mRNA_H-paniculata_contig1725.4038.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1725.4038.1 vs. uniprot
Match: D7G7R3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7R3_ECTSI) HSP 1 Score: 229 bits (583), Expect = 1.110e-62 Identity = 171/428 (39.95%), Postives = 223/428 (52.10%), Query Frame = 2
Query: 890 PGSLSVGAQNSTNGIFVNNIRVLESNLQNGDIVQFGGAAGVPVGTVFAGDFCHIRYRFV-EVAAVPLPASRKRR--NPDSASKDPPKVXXXXXXXXXXXXXXXXXHSGPRKASGQIPPSNPAVVTQESDAKRDLARSDTTDAVETLRSMSNNSICVLNNGSG-ARKGRGK----------------------NPASNTVKDVLGDAMCGLCSEVLLDAAVLPCSHCFCRLCWIEHAQKGDSKCPVCLRKFHSSERG-RRCSNLDLVITSLIQKLAGVETRERWAKRQQDAKAREEQLTAKHAAGNVGLGMTSNSWSPSLFKNGRSPNLATPRSHDTPSGRGVHIT---ADANGLNPVE-TCIFERSANGGVTSRQNARGTSGGRSGEDASSSQRQEKTVLMCEGCNEEGHEFRQCPHRSDSAVENSNE 2080
P + ++ STNG+FVN +V E L++GD+VQFGGAA +PVGT F G IRYRF ++A P S++RR NPD+ + + PK+ R+DT DA +TLR++SN S G AR G G + V +VL DAMCGLCSE+LLDAAVLPCSH FCRLCW EH ++ + CPVCLRK HSSER RRCSNLDL+ITS+I KLAG E R RW RQ++A+ R K G + +P K G+ P+ A S +P+ RGV T ++ NG+ P E + + + GG T R G +GG + +++ R CEGC+EEGHEFR+CPHRSDSA+E S E
Sbjct: 67 PKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSRIRYRFEHKLAGSPNTNSKRRRGSNPDAPATNRPKI----------------------------------------------VRADTLDAADTLRAISNGSSVTRGIGPDKARAGGGXXXXXXXXXXXXXXXXXXXXXXGGETPSMVMEVLRDAMCGLCSELLLDAAVLPCSHSFCRLCWAEHVEEKGTTCPVCLRKMHSSERTPRRCSNLDLLITSIIHKLAGPEERARWTARQEEAQKRAAVAARKARQ----QGSNNGPAAPGTRKAGQVPSSAA-ESKPSPA-RGVRSTGSKSNNNGVFPPERSSRGDGNQGGGSTKRLAPSGIAGGGANSSVAAAAR-------CEGCDEEGHEFRECPHRSDSALEGSEE 435
BLAST of mRNA_H-paniculata_contig1725.4038.1 vs. uniprot
Match: A0A6H5KYS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS2_9PHAE) HSP 1 Score: 207 bits (527), Expect = 7.730e-55 Identity = 162/425 (38.12%), Postives = 212/425 (49.88%), Query Frame = 2
Query: 890 PGSLSVGAQNSTNGIFVNNIRVLESNLQNGDIVQFGGAAGVPVGTVFAGDFCHIRYRFVEVAAVPLPASRKRR--NPDSASKDPPKVXXXXXXXXXXXXXXXXXHSGPRKASGQIPPSNPAVVTQESDAKRDLARSDTTDAVETLRSMSNNSICVLNNGSG-ARKGRGKNP----------------------ASNTVKDVLGDAMCGLCSEVLLDAAVLPCSHCFCRLCWIEHAQKGDSKCPVCLRKFHSSERG-RRCSNLDLVITSLIQKLAGVETRERWAKRQQDAKAREEQLTAKHAAGNVGLGMTSNSWSPSLFKNGRSPNLATPRSHDTPSGRGVHIT---ADANGLNPVE-TCIFERSANGGVTSRQNARGTSGGRSGEDASSSQRQEKTVLMCEGCNEEGHEFRQCPHRSDSAVENS 2074
P + ++ STNG+FVN +V E L++GD+VQFGGAA +PVGT F G IR A P P S++RR NPD+ + + PK+ R+DT DA +TLR++ N S G AR G G + + V +VL DAMCGLCSE+LLDAAVLPCSH FCRLCW H ++ + CPVCLRK HSSER RRCSNLDL+ITS+I KLAG + R RW RQ++A R K G + + K G+ P+ A S +P+ RGV T ++ NG+ P E T + + G R GT+ G ++ +R CEGC+EEGHEFR+CPHRSDSA++ S
Sbjct: 82 PKTYTLRDLGSTNGVFVNEFKVQEQRLRHGDVVQFGGAADIPVGTRFGGTGSRIRCS----ARSPTPNSKRRRGPNPDAPATNRPKI----------------------------------------------VRADTLDAADTLRAIGNGSSVTRRIGPDKARAGGGGDXXXXXXXXXXXXXXXXVDSGGGETPSMVMEVLRDAMCGLCSELLLDAAVLPCSHSFCRLCWAGHVEEKGTTCPVCLRKMHSSERTPRRCSNLDLLITSIIHKLAGPQERARWTARQEEALKRATAAARKARQ----QGSNNGPAAAGTRKAGQVPSSAA-ESKPSPA-RGVRSTGSKSNNNGVFPPEGTSRGDGNLGGTGIKRLAPSGTADGNGNSTVAAPER-------CEGCDEEGHEFRECPHRSDSALDES 443
BLAST of mRNA_H-paniculata_contig1725.4038.1 vs. uniprot
Match: A0A836C894_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C894_9STRA) HSP 1 Score: 119 bits (297), Expect = 3.940e-24 Identity = 140/490 (28.57%), Postives = 196/490 (40.00%), Query Frame = 2
Query: 917 NSTNGIFVNNIRVLESNLQNGDIVQFGGAAGVPVGTVFAGDFCHIRYRFVEVAAVPLP----------ASRKRRNPDSASKDPPKVXXXXXXXXXXXXXXXXXHS--------------------GPRKASGQIPPSNPAVVTQESDAKRD-----------------------LARSDT-TDAVETLRSMSNNSICVLN-NGSGARKGRGKNPASNTVK-------------------------------DVLGDAMCGLCSEVLLDAAVLPCSHCFCRLCWIEHAQKGDSKCPVCLRKFHSSER-GRRCSNLDLVITSLIQKLAGVETRERWAKRQQDAKAREEQLTAKHAAGNVGLGMTSNSWSPSLFKNGRSPNLATPRSHDTP---SGRGVHITADANGLNPV----------ETCIFERSANGGVTSRQNARGTSGGRSGEDASSSQRQEKTVLMCEGCNEEGHEFRQCPHRSDSAVENSNEES 2086
NS NG+FVN+I+V + L +GDIVQ GGAA +PVG F G+ I+YRF +AA P ++++R P S S+ P +V HS G ++ +P + PAV TQ+S+A++ +A +D + +T + + + ++ G A K P + +L + C LC E LLDAA+LPCSH C CW H + CPVC RKFHS+ER RR +LD VI L+ +L G E + R +R Q A SP S +P SGRG ADA L+PV + + + T ++ A S G G+ SQ +E +CEGCNE GH+ CPHRSD A + S+EES
Sbjct: 93 NSVNGVFVNDIKVHSNELFDGDIVQLGGAAMMPVGARFFGNRAAIQYRFSTIAAPPXXXXXXXXXXANGAKRKRAPMSGSQSP-EVTGHSSLHELSASRRKTSHSSSDGLPWEPVGAKEADTGDDGAPGSTEPLPQATPAV-TQQSEAQQRAREQQLAMELAAKTAEVAQLQALVAEADARARSAQTAQQNAEAAFTMMKLAGDRASPPPPKQPQLRDAQVQTAVCDSAXXXXXXXXXXXXXXXLKHRLASQLLAEVACCLCEETLLDAALLPCSHAVCGACWTAHCDAHSTACPVCTRKFHSAERRARRSMHLDNVIALLVAELGGAEAQRRMEERAQAAXXXXXXXXXXXXXXXXXXXX--------XXXXPTSPAXXXXXSRISPPGSSGRG----ADAGKLSPVGSGRKSLSQQQQRLLPVAPLNAFTRKRAALARSAGAGGD----SQPRE---AVCEGCNEPGHDMSCCPHRSDDAFKESDEES 561 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1725.4038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1725.4038.1 >prot_H-paniculata_contig1725.4038.1 ID=prot_H-paniculata_contig1725.4038.1|Name=mRNA_H-paniculata_contig1725.4038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp MSNNSICVLNNGSGARKGRGKNPASNTVKDVLGDAMCGLCSEVLLDAAVLback to top mRNA from alignment at H-paniculata_contig1725:956..4852- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1725.4038.1 ID=mRNA_H-paniculata_contig1725.4038.1|Name=mRNA_H-paniculata_contig1725.4038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3897bp|location=Sequence derived from alignment at H-paniculata_contig1725:956..4852- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1725:956..4852- >mRNA_H-paniculata_contig1725.4038.1 ID=mRNA_H-paniculata_contig1725.4038.1|Name=mRNA_H-paniculata_contig1725.4038.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig1725:956..4852- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |