mRNA_H-paniculata_contig17252.4040.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE) HSP 1 Score: 149 bits (377), Expect = 5.760e-38 Identity = 78/160 (48.75%), Postives = 103/160 (64.38%), Query Frame = 3
Query: 6 GARSSKYVKKEFKDYCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIG-VGP---TFCG--------VIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKTPS 449
G + ++Y EF++YCLQ+G LEYAS NTP QIG +ER GR L AMVRC+ DSGLP+FL LM T + S R PH A+G + P +C IGA AF+H+ET ++L+ K+ EG + GYS +SKS + NP T + ESRNV F++TPS
Sbjct: 334 GDKEAEYTCLEFREYCLQIGVKLEYASTNTPQQIGANERAGRTLAAMVRCLLTDSGLPKFLWGGLMQTAVYLSNRVPHAALGNITPYKALYCKDANLGHLRAIGARAFVHVETHTRELDPKAWEGCLCGYSMDSKSFHIYNPETGNVRESRNVIFVETPS 493
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 149 bits (376), Expect = 6.450e-37 Identity = 92/222 (41.44%), Postives = 125/222 (56.31%), Query Frame = 3
Query: 12 RSSKYVKKEFKDYCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPTFCG------------VIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKT-PSPPFPPQSG--EVPMNL*GHGQAGKDQGHNYITDD-----SFLHILCGYNSVLDLLPGTSPDYT 617
+ +++ ++ YCL VG L++AS NTPHQIG +ER GR ++ +VRCM ADS LP L ELM T + S R PH A+ G + V+GA AF+H ET KKL+ ++ EGR+VGYS +SKS R+ N TRR+ ESRNV FI+T P+PP + G + H +D NY T+ S H + G SVL+L+ T P T
Sbjct: 932 KGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAPPSLDERGFDDGEFTYADHDDMIRDV-RNYTTNHPVDALSPTHAV-GDPSVLELIEDTPPSTT 1151
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 146 bits (369), Expect = 5.130e-36 Identity = 91/218 (41.74%), Postives = 123/218 (56.42%), Query Frame = 3
Query: 12 RSSKYVKKEFKDYCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPTFCG------------VIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKT-PSPPFPPQSG--EVPMNL*GHGQAGKDQGHNYITDDSF-----LHILCGYNSVLDLLPGTS 605
+ +++ ++ YCL VG L++AS NTPHQIG +ER GR ++ +VRCM ADS LP L ELM T + S R PH A+ G + V+GA AF+H ET KKL+ ++ EGR+VGYS +SKS R+ N TRR+ ESRNV FI+T P+PP + G + H +D NY T+ S H + G SVL+LL S
Sbjct: 703 KGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETTPAPPSLDERGFDDGEFTYADHDDMIRDV-RNYTTNHSVDALSPTHAV-GDPSVLELLEDIS 918
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE) HSP 1 Score: 146 bits (369), Expect = 5.150e-36 Identity = 91/218 (41.74%), Postives = 123/218 (56.42%), Query Frame = 3
Query: 12 RSSKYVKKEFKDYCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPTFCG------------VIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKT-PSPPFPPQSG--EVPMNL*GHGQAGKDQGHNYITDDSF-----LHILCGYNSVLDLLPGTS 605
+ +++ ++ YCL VG L++AS NTPHQIG +ER GR ++ +VRCM ADS LP L ELM T + S R PH A+ G + V+GA AF+H ET KKL+ ++ EGR+VGYS +SKS R+ N TRR+ ESRNV FI+T P+PP + G + H +D NY T+ S H + G SVL+LL S
Sbjct: 609 KGAEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNGTPYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRAWEGRLVGYSLDSKSYRIYNAQTRRVRESRNVIFIETNPAPPSLDERGFDDGEFTYADHDDMIRDV-RNYTTNHSVDALSPTHAV-GDPSVLELLEDIS 824
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE) HSP 1 Score: 143 bits (361), Expect = 5.270e-35 Identity = 87/221 (39.37%), Postives = 119/221 (53.85%), Query Frame = 3
Query: 6 GARSSKYVKKEFKDYCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPTFCG------------VIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKTPSPPFPPQSGEVPMNL*GHGQAGKDQGHNYITDDSFLHILCGY--NSVLDLLPGTSPDYTTMD 626
G + +++ EF+ YC +G LE+AS N P QIG +ER GR ++ +VRC+ ADS LP FL EL+ T + S R PH A+ G + VIG+ AF+H ET +KLE ++ EGR+VGYS +SKS R+ N TRR+ SRNV FI+TP P P E + D+ Y T D + + Y N +D LP PD+ D
Sbjct: 171 GDQGTEFTSAEFRQYCQDIGIKLEFASPNIPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRVSRNVVFIETP--PVAPALDEFGFD---------DREFTYDTHDDMVRDVRNYTFNHSIDSLP---PDHDVGD 377
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE) HSP 1 Score: 138 bits (348), Expect = 3.100e-33 Identity = 73/161 (45.34%), Postives = 99/161 (61.49%), Query Frame = 3
Query: 12 RSSKYVKKEFKDYCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPTFCG------------VIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKT-PSPP 455
+ +++ ++ YCL VG L++AS NTPHQIG +ER GR ++ +VRCM ADS LP L ELM T + S R PH A+ + V+GA AF+H ET KKL+ ++ EGR+VGYS +SKS R+ N T R+ ESRN FI+T P+PP
Sbjct: 148 KGTEFTNAAYRQYCLDVGIQLQFASPNTPHQIGANERAGRTIMNIVRCMLADSTLPSLLWGELMQTAVYLSNRTPHAALHNXXXYKALFGTDAHLGHLRVVGARAFVHEETHTKKLDSRACEGRLVGYSLDSKSYRIYNAQTTRVRESRNDIFIETTPAPP 308
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5JC75_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC75_9PHAE) HSP 1 Score: 127 bits (318), Expect = 3.090e-29 Identity = 70/166 (42.17%), Postives = 95/166 (57.23%), Query Frame = 3
Query: 6 GARSSKYVKKEFKDYC-------LQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPTFCG------------VIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKTP 446
G + +++ EF+ YC + LE+AS NTP QIG + R GR ++ +VRC+ ADS LP FL EL+ T + S R PH A+ G + VIG+ AF+H T +KLE ++ EGR+VGYS SKS R+ N TRR+ SRNV FI+TP
Sbjct: 715 GDQGTEFTSAEFRQYCQNISIKLXNISIKLEFASPNTPQQIGANARAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEATHTRKLEHRAWEGRLVGYSTVSKSYRIYNSETRRVRVSRNVVFIETP 880
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE) HSP 1 Score: 127 bits (318), Expect = 3.100e-29 Identity = 65/149 (43.62%), Postives = 91/149 (61.07%), Query Frame = 3
Query: 6 GARSSKYVKKEFKDYCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPTFCG------------VIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIME 416
G + +++ EF+ YC +G LE+AS NTP QIG +ER GR ++ +VRC+ ADS LP FL EL+ T + S R PH A+ G + VIG+ AF+H ET +KLE ++ EGR+VGYS +SKS R+ N TRR+ +
Sbjct: 596 GDQGTEFTSAEFRQYCQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNGTPYKALYGKDAYLGHLRVIGSRAFVHEETHTRKLEHRAWEGRLVGYSMDSKSYRIYNSETRRVRD 744
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5JRS9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRS9_9PHAE) HSP 1 Score: 120 bits (302), Expect = 4.350e-27 Identity = 65/163 (39.88%), Postives = 93/163 (57.06%), Query Frame = 3
Query: 12 RSSKYVKKEFKDYCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIG-VGPTF-----------CGVIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKTPSPPFPP 464
R + V F YC+ G ++EYA+ NTP Q G+S R G+ L + RC+ D P L ELM+T S R+PH +G V P F VIGA +F++ E KKL ++ EG++ G+S +SK+ R+ NP T ++ESRNV+FI+TP+ PP
Sbjct: 1054 RGGENVANIFTAYCMDSGITIEYAATNTPQQNGVSGRDGQTLTTITRCLMEDGAFPPTLWGELMMTAVDLSNRSPHSVLGGVTPYFKMYGKEADLSRLRVIGARSFVNYERYTKKLSDRTFEGKLCGFSRDSKTYRIYNPATGNVVESRNVTFIETPAYSMPP 1216
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Match: A0A6H5KB94_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB94_9PHAE) HSP 1 Score: 120 bits (301), Expect = 5.580e-27 Identity = 65/133 (48.87%), Postives = 84/133 (63.16%), Query Frame = 3
Query: 48 YCLQVGFSLEYASANTPHQIGMSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPTFCGVIGASAFLHIETCIKKLELKSIEGRVVGYSDNSKSDRVCNPVTRRIMESRNVSFIKTP 446
YC +G LE+AS NTP QIG +ER GR ++ +VRC+ ADS LP FL EL+ T + S R PH A+ G T C + ET +KLE ++ EGR+VGYS SKS ++ N TRR+ SRNV FI+TP
Sbjct: 558 YCQDIGIKLEFASPNTPQQIGANERAGRTILNVVRCLLADSTLPNFLWGELIQTAVYLSNRVPHAALQNG-TPCKEL-------YETHTRKLEYRAWEGRLVGYSMGSKSYQIYNSETRRVRVSRNVVFIETP 682 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17252.4040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17252.4040.1 >prot_H-paniculata_contig17252.4040.1 ID=prot_H-paniculata_contig17252.4040.1|Name=mRNA_H-paniculata_contig17252.4040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp MSERVGRALVAMVRCMFADSGLPEFLGEELMLTVAFQSKRAPHFAIGVGPback to top mRNA from alignment at H-paniculata_contig17252:402..1238+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17252.4040.1 ID=mRNA_H-paniculata_contig17252.4040.1|Name=mRNA_H-paniculata_contig17252.4040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=837bp|location=Sequence derived from alignment at H-paniculata_contig17252:402..1238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17252:402..1238+ >mRNA_H-paniculata_contig17252.4040.1 ID=mRNA_H-paniculata_contig17252.4040.1|Name=mRNA_H-paniculata_contig17252.4040.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig17252:402..1238+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |