++WYGG L + + RM+AG+LITYQLYW M+++S++ L+ I+S+
Sbjct: 471 VSPIQISMGQLLSNTIRLVGGVALCFYTSWRLSMLAFTTVGPILAFTQAYASWSQGLNRQIYAALAHANGLATEALCNVRAIKAMSTEDVEVASFEKAARAALTVGVRDAWGGAGMNTINSYMDLAANVLVLWYGGWLAIQHDGRMTAGKLITYQLYWTMMDSSYKQLIDILSQ 644
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A7S0L5H2_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0L5H2_9EUKA) HSP 1 Score: 191 bits (484), Expect = 1.290e-54 Identity = 94/176 (53.41%), Postives = 128/176 (72.73%), Query Frame = 1 Query: 1 SQVSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
+ V+P L TL+SN+MLL+GGV+MCFVTSWRLSM+A+TTV PI H+T+ YA WS + N +I+ YA+A+ TEA+ NIRTV+++S+E E K AL KGI+D+F AF+ A ++YLD GAG LI+WYGG++ M G+ ++ G LI YQLYWNMINNSWQ L +++
Sbjct: 330 AMVAPVTTTLSTLISNSMLLLGGVIMCFVTSWRLSMVAYTTVLPIMHVTEAYAIWSGKKNRQIFQHYADASAQTTEAITNIRTVRSVSSEELEQDKVGDFLSKALRKGIQDAFLGAFSAAFNNYLDLGAGVLILWYGGAIAMKGDGSITVGSLIRYQLYWNMINNSWQALNNLLNS 505
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A7S3FCF0_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FCF0_9VIRI) HSP 1 Score: 187 bits (476), Expect = 1.100e-52 Identity = 94/176 (53.41%), Postives = 129/176 (73.30%), Query Frame = 1 Query: 1 SQVSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
+ VSP Q +LG+ + N LL+GG+ MCFVTSWRLSMLAFTTV PI +T YAKWSQ+LN EI+ EA A +ALGNIRTV+A STE +E+ KY T A+ KG++D+ G A + A++SYLD GA L++WYGG +V+ G+ ++AG LITYQLYWNM+ +S+++L +++
Sbjct: 212 AMVSPVQTVLGSTVQNLALLIGGLAMCFVTSWRLSMLAFTTVLPISIVTHRYAKWSQKLNREIFSKLGEATTVANDALGNIRTVRAFSTEPRELGKYTTKTLEAMQKGVRDAVGGASSFALNSYLDLGAMVLMLWYGGHIVLSGDGTLTAGGLITYQLYWNMLQSSFKSLQNVMTS 387
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Match: A0A6B2LJ10_9EUKA (ABC transmembrane type-1 domain-containing protein (Fragment) n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2LJ10_9EUKA) HSP 1 Score: 173 bits (438), Expect = 7.800e-52 Identity = 82/174 (47.13%), Postives = 121/174 (69.54%), Query Frame = 1 Query: 7 VSPCQYMLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQLNMEIYVAYAEANGHATEALGNIRTVKAMSTELQEMTKYDRATQVALGKGIKDSFGSAFTNAMSSYLDQGAGALIMWYGGSLVMDGEDRMSAGRLITYQLYWNMINNSWQNLLGIISK 528
++P Q ML T+LS + L+GG+VMC TSW+LS+LAFTT+GPI I ++YAKWS ++ +I+ A +AN ATEAL NIRTV+A S+E++E KY A AL GIKD++ A T A + Y++ L++WYGGS+ M+ ++ G+LIT+QLYWNM+ NS+ ++ ++
Sbjct: 2 IAPAQTMLSTMLSAILSLLGGLVMCLYTSWQLSVLAFTTIGPIITIVRLYAKWSSRIGRQIWAALGDANAFATEALNNIRTVRAFSSEMEEHRKYKEACDEALNNGIKDAWAGAGTYAFTQYMELSISVLLLWYGGSVAMEDNYFLTIGKLITFQLYWNMLRNSYNTIVENVNS 175 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig10622.404.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig10622.404.1 >prot_H-paniculata_contig10622.404.1 ID=prot_H-paniculata_contig10622.404.1|Name=mRNA_H-paniculata_contig10622.404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=169bp MLGTLLSNAMLLVGGVVMCFVTSWRLSMLAFTTVGPIYHITQVYAKWSQQback to top mRNA from alignment at H-paniculata_contig10622:281..6892- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig10622.404.1 ID=mRNA_H-paniculata_contig10622.404.1|Name=mRNA_H-paniculata_contig10622.404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6612bp|location=Sequence derived from alignment at H-paniculata_contig10622:281..6892- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig10622:281..6892- >mRNA_H-paniculata_contig10622.404.1 ID=mRNA_H-paniculata_contig10622.404.1|Name=mRNA_H-paniculata_contig10622.404.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at H-paniculata_contig10622:281..6892- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |