mRNA_H-paniculata_contig1724.4033.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1724.4033.1
Unique NamemRNA_H-paniculata_contig1724.4033.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1724.4033.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.280e-24
Identity = 51/89 (57.30%), Postives = 67/89 (75.28%), Query Frame = 1 
Query:   16 DVVGHLVQFVDRERYLFFAGVSWCWRIAWGNRPTFTRAVTFDTSISQLQCSFDCGLRRGASLCNAVAEIGKLELLHCARANGCPWSKDT 282
            D+V  + +FVD  +YLFFA VS  WR  WG RPT T+A+T DTS+SQL  SF+CGLRR A++C  VA +G+L+LL  ARA GCPW+++T
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNENT 98
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BLAST of mRNA_H-paniculata_contig1724.4033.1 vs. uniprot
Match: D7G8V2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8V2_ECTSI)

HSP 1 Score: 107 bits (267), Expect = 3.900e-22
Identity = 49/94 (52.13%), Postives = 67/94 (71.28%), Query Frame = 1 
Query:    1 LAINNDVVGHLVQFVDRERYLFFAGVSWCWRIAWGNRPTFTRAVTFDTSISQLQCSFDCGLRRGASLCNAVAEIGKLELLHCARANGCPWSKDT 282
            L   +DV   LV+FVD E++LFFAGV   W+ AWG RP  TRAVT DT+++QL  +F CGL   A +C +VA++G+L+LL CAR +GC W++ T
Sbjct:    5 LFAQSDVASCLVEFVDYEQFLFFAGVCRAWKEAWGQRPPTTRAVTEDTTVAQLSQNFQCGLSLIADVCTSVAKLGRLDLLQCARRHGCAWNEVT 98
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BLAST of mRNA_H-paniculata_contig1724.4033.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 9.790e-21
Identity = 52/96 (54.17%), Postives = 65/96 (67.71%), Query Frame = 1 
Query:   16 DVVGHLVQFVDRERYLFFAGVSWCWRIAWGNRPTFTRAVTFDTSISQLQCSFDCGLRRGAS-LCNAVAEIGKLELLHCARANGCPWSKDTTCWGAA 300
            DV+ H  +FV  +++LFFA VS  WR AW  RPT TRA+T DTS SQL+ S DCGL  G + +C A+A +G+L+LL  ARA G  W K  TCW AA
Sbjct:   10 DVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDK-MTCWKAA 104
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BLAST of mRNA_H-paniculata_contig1724.4033.1 vs. uniprot
Match: D7FH78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH78_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 8.660e-14
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = 1 
Query:   10 NNDVVGHLVQFVDRERYLFFAGVSWCWRIAWGNRPTFTRAVTFDTSISQLQCSFDCGLRRGAS-LCNAVAEIGKLELLHCARANGCP 267
            N +++  L QFV   ++LFFA V+  WR AW  RPT T  VT DT+ SQLQ SF+CGL +  + LC A+A +GKL LL CA   GCP
Sbjct:  112 NRNILLCLAQFVPDNQFLFFAPVAKGWRAAW-QRPTITAHVTPDTTTSQLQHSFECGLPQNQTGLCAALARLGKLNLLACAVGAGCP 197
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BLAST of mRNA_H-paniculata_contig1724.4033.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 4.280e-12
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1 
Query:   28 HLVQFVDRERYLFFAGVSWCWRIAWGNRPTFTRAVTFDTSISQLQCSFDCGLR---RGASLCNAVAEIGKLELLHCARANGCPWSKDT 282
            +L +FVD+++YLF A VS  +R AWG R T TR V  DTS+ QL    + GL    R A++CNA A  G+L+LL  A+ + C W+  T
Sbjct:    3 YLAEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQESACGWTPAT 90
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BLAST of mRNA_H-paniculata_contig1724.4033.1 vs. uniprot
Match: A0A6H5K3L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 4.410e-11
Identity = 38/88 (43.18%), Postives = 53/88 (60.23%), Query Frame = 1 
Query:   28 HLVQFVDRERYLFFAGVSWCWRIAWGNRPTFTRAVTFDTSISQLQCSFDCGLR---RGASLCNAVAEIGKLELLHCARANGCPWSKDT 282
            +  +FVD+++YLF A V   +R AWG R T TR V  DTS+ QL    + GL    R A++CNA A  G+L+LL  A+ + C W+  T
Sbjct:    3 YFAEFVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQGSACGWTPAT 90
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1724.4033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FMS7_ECTSI1.280e-2457.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8V2_ECTSI3.900e-2252.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDD9_ECTSI9.790e-2154.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FH78_ECTSI8.660e-1451.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G822_ECTSI4.280e-1245.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3L5_9PHAE4.410e-1143.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1724contigH-paniculata_contig1724:16826..18103 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue2.6e-14
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Exons2
Model size1119
Cds size1119
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929359.6722493-CDS-H-paniculata_contig1724:16825..176631622929359.6722493-CDS-H-paniculata_contig1724:16825..17663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1724 16826..17663 -
1691480829.767295-CDS-H-paniculata_contig1724:16825..176631691480829.767295-CDS-H-paniculata_contig1724:16825..17663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1724 16826..17663 -
1622929359.6911833-CDS-H-paniculata_contig1724:17822..181031622929359.6911833-CDS-H-paniculata_contig1724:17822..18103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1724 17823..18103 -
1691480829.7773368-CDS-H-paniculata_contig1724:17822..181031691480829.7773368-CDS-H-paniculata_contig1724:17822..18103Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1724 17823..18103 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1724.4033.1prot_H-paniculata_contig1724.4033.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1724 16826..18103 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1724.4033.1

>prot_H-paniculata_contig1724.4033.1 ID=prot_H-paniculata_contig1724.4033.1|Name=mRNA_H-paniculata_contig1724.4033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=373bp
LAINNDVVGHLVQFVDRERYLFFAGVSWCWRIAWGNRPTFTRAVTFDTSI
SQLQCSFDCGLRRGASLCNAVAEIGKLELLHCARANGCPWSKDTTCWGAA
TNGRLDVLEWVRENGCPWDERTCSAAAEKGHLDVLEYARENGCPWSGHTC
GGAARGGHLHVLRWARANGCEWSSHICRLAAEGGHLDVLHWARENGCLWG
EDTCAAAASRGHVRLLQWCWTNGCPWNETTCNAAAHFGHLDVLHYARANG
CPWSAATCMIAARAGQLSVLVFAKENGCPWDHLTCANAAAGGHFEILHWA
RWNGCPWNELTCGSAAEEGRLEILQWVRENGCPWDASTCSAAAGGGHLHI
LEWARANGCPWDEKTCSRAAGGG
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mRNA from alignment at H-paniculata_contig1724:16826..18103-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1724.4033.1 ID=mRNA_H-paniculata_contig1724.4033.1|Name=mRNA_H-paniculata_contig1724.4033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1278bp|location=Sequence derived from alignment at H-paniculata_contig1724:16826..18103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCGATCAATAATGACGTCGTTGGCCACCTGGTGCAGTTCGTGGACAG
GGAGCGATACCTGTTCTTCGCCGGTGTCTCCTGGTGCTGGCGCATAGCTT
GGGGCAATCGCCCCACTTTTACCCGCGCCGTGACGTTTGATACATCGATA
TCACAGCTTCAGTGTAGCTTTGACTGCGGCCTCCGCCGTGGGGCTTCCCT
GTGCAACGCCGTGGCAGAAATCGGAAAACTAGAGCTTCTACACTGTGCGC
GTGCAAACGGCTGCCCCTGGTCCAAAGATACGTGCAGAGCGGCCGGAGCG
CAAGGTCATATCTCAATGTTAAGGTGGGCGCGAGAACGAGGTTGTCCGTG
GGACGCCGATACATGCGCTGGGACAGCGTTTGCAGGACAGCTCGAGGCTC
TTCAGTGGATGAGAGCAAATGGTTGTCCCTGGGATGCAAGCACGTGTTGG
GGGGCTGCCACGAATGGACGCTTGGACGTGCTTGAGTGGGTAAGGGAGAA
CGGGTGTCCATGGGACGAGCGCACGTGTAGTGCGGCCGCCGAAAAAGGGC
ATTTAGATGTGCTCGAGTATGCGCGAGAAAACGGTTGTCCGTGGAGTGGT
CACACGTGTGGAGGAGCTGCCCGCGGCGGCCACCTGCATGTTCTCCGCTG
GGCAAGGGCAAACGGGTGCGAGTGGAGCAGCCATATCTGCCGTCTGGCCG
CAGAGGGCGGACACCTAGATGTTCTGCATTGGGCAAGGGAGAATGGTTGC
CTGTGGGGAGAGGACACGTGTGCAGCGGCGGCTTCACGAGGACACGTCCG
ATTGCTGCAGTGGTGCTGGACGAACGGGTGCCCTTGGAACGAAACTACGT
GCAACGCGGCCGCCCACTTCGGCCATCTCGATGTGTTACATTACGCCCGC
GCAAACGGCTGCCCTTGGAGCGCAGCTACTTGCATGATTGCGGCGCGGGC
GGGGCAGCTGTCCGTTTTGGTATTCGCTAAAGAAAATGGCTGCCCCTGGG
ACCACTTGACCTGCGCTAATGCCGCTGCTGGGGGTCATTTTGAGATCCTC
CACTGGGCAAGGTGGAACGGGTGTCCTTGGAATGAGCTCACCTGCGGCTC
TGCGGCGGAGGAAGGACGTTTGGAGATTCTCCAATGGGTGCGGGAGAATG
GCTGCCCATGGGATGCAAGTACATGCAGTGCCGCCGCCGGTGGGGGGCAT
CTACATATTCTTGAATGGGCGAGGGCAAACGGGTGTCCGTGGGACGAAAA
AACCTGCAGCCGGGCGGCGGGGGGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig1724:16826..18103-

>mRNA_H-paniculata_contig1724.4033.1 ID=mRNA_H-paniculata_contig1724.4033.1|Name=mRNA_H-paniculata_contig1724.4033.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2238bp|location=Sequence derived from alignment at H-paniculata_contig1724:16826..18103- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTGGCGATCAATAATGACGTCGTTGGCCACCTGGTGCAGTTCGTGGACAG
GGAGCGATACCTGTTCTTCGCCGGTGTCTCCTGGTGCTGGCGCATAGCTT
GGGGCAATCGCCCCACTTTTACCCGCGCCGTGACGTTTGATACATCGATA
TCACAGCTTCAGTGTAGCTTTGACTGCGGCCTCCGCCGTGGGGCTTCCCT
GTGCAACGCCGTGGCAGAAATCGGAAAACTAGAGCTTCTACACTGTGCGC
GTGCAAACGGCTGCCCCTGGTCCAAAGATACTTGGCGATCAATAATGACG
TCGTTGGCCACCTGGTGCAGTTCGTGGACAGGGAGCGATACCTGTTCTTC
GCCGGTGTCTCCTGGTGCTGGCGCATAGCTTGGGGCAATCGCCCCACTTT
TACCCGCGCCGTGACGTTTGATACATCGATATCACAGCTTCAGTGTAGCT
TTGACTGCGGCCTCCGCCGTGGGGCTTCCCTGTGCAACGCCGTGGCAGAA
ATCGGAAAACTAGAGCTTCTACACTGTGCGCGTGCAAACGGCTGCCCCTG
GTCCAAAGATACCACGTGTTGGGGGGCTGCCACGAATGGACGCTTGGACG
TGCTTGAGTGGGTAAGGGAGAACGGGTGTCCATGGGACGAGCGCACGTGT
AGTGCGGCCGCCGAAAAAGGGCATTTAGATGTGCTCGAGTATGCGCGAGA
AAACGGTTGTCCGTGGAGTGGTCACACGTGTGGAGGAGCTGCCCGCGGCG
GCCACCTGCATGTTCTCCGCTGGGCAAGGGCAAACGGGTGCGAGTGGAGC
AGCCATATCTGCCGTCTGGCCGCAGAGGGCGGACACCTAGATGTTCTGCA
TTGGGCAAGGGAGAATGGTTGCCTGTGGGGAGAGGACACGTGTGCAGCGG
CGGCTTCACGAGGACACGTCCGATTGCTGCAGTGGTGCTGGACGAACGGG
TGCCCTTGGAACGAAACTACGTGCAACGCGGCCGCCCACTTCGGCCATCT
CGATGTGTTACATTACGCCCGCGCAAACGGCTGCCCTTGGAGCGCAGCTA
CTTGCATGATTGCGGCGCGGGCGGGGCAGCTGTCCGTTTTGGTATTCGCT
AAAGAAAATGGCTGCCCCTGGGACCACTTGACCTGCGCTAATGCCGCTGC
TGGGGGTCATTTTGAGATCCTCCACTGGGCAAGGTGGAACGGGTGTCCTT
GGAATGAGCTCACCTGCGGCTCTGCGGCGGAGGAAGGACGTTTGGAGATT
CTCCAATGGGTGCGGGAGAATGGCTGCCCATGGGATGCAAGTACATGCAG
TGCCGCCGCCGGTGGGGGGCATCTACATATTCTTGAATGGGCGAGGGCAA
ACGGGTGTCCGTGGGACGAAAAAACCTGCAGCCGGGCGGCGGGGGGCGGG
CACGTGTTGGGGGGCTGCCACGAATGGACGCTTGGACGTGCTTGAGTGGG
TAAGGGAGAACGGGTGTCCATGGGACGAGCGCACGTGTAGTGCGGCCGCC
GAAAAAGGGCATTTAGATGTGCTCGAGTATGCGCGAGAAAACGGTTGTCC
GTGGAGTGGTCACACGTGTGGAGGAGCTGCCCGCGGCGGCCACCTGCATG
TTCTCCGCTGGGCAAGGGCAAACGGGTGCGAGTGGAGCAGCCATATCTGC
CGTCTGGCCGCAGAGGGCGGACACCTAGATGTTCTGCATTGGGCAAGGGA
GAATGGTTGCCTGTGGGGAGAGGACACGTGTGCAGCGGCGGCTTCACGAG
GACACGTCCGATTGCTGCAGTGGTGCTGGACGAACGGGTGCCCTTGGAAC
GAAACTACGTGCAACGCGGCCGCCCACTTCGGCCATCTCGATGTGTTACA
TTACGCCCGCGCAAACGGCTGCCCTTGGAGCGCAGCTACTTGCATGATTG
CGGCGCGGGCGGGGCAGCTGTCCGTTTTGGTATTCGCTAAAGAAAATGGC
TGCCCCTGGGACCACTTGACCTGCGCTAATGCCGCTGCTGGGGGTCATTT
TGAGATCCTCCACTGGGCAAGGTGGAACGGGTGTCCTTGGAATGAGCTCA
CCTGCGGCTCTGCGGCGGAGGAAGGACGTTTGGAGATTCTCCAATGGGTG
CGGGAGAATGGCTGCCCATGGGATGCAAGTACATGCAGTGCCGCCGCCGG
TGGGGGGCATCTACATATTCTTGAATGGGCGAGGGCAAACGGGTGTCCGT
GGGACGAAAAAACCTGCAGCCGGGCGGCGGGGGGCGGG
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