mRNA_H-paniculata_contig1723.4030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1723.4030.1
Unique NamemRNA_H-paniculata_contig1723.4030.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: D7FRD4_ECTSI (Retinitis pigmentosa 2 (X-linked recessive) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD4_ECTSI)

HSP 1 Score: 399 bits (1026), Expect = 8.280e-135
Identity = 249/381 (65.35%), Postives = 278/381 (72.97%), Query Frame = 1
Query:   10 LDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGGR-GDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDAALALLVAAGAATXXXXXXX----------------------TAEEGAG-----------KGKGGGLNYFMAGDSVESTLKAKTFFEQWDEDKSTSL 1050
            L+P DFI S KQKEV+V+EPGSIGGQQFIVEECS+C+ YLLDHTAALTID+ XXXXXXX   XXXXXXXXXXXXTVVVACQQFRARD    TFFLFSATQPVIESS  L+F CYTLDYFSLAGQFAA  LSVWNN+WSQI NFTGG  GDWSCLP GSHHRDF  RSLP+ +R RVGYTENT+GAVVP+TAG+R     EETCF+VVMP HIDAVLGKLLA  G  G  S      SRLLRTK+  PQ+AQSK FF G+P  M+ LASS P+LG+QWAGPGS +AA++LL AAG   XXXXXXX                      +A+ GAG           +G GGG +   +G S  S  KA+ FFEQWDEDK T L
Sbjct:   39 LNPSDFIFSCKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCXXXXXXXGPCXXXXXXXXXXXXTVVVACQQFRARDXXXXTFFLFSATQPVIESSVGLRFGCYTLDYFSLAGQFAAAKLSVWNNRWSQIHNFTGGGDGDWSCLPEGSHHRDFTTRSLPEASRQRVGYTENTHGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGG--GGDSPISATTSRLLRTKLFRPQMAQSKTFFSGAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSADIGAGNGTSEYYMVAGRGDGGGNDDGRSG-SESSAAKARVFFEQWDEDKGTPL 416          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A6U2EBU0_HEMAN (Protein XRP2 n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2EBU0_HEMAN)

HSP 1 Score: 176 bits (446), Expect = 9.540e-48
Identity = 137/348 (39.37%), Postives = 190/348 (54.60%), Query Frame = 1
Query:    1 KVKLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGGRGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNG--AVVPLTAGIRDLKI-DEETCFVVVMPAHID---AVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDAALALLVAAGAATXXXXXXXTAEEGAGKGKGGGLNYFMAGDSVESTLKAKTFFEQW 1026
            K K DPKDF+ S  + +V +K PG+I GQ FIVE+C DCD Y+ D+TA + +D XXXXXXXXXXXXXXXXXXXXXXX  + ACQQ R R+C NC F L+ +T PVIE S N++F C+   YFSLA QF A  LSV++NKWS++++FT G+ +WS LP  +   D I+              E  +G  +VVP+TAG+R      +E  FV+++P+      A+  KL              P    L++TK L    A+ K   E       T ++    +G++ AG G+   AL  + AAG                     G    + +GD+  ++ +   FFEQW
Sbjct:  106 KKKPDPKDFMFSNLKNQVCIKPPGAINGQMFIVEDCEDCDIYVCDNTAQVQVDYXXXXXXXXXXXXXXXXXXXXXXXXCIFACQQLRTRECVNCDFLLYVSTAPVIEESKNMRFGCFRFFYFSLAQQFEAAKLSVYDNKWSEVYDFTPGKDNWSFLPLNTKASDLIKPLSAHPGSFSTAEEEAAHGDDSVVPVTAGLRKGDFAGKERSFVLLLPSKAPEGPALFSKL--------------PESCTLIQTKQLQLDAAKVKTLLEKCSDSTVTGSAKGMCVGVEVAGDGALAGALKAVEAAG---------------------GSAVAYASGDADAASFELNVFFEQW 418          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A813IEF2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IEF2_POLGL)

HSP 1 Score: 159 bits (403), Expect = 4.130e-43
Identity = 111/229 (48.47%), Postives = 147/229 (64.19%), Query Frame = 1
Query:    7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGG--RGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMP---AHIDAVLGKLLATVG 678
            KL+P D+IIS K  E ++KE G+I G+QF +EEC DCD +LLD+ A   ID XXXXXXXXXXXXXXXXXXXXXXX+ +VACQQFR RDC++C   L   T+P+IE+S N++FAC+  +YFSL GQ     L +WNNKWSQ+++F       +WS LP     +    +++  +    V   E  N   VP+T G R  +   E+CFVV +P   A ++A L K   T G
Sbjct:   42 KLNPADYIISKKIGETVIKEEGTIAGEQFNIEECKDCDIFLLDYIATAFIDXXXXXXXXXXXXXXXXXXXXXXXXSFIVACQQFRCRDCTDCNLALLCTTEPIIETSENMKFACFDFNYFSLRGQLNQAGLKLWNNKWSQVYDFNKNSTNPNWSLLPQEEVPKLLNLKAVAGI----VSPEELQNDRAVPVTLGSRP-RPSPESCFVVFLPDSEAFVEAFLAKATKTEG 265          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A3Q3JN19_MONAL (Protein XRP2 n=3 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q3JN19_MONAL)

HSP 1 Score: 161 bits (408), Expect = 8.440e-43
Identity = 94/287 (32.75%), Postives = 144/287 (50.17%), Query Frame = 1
Query:    7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDA 861
            K+DPKD++++G +   + + PG + GQQF+++EC +C+ Y+ DH+A +TID                          VVACQQFR RDC     FL  ATQP+IESST ++F C+   Y  LA  F    LS++NN WS I +FT   G  +WS LP  S   DF+    P+     V  + ++  ++VPLT G R    +E   FV     +  A   KL+  V + G           L++TK +  +    K  F+ S ++++   +  P++ L+  G G  +A
Sbjct:   48 KVDPKDYMLTGLKDVTVGRLPGKLNGQQFVIQECENCNIYVFDHSATITIDDCVNCCIVLGPVKGSVFFRDCKDIKCVVACQQFRTRDCKKMEVFLCCATQPIIESSTGMKFGCFQYYYPELAFHFKDAGLSIFNNNWSNIHDFTPVSGENNWSLLPEASAVLDFVPAPDPESEFKSVRISTDSTRSIVPLTTGGRRKDSEESCLFVFFAGEYTTANARKLIDEVTAKGFV---------LIQTKEVSMRPEDMKRVFQNSAEDLTEWITKGPVIALELNGDGVVEA 325          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A813I807_POLGL (Protein XRP2 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I807_POLGL)

HSP 1 Score: 159 bits (403), Expect = 2.860e-42
Identity = 111/229 (48.47%), Postives = 147/229 (64.19%), Query Frame = 1
Query:    7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGG--RGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMP---AHIDAVLGKLLATVG 678
            KL+P D+IIS K  E ++KE G+I G+QF +EEC DCD +LLD+ A   ID XXXXXXXXXXXXXXXXXXXXXXX+ +VACQQFR RDC++C   L   T+P+IE+S N++FAC+  +YFSL GQ     L +WNNKWSQ+++F       +WS LP     +    +++  +    V   E  N   VP+T G R  +   E+CFVV +P   A ++A L K   T G
Sbjct:   32 KLNPADYIISKKIGETVIKEEGTIAGEQFNIEECKDCDIFLLDYIATAFIDXXXXXXXXXXXXXXXXXXXXXXXXSFIVACQQFRCRDCTDCNLALLCTTEPIIETSENMKFACFDFNYFSLRGQLNQAGLKLWNNKWSQVYDFNKNSTNPNWSLLPQEEVPKLLNLKAVAGI----VSDEELQNDRAVPVTLGSRP-RPSPESCFVVFLPDSEAFVEAFLAKATKTEG 255          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: XRP2_XENLA (Protein XRP2 n=5 Tax=Xenopus TaxID=8353 RepID=XRP2_XENLA)

HSP 1 Score: 159 bits (401), Expect = 6.760e-42
Identity = 120/296 (40.54%), Postives = 175/296 (59.12%), Query Frame = 1
Query:    7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHR-VGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMPAH---------IDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTD 858
            K+DPKD++ +G + + + K P  + GQQF+++EC +C+ Y+ DH+A +TI  XXXXXXXXXXXXXXXXXXXXXXX  VVACQQFR RDC     FL  +TQP+IESST+++F C+   Y  LA QF    LS+ NN WS I +FT   G  +WS LPP +  +DFI   LPD    + V  + + + +++P+T G R LK  +E+C VV              ID ++GK L+                 L++TK +  ++  +K  F+ +  ++  L    P++ L++ G G+ D
Sbjct:   37 KVDPKDYMFTGLKDQTVGKLPDKVAGQQFVIQECENCNIYIFDHSATITIXXXXXXXXXXXXXXXXXXXXXXXXXKCVVACQQFRTRDCRRMDVFLCCSTQPIIESSTSMKFGCFQYYYPELALQFKEAGLSILNNTWSNIHDFTPVAGETNWSLLPPDAVIQDFI--PLPDSDELKCVRVSADVHKSIIPVTWGQR-LKKSDESCLVVFFAGDYTTANARKMIDEMVGKGLS-----------------LIQTKEVAMKIEDAKRVFQDNITDLICLLEKGPVVALEFNGEGAVD 312          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: G3PKZ5_GASAC (Protein XRP2 n=4 Tax=Gasterosteidae TaxID=69291 RepID=G3PKZ5_GASAC)

HSP 1 Score: 159 bits (401), Expect = 9.950e-42
Identity = 117/288 (40.62%), Postives = 165/288 (57.29%), Query Frame = 1
Query:    7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETC-FVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDA 861
            K+DPKD++++G +   + + PG +GGQQF++++C +CD Y+ DH+AA+TI  XXXXXXXXXXXXXXXXXXXX     VVACQQFR RDC     FL  ATQP+IESST ++F C+   Y  LA  F    LSV+NN WS + +FT   G  +WS LP  S   + +    P+     V  + +   ++VPLT G R  K  EE+C FV     +  A   KL+    + G           L++TK +  +    K  F+ S + +  L S  P++ L+ +G G  +A
Sbjct:   53 KVDPKDYMLTGLKDVTVGRLPGKLGGQQFVIQDCENCDIYVFDHSAAVTIXXXXXXXXXXXXXXXXXXXXXXRDVKCVVACQQFRTRDCKKMEVFLCCATQPIIESSTGMRFGCFQYFYPELAFHFKDAGLSVFNNNWSNVHDFTPVSGETNWSLLPEASAVLESVPPPGPESEFKSVRISADAERSIVPLTTGGRR-KASEESCLFVFFAGEYSTANARKLIDEASAKGFV---------LIQTKEVSMRPEDVKRVFQNSAESLVPLRSEGPVIALELSGDGVVEA 330          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A8C2YWF9_CYCLU (Protein XRP2 n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2YWF9_CYCLU)

HSP 1 Score: 159 bits (401), Expect = 1.020e-41
Identity = 111/288 (38.54%), Postives = 161/288 (55.90%), Query Frame = 1
Query:    7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETC-FVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDA 861
            K+DPKD+++SG +     + PGS+ GQQF+++EC +CD Y+ DH+A +T+D XXXXXXXXXXXXXXXX         VVACQQFR RDC     FL  ATQP+IESST ++F C+   Y  LA  F    LS++NN WS + +FT   G  +WS LP  S   D + +  P+     V  + +   ++VPLT G R  K+ EE+C FV     +  A   KL+    + G           L++TK +  +       F+ S +++    +  P++ L+ +G G  +A
Sbjct:   54 KVDPKDYMLSGLRDVTAGRLPGSLSGQQFVIQECENCDIYVFDHSATVTVDXXXXXXXXXXXXXXXXXFRDCKDVKCVVACQQFRTRDCKKMEVFLSCATQPIIESSTGMKFGCFQYFYPELAFHFKDAGLSIFNNNWSNVHDFTPVSGENNWSLLPETSAVLDSVPKPDPESEFKAVRISADPERSIVPLTKGGRR-KVSEESCLFVFFAGEYATANARKLIDETSAQGFV---------LVQTKEVSMRPDDVSRVFQRSAEDLVDYVTKGPVIALELSGDGVVEA 331          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: UPI001CFBF139 (protein XRP2 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBF139)

HSP 1 Score: 158 bits (399), Expect = 1.390e-41
Identity = 119/294 (40.48%), Postives = 175/294 (59.52%), Query Frame = 1
Query:    7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHR-VGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMPA-HIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDAALALL 876
            K+DPKD+  SG + + + +  G++ GQQFI+++C +C+ Y+ DH+A +T+D XXXXXXXXXXXXXXXXXXXXXXX  +VACQQFR+RDC     FL  ATQPV+ESST ++F C+   Y  LA QF    LS++NN WS I +FT   G  +WS LP  S+ +DFI   LPD    + V    + + +++P+T G R  K  +E+C VV     +  A   KL+  +   G           L++TK +  +   +   F+    E S +  + P++ L++ G G  +A  A++
Sbjct:   39 KVDPKDYTFSGLKDQTVGRLSGTVAGQQFIIQDCENCNIYIFDHSATVTVDXXXXXXXXXXXXXXXXXXXXXXXXKCMVACQQFRSRDCKKMDIFLCCATQPVVESSTGMKFGCFQYYYPELAFQFKDASLSIFNNNWSSIHDFTPVSGETNWSLLPEDSNIQDFI--PLPDSEELKSVRINTDVSRSIIPITHGQRR-KTSDESCLVVFFAGDYTTANARKLIDEMTGKGLV---------LVQTKEVAMKPEDANRVFQERADEFSPMLEAGPVVALEFNGEGVVEACQAII 320          
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A7S0M589_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M589_9CRYP)

HSP 1 Score: 159 bits (401), Expect = 1.820e-41
Identity = 123/280 (43.93%), Postives = 163/280 (58.21%), Query Frame = 1
Query:    1 KVKLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGGRG--DWSCLPPGSHHRDFIR--RSLPDLARHRVGYTENTNGAVVPLTAGIRDLK-IDEETCFVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPIL 825
            K KLDPKDF+ S  + +V +KEPGSI GQ FIVE+C DCD YL D+ A + ID XXXXXXXXXXXXXXXXXXXXXXX  + ACQQ+RAR+C NC   LFS+T PVIE S+ ++F C+   YFSLA QF A  +SV++NKWS+I++F       +WS LP  +   D ++    L        G T   +  VVPLT G+R      +E  F++ +P         L A        + PPP    L++TK +    A++K   +  P      A++   L
Sbjct:  127 KKKLDPKDFMFSKLKGQVCIKEPGSIDGQMFIVEDCEDCDVYLCDYMATVQIDYXXXXXXXXXXXXXXXXXXXXXXXKCIFACQQYRARECKNCDTLLFSSTAPVIEMSSGMRFGCFRFFYFSLAQQFEAIKMSVFDNKWSEIYDFNPNPASPNWSFLPAETMAADLMKPLAGLGSFVSPEEGETHKDD-EVVPLTCGLRKKDWAGQERAFLLFLPGQHARASAALTAA-------ALPPPL--GLIQTKRMALDAAKAKLLLKRCPDSAIVAAAATAFL 396          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRD4_ECTSI8.280e-13565.35Retinitis pigmentosa 2 (X-linked recessive) n=1 Ta... [more]
A0A6U2EBU0_HEMAN9.540e-4839.37Protein XRP2 n=1 Tax=Hemiselmis andersenii TaxID=4... [more]
A0A813IEF2_POLGL4.130e-4348.47Hypothetical protein (Fragment) n=1 Tax=Polarella ... [more]
A0A3Q3JN19_MONAL8.440e-4332.75Protein XRP2 n=3 Tax=Clupeocephala TaxID=186625 Re... [more]
A0A813I807_POLGL2.860e-4248.47Protein XRP2 n=1 Tax=Polarella glacialis TaxID=899... [more]
XRP2_XENLA6.760e-4240.54Protein XRP2 n=5 Tax=Xenopus TaxID=8353 RepID=XRP2... [more]
G3PKZ5_GASAC9.950e-4240.63Protein XRP2 n=4 Tax=Gasterosteidae TaxID=69291 Re... [more]
A0A8C2YWF9_CYCLU1.020e-4138.54Protein XRP2 n=1 Tax=Cyclopterus lumpus TaxID=8103... [more]
UPI001CFBF1391.390e-4140.48protein XRP2 n=1 Tax=Protopterus annectens TaxID=7... [more]
A0A7S0M589_9CRYP1.820e-4143.93Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1723contigH-paniculata_contig1723:18322..22738 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score400.6
Seed ortholog evalue7.7e-109
Seed eggNOG ortholog2880.D7FRD4
Preferred nameRP2
KEGG koko:K18272
Hectar predicted targeting categoryother localisation
GOsGO:0001654,GO:0001655,GO:0001822,GO:0001894,GO:0001895,GO:0001947,GO:0002009,GO:0003007,GO:0003008,GO:0003143,GO:0003407,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005814,GO:0005815,GO:0005856,GO:0005886,GO:0005929,GO:0006457,GO:0006810,GO:0006892,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007600,GO:0007601,GO:0008047,GO:0008150,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009987,GO:0010842,GO:0012505,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016604,GO:0022008,GO:0030154,GO:0030182,GO:0030234,GO:0030695,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032501,GO:0032502,GO:0035050,GO:0035239,GO:0035295,GO:0035845,GO:0036064,GO:0042461,GO:0042592,GO:0042995,GO:0043010,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044451,GO:0044459,GO:0044463,GO:0044464,GO:0045494,GO:0046530,GO:0048193,GO:0048468,GO:0048513,GO:0048562,GO:0048568,GO:0048592,GO:0048593,GO:0048598,GO:0048646,GO:0048666,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0048871,GO:0050790,GO:0050877,GO:0050953,GO:0051082,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0060041,GO:0060042,GO:0060249,GO:0060429,GO:0060562,GO:0060589,GO:0061371,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071840,GO:0071944,GO:0072001,GO:0072359,GO:0090596,GO:0097708,GO:0098590,GO:0098772,GO:0120025,GO:0120038,GO:1990075
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG2512@1,KOG2512@2759
Ec32 ortholog descriptionretinitis pigmentosa 2 (X-linked recessive)
Ec32 orthologEc-21_002520.1
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons7
Model size1074
Cds size1074
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929359.4555974-CDS-H-paniculata_contig1723:18321..183721622929359.4555974-CDS-H-paniculata_contig1723:18321..18372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 18322..18372 +
1691480829.671965-CDS-H-paniculata_contig1723:18321..183721691480829.671965-CDS-H-paniculata_contig1723:18321..18372Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 18322..18372 +
1622929359.4810472-CDS-H-paniculata_contig1723:19454..196061622929359.4810472-CDS-H-paniculata_contig1723:19454..19606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 19455..19606 +
1691480829.689038-CDS-H-paniculata_contig1723:19454..196061691480829.689038-CDS-H-paniculata_contig1723:19454..19606Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 19455..19606 +
1622929359.510819-CDS-H-paniculata_contig1723:20333..204981622929359.510819-CDS-H-paniculata_contig1723:20333..20498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 20334..20498 +
1691480829.7010403-CDS-H-paniculata_contig1723:20333..204981691480829.7010403-CDS-H-paniculata_contig1723:20333..20498Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 20334..20498 +
1622929359.528674-CDS-H-paniculata_contig1723:21001..211211622929359.528674-CDS-H-paniculata_contig1723:21001..21121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 21002..21121 +
1691480829.711805-CDS-H-paniculata_contig1723:21001..211211691480829.711805-CDS-H-paniculata_contig1723:21001..21121Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 21002..21121 +
1622929359.5406277-CDS-H-paniculata_contig1723:21346..214351622929359.5406277-CDS-H-paniculata_contig1723:21346..21435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 21347..21435 +
1691480829.7225964-CDS-H-paniculata_contig1723:21346..214351691480829.7225964-CDS-H-paniculata_contig1723:21346..21435Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 21347..21435 +
1622929359.5551498-CDS-H-paniculata_contig1723:21874..220501622929359.5551498-CDS-H-paniculata_contig1723:21874..22050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 21875..22050 +
1691480829.7302344-CDS-H-paniculata_contig1723:21874..220501691480829.7302344-CDS-H-paniculata_contig1723:21874..22050Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 21875..22050 +
1622929359.570247-CDS-H-paniculata_contig1723:22417..227381622929359.570247-CDS-H-paniculata_contig1723:22417..22738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 22418..22738 +
1691480829.7375884-CDS-H-paniculata_contig1723:22417..227381691480829.7375884-CDS-H-paniculata_contig1723:22417..22738Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1723 22418..22738 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1723.4030.1prot_H-paniculata_contig1723.4030.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1723 18322..22738 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1723.4030.1

>prot_H-paniculata_contig1723.4030.1 ID=prot_H-paniculata_contig1723.4030.1|Name=mRNA_H-paniculata_contig1723.4030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=358bp
KVKLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAAL
TIDVCTDCRIFAGPCESSLFIRDCKDCTVVVACQQFRARDCSNCTFFLFS
ATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGGR
GDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKI
DEETCFVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQ
VAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDAALALLVAAGAATA
SQAAALTAEEGAGKGKGGGLNYFMAGDSVESTLKAKTFFEQWDEDKSTSL
KGGDNRG*
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mRNA from alignment at H-paniculata_contig1723:18322..22738+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1723.4030.1 ID=mRNA_H-paniculata_contig1723.4030.1|Name=mRNA_H-paniculata_contig1723.4030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4417bp|location=Sequence derived from alignment at H-paniculata_contig1723:18322..22738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGAAGCTAGACCCCAAAGACTTCATCATATCAGGCAAGCAGAAAGA GGTAAGATTCTCAAGCGAAGAAGACTAGAGTGGGACCGGGATCAAGGCTC ACGGTGACTGAACATTTGATCACATTCCTAGAAGCCTGCTTAGGTGTGTT CGCAGAGCGAGGTTGGATTATTAGCATTTGTTTTCAACTGTCGATTTCTC GGTAAAAGTGTTCGGCACTGCAATACTCAAGCTTCGCGCGTACCGTAATA AGTCGCCTTAAATGGATGCAATCATCCAGGTAGCGTAGGTAGCGCTGTTC TGTGGCACAAGACAAAAAGGGCAACTTGAATCGTAAACCGTATTCCCCCT GCAGTATAGGCAACATTTCACCACACCCTCTCGGTGAAAGATTCCTGCAA CAAATATCGCAAACACGCAGAGCACGTAAAATACCGAACCGAACCTCTTT ATACGAAATATTGCCACCGAAATGTTTTCACGGCAGTTGAGATTAGCACT TTCCCCCGCTTTGCAACTAAGAAAAAGGGAGGAGTCAACCTCCTATGCAG TACCTCGAGGGAAGTCCATCCTGGATTATAGGGGATGAGATTGTGTTGTA GGATGTACAGATTTCTAGATTTCTGTTTTCTTGGGGTCCCCGCCTTGACG TCGGTAGGAAAGAGATGGGCCCATGAAATAGAGAAAGGAGCCTTACTGCT GAAGCTGAGCCTTGCAAAACGCCACGTATTGCTGTGCTGGAACAGTGATT GAGACCATGACTGAGATCCTATATGCTGATGTGTGAATCCCTTGGTAATG AACGAACAGTCTATTGACGCCAATCTGAGTTACCCTGTCCAAGAATTGCA CATCTACCCTTTATCTTACGGCACCCAGCACCCCCGGTGTAAAAGACATG ACGCGCGTCGTCGACATTGTTCAATTTGATACTTTTATGGCCGCCTATTA GAGCTCGACAACGCTATAGTGATCAAGGTGGCGAGCTAGAATACGAGTGG CACTCGTTGGCTGTCCCGTAAATGACGCATCTAGCTTGGCATATGGTACC TGTTTCGGCAACGTTGAAAGATCAAATATCCCCTTTGACCTGATTGGCCC TTTCTGCTGTCACCCGGGCCTTTCTTTCACCAGGTGTTGGTGAAGGAACC CGGAAGTATAGGTGGGCAGCAGTTCATCGTCGAAGAGTGCTCTGACTGCG ATGCCTACCTCCTGGACCACACGGCCGCCCTCACGATCGACGTTTGTACT GACTGTCGGATCTTTGCAGGGCCGTGCGAATCGAGGTACTATAAATGACA ACAATCCACCGCGCTCGTCTTCCGAATAGATTCCTAGCCGTGATATCGGG CTCTGGTCGCCTGGATGACGCCGAGAGTACGGCGGCTTACACCACCCTCA GTGATGGTACTTTTCAAAACTTGATATTCTCGATTCATGCAGTGTTTGTG GAACTACATACTGTGTCGTGCGAAAAGTCTTGTCAAGACCTGTTGACCGA CGAGGTCTTTTTTCGGCAGACCAGGGTGCTGCTTCTCACGTTGTTTCTCA GATCCCCAGGAGATCAGGGTAAAAACAAATCTGATACTTACCCTGGATTG TCAAAGTCACAGCTTTCGTGCACCAGTTCTAAAATATTTTCTCCATTATT TTTTCTCCGTCCATGTATCCGGATCTCCGCAGACCGAGGTCTCGGAGGGG ACTTCTCGCAGCTAAGATCTCTATATTTCGCTATCAAACACACAAGCACT ATAGGACTTGGGTCAAGAAAGGGATCGGCACTCACTAAAACCCTTCAGAT GGCTCCTAGATATGCCCGGTACACGGGCTGCCCTGTCCATTTGGGCTTTG CTTCTCGAGAGATCGTGCTTGAAAAATTCTTTCACCCAAGTTGATATACC CTGTTAAGTACGGCATTAATCCCGACTAAGAACTAAAAATCTCCCCCCCC CCGCCTCTCTGCCCATATTTTTCCAAATTTCATTTTCTTTCGCAACTATC CTATGTCTCCAGCCTGTTCATCCGCGACTGTAAAGACTGCACGGTGGTGG TGGCCTGCCAGCAGTTTCGCGCACGAGATTGCTCCAACTGCACATTTTTC TTGTTTAGCGCAACCCAGCCGGTGATCGAGTCATCTACCAATCTTCAGTT TGCCTGCTACACACTTGACTACTTCAGGTAAAGTCTACTCATTTGCTCAA CGTTGTCCACAATACTCTTTAACGCTTTTTTTCGCAGTCGATTCCGAAGT GTTTCAGCTGTGCTCTGCCTTGTGGATTTCACTCAAACTTCCACTATAAG GAACTCATGGGCATAATCACATCCGGTGGTGAAAACAATTTGAACAAGAT AAGGTCTCATGTTTGGAAATGTGGCGAATAACTACGTGAAACACAAAACA AAGCGCATATTCCTGTGGGTTGCACTCAAGTGCGGACGTAGTAAAGCAGC GGATCATGGACAGAACATTGGCTTAGATTGCGTGCAAATACAACAACTAG TATGCAGGCCACAAGCTACACCAGTGGCGCATGACACTTTGAGATAACAC TTGGATAGAGTACGGAAAAAAATCCCTAGAAAATGGTTACACCATTACCG TATTATTGGTAAGGATACGCATCAAACGACCTTGGGGGACGAAACCACGT CTCGCTTCCTTGCCGCCGAATCCTCCTTAGTCTGGCCGGGCAGTTTGCCG CTGGCCATCTGTCTGTCTGGAATAACAAGTGGAGCCAAATCTTCAATTTT ACTGGGGGAAGGGGAGACTGGTCGTGCCTACCACCTGGCTCCCACCACAG GTAAAGCAGGGTTCTGCTACCTCACAAAAACCGTAGCGTTCTTTGGGGTA GTATCCTGCATGGACCCACTCACGCTCCCCAGCGTTCGGTCACGCTCACA ATTCCATTTTCCAATATATTACGTTGCACAATTTTGATGTTATACACGTA TTGTATTGACAATGAATGACTTCGTGTTGCGCCCTCTGTTTCGTGTCCAT TCCTTCGAACGACACCTCAAACAAGGGATTTCATTCGTCGCAGTTTGCCT GACTTGGCGAGGCACAGAGTGGGGTACACGGAGAACACGAATGGAGCCGT GGTCCCTCTAACTGGTGAGAAATCTGTTCAGCTGGCTTGTCTTGGAGGTA TTGAAGGAACCGTTCGAACGAAACTCGCCTGCTCTGCGTTTGTACCAGCA CCACAGATTTTGGGCGGGTTTCTGCTGCGTTGCGAATGCTGGAAATTTCG CCGCATAGTATTGCGATTGAGATATAAACCGTGAAACGTTACATACATCA GGATGAAGATACTCACGAACGCACTCAACAGCTGCGAGAACAATACGCGT CGCTACGGTCTAACGCTCATAAGTATGCATCAAATCTATTCCAGCATTTT ACAAATTCTTCGCCCCAAAAGAACCACGTTAAAAGGCGGTCATTGACAAA GTTTGGTAATATAAACCTAAGACACAGTTCTGGCCTCATCGCCAAAGTTT TGATCTACCCTTCCGGCGCGCGAACATTCACCGAATCGACATCATCTGCA TAGCCGGAATCCGAGACTTGAAAATAGACGAGGAAACGTGCTTCGTAGTC GTCATGCCGGCGCACATCGACGCGGTGTTGGGGAAACTGCTAGCCACGGT CGGAAGCCCCGGCAGTCAATCTTCTCCGCCCCCATTCCCCAGCAGGCTTC TGAGGACCAAGATTTTGTGCCCTCAAGTGGTAAGCTTTCAAACAAGATAA AATACTACACTACAGACATACCCAACAGATCTCGGGAGAGGCTCACATAG AGTCAAGTTAGAGTAGAGTATCCACTGATCACGGGTCCGTCCTGCGATAG CCGTGGTATGTACCTCCGCATCTCTATTCTGAATGCCGCGCTGGGATACT ACTTTGGCTTCTCGGCTGATTGAACACCGTCTTGACCAGTACGCCTCTCT GCCTTGCAGACTAGCGTTACCCGTCGACGCGGTACACCGTAATTGTATGC AAAAACACTGAACAAACACCACTCTCGGATGTATCCTCTACCACCCCCGT CCCGCTGCCAAACAACGTAACCACCTACCAAATCATGACCTTGCAGGCAC AGAGTAAGCCATTTTTCGAGGGCTCCCCAAAAGAGATGTCCACTTTAGCA TCCTCCGCCCCTATTCTAGGCCTACAGTGGGCTGGCCCGGGGAGCACTGA CGCGGCTCTCGCCTTGCTAGTTGCCGCTGGCGCCGCAACTGCTTCTCAAG CAGCGGCTCTTACCGCGGAAGAAGGGGCGGGGAAGGGGAAGGGGGGGGGA TTGAACTACTTCATGGCGGGTGATTCTGTGGAGTCGACCTTGAAAGCTAA GACTTTCTTTGAGCAATGGGACGAGGATAAGAGTACGTCTCTGAAAGGAG GTGATAACCGAGGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig1723:18322..22738+

>mRNA_H-paniculata_contig1723.4030.1 ID=mRNA_H-paniculata_contig1723.4030.1|Name=mRNA_H-paniculata_contig1723.4030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig1723:18322..22738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGAAGCTAGACCCCAAAGACTTCATCATATCAGGCAAGCAGAAAGA
GAAGGTGAAGCTAGACCCCAAAGACTTCATCATATCAGGCAAGCAGAAAG
AGGTGTTGGTGAAGGAACCCGGAAGTATAGGTGGGCAGCAGTTCATCGTC
GAAGAGTGCTCTGACTGCGATGCCTACCTCCTGGACCACACGGCCGCCCT
CACGATCGACGTTTGTACTGACTGTCGGATCTTTGCAGGGCCGTGCGAAT
CGAGGTGTTGGTGAAGGAACCCGGAAGTATAGGTGGGCAGCAGTTCATCG
TCGAAGAGTGCTCTGACTGCGATGCCTACCTCCTGGACCACACGGCCGCC
CTCACGATCGACGTTTGTACTGACTGTCGGATCTTTGCAGGGCCGTGCGA
ATCGAGCCTGTTCATCCGCGACTGTAAAGACTGCACGGTGGTGGTGGCCT
GCCAGCAGTTTCGCGCACGAGATTGCTCCAACTGCACATTTTTCTTGTTT
AGCGCAACCCAGCCGGTGATCGAGTCATCTACCAATCTTCAGTTTGCCTG
CTACACACTTGACTACTTCAGCCTGTTCATCCGCGACTGTAAAGACTGCA
CGGTGGTGGTGGCCTGCCAGCAGTTTCGCGCACGAGATTGCTCCAACTGC
ACATTTTTCTTGTTTAGCGCAACCCAGCCGGTGATCGAGTCATCTACCAA
TCTTCAGTTTGCCTGCTACACACTTGACTACTTCAGTCTGGCCGGGCAGT
TTGCCGCTGGCCATCTGTCTGTCTGGAATAACAAGTGGAGCCAAATCTTC
AATTTTACTGGGGGAAGGGGAGACTGGTCGTGCCTACCACCTGGCTCCCA
CCACAGTCTGGCCGGGCAGTTTGCCGCTGGCCATCTGTCTGTCTGGAATA
ACAAGTGGAGCCAAATCTTCAATTTTACTGGGGGAAGGGGAGACTGGTCG
TGCCTACCACCTGGCTCCCACCACAGGGATTTCATTCGTCGCAGTTTGCC
TGACTTGGCGAGGCACAGAGTGGGGTACACGGAGAACACGAATGGAGCCG
TGGTCCCTCTAACTGGGATTTCATTCGTCGCAGTTTGCCTGACTTGGCGA
GGCACAGAGTGGGGTACACGGAGAACACGAATGGAGCCGTGGTCCCTCTA
ACTGCCGGAATCCGAGACTTGAAAATAGACGAGGAAACGTGCTTCGTAGT
CGTCATGCCGGCGCACATCGACGCGGTGTTGGGGAAACTGCTAGCCACGG
TCGGAAGCCCCGGCAGTCAATCTTCTCCGCCCCCATTCCCCAGCAGGCTT
CTGAGGACCAAGATTTTGTGCCCTCAAGTGCCGGAATCCGAGACTTGAAA
ATAGACGAGGAAACGTGCTTCGTAGTCGTCATGCCGGCGCACATCGACGC
GGTGTTGGGGAAACTGCTAGCCACGGTCGGAAGCCCCGGCAGTCAATCTT
CTCCGCCCCCATTCCCCAGCAGGCTTCTGAGGACCAAGATTTTGTGCCCT
CAAGTGGCACAGAGTAAGCCATTTTTCGAGGGCTCCCCAAAAGAGATGTC
CACTTTAGCATCCTCCGCCCCTATTCTAGGCCTACAGTGGGCTGGCCCGG
GGAGCACTGACGCGGCTCTCGCCTTGCTAGTTGCCGCTGGCGCCGCAACT
GCTTCTCAAGCAGCGGCTCTTACCGCGGAAGAAGGGGCGGGGAAGGGGAA
GGGGGGGGGATTGAACTACTTCATGGCGGGTGATTCTGTGGAGTCGACCT
TGAAAGCTAAGACTTTCTTTGAGCAATGGGACGAGGATAAGAGTACGTCT
CTGAAAGGAGGTGATAACCGAGGATAAGCACAGAGTAAGCCATTTTTCGA
GGGCTCCCCAAAAGAGATGTCCACTTTAGCATCCTCCGCCCCTATTCTAG
GCCTACAGTGGGCTGGCCCGGGGAGCACTGACGCGGCTCTCGCCTTGCTA
GTTGCCGCTGGCGCCGCAACTGCTTCTCAAGCAGCGGCTCTTACCGCGGA
AGAAGGGGCGGGGAAGGGGAAGGGGGGGGGATTGAACTACTTCATGGCGG
GTGATTCTGTGGAGTCGACCTTGAAAGCTAAGACTTTCTTTGAGCAATGG
GACGAGGATAAGAGTACGTCTCTGAAAGGAGGTGATAACCGAGGATAA
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