mRNA_H-paniculata_contig1723.4030.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: D7FRD4_ECTSI (Retinitis pigmentosa 2 (X-linked recessive) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRD4_ECTSI) HSP 1 Score: 399 bits (1026), Expect = 8.280e-135 Identity = 249/381 (65.35%), Postives = 278/381 (72.97%), Query Frame = 1
Query: 10 LDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGGR-GDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDAALALLVAAGAATXXXXXXX----------------------TAEEGAG-----------KGKGGGLNYFMAGDSVESTLKAKTFFEQWDEDKSTSL 1050
L+P DFI S KQKEV+V+EPGSIGGQQFIVEECS+C+ YLLDHTAALTID+ XXXXXXX XXXXXXXXXXXXTVVVACQQFRARD TFFLFSATQPVIESS L+F CYTLDYFSLAGQFAA LSVWNN+WSQI NFTGG GDWSCLP GSHHRDF RSLP+ +R RVGYTENT+GAVVP+TAG+R EETCF+VVMP HIDAVLGKLLA G G S SRLLRTK+ PQ+AQSK FF G+P M+ LASS P+LG+QWAGPGS +AA++LL AAG XXXXXXX +A+ GAG +G GGG + +G S S KA+ FFEQWDEDK T L
Sbjct: 39 LNPSDFIFSCKQKEVIVREPGSIGGQQFIVEECSECEVYLLDHTAALTIDLCXXXXXXXGPCXXXXXXXXXXXXTVVVACQQFRARDXXXXTFFLFSATQPVIESSVGLRFGCYTLDYFSLAGQFAAAKLSVWNNRWSQIHNFTGGGDGDWSCLPEGSHHRDFTTRSLPEASRQRVGYTENTHGAVVPITAGMRGFTEAEETCFIVVMPGHIDAVLGKLLAVGG--GGDSPISATTSRLLRTKLFRPQMAQSKTFFSGAPSSMAELASSFPVLGMQWAGPGSAEAAVSLLAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSADIGAGNGTSEYYMVAGRGDGGGNDDGRSG-SESSAAKARVFFEQWDEDKGTPL 416
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A6U2EBU0_HEMAN (Protein XRP2 n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U2EBU0_HEMAN) HSP 1 Score: 176 bits (446), Expect = 9.540e-48 Identity = 137/348 (39.37%), Postives = 190/348 (54.60%), Query Frame = 1
Query: 1 KVKLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGGRGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNG--AVVPLTAGIRDLKI-DEETCFVVVMPAHID---AVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDAALALLVAAGAATXXXXXXXTAEEGAGKGKGGGLNYFMAGDSVESTLKAKTFFEQW 1026
K K DPKDF+ S + +V +K PG+I GQ FIVE+C DCD Y+ D+TA + +D XXXXXXXXXXXXXXXXXXXXXXX + ACQQ R R+C NC F L+ +T PVIE S N++F C+ YFSLA QF A LSV++NKWS++++FT G+ +WS LP + D I+ E +G +VVP+TAG+R +E FV+++P+ A+ KL P L++TK L A+ K E T ++ +G++ AG G+ AL + AAG G + +GD+ ++ + FFEQW
Sbjct: 106 KKKPDPKDFMFSNLKNQVCIKPPGAINGQMFIVEDCEDCDIYVCDNTAQVQVDYXXXXXXXXXXXXXXXXXXXXXXXXCIFACQQLRTRECVNCDFLLYVSTAPVIEESKNMRFGCFRFFYFSLAQQFEAAKLSVYDNKWSEVYDFTPGKDNWSFLPLNTKASDLIKPLSAHPGSFSTAEEEAAHGDDSVVPVTAGLRKGDFAGKERSFVLLLPSKAPEGPALFSKL--------------PESCTLIQTKQLQLDAAKVKTLLEKCSDSTVTGSAKGMCVGVEVAGDGALAGALKAVEAAG---------------------GSAVAYASGDADAASFELNVFFEQW 418
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A813IEF2_POLGL (Hypothetical protein (Fragment) n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813IEF2_POLGL) HSP 1 Score: 159 bits (403), Expect = 4.130e-43 Identity = 111/229 (48.47%), Postives = 147/229 (64.19%), Query Frame = 1
Query: 7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGG--RGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMP---AHIDAVLGKLLATVG 678
KL+P D+IIS K E ++KE G+I G+QF +EEC DCD +LLD+ A ID XXXXXXXXXXXXXXXXXXXXXXX+ +VACQQFR RDC++C L T+P+IE+S N++FAC+ +YFSL GQ L +WNNKWSQ+++F +WS LP + +++ + V E N VP+T G R + E+CFVV +P A ++A L K T G
Sbjct: 42 KLNPADYIISKKIGETVIKEEGTIAGEQFNIEECKDCDIFLLDYIATAFIDXXXXXXXXXXXXXXXXXXXXXXXXSFIVACQQFRCRDCTDCNLALLCTTEPIIETSENMKFACFDFNYFSLRGQLNQAGLKLWNNKWSQVYDFNKNSTNPNWSLLPQEEVPKLLNLKAVAGI----VSPEELQNDRAVPVTLGSRP-RPSPESCFVVFLPDSEAFVEAFLAKATKTEG 265
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A3Q3JN19_MONAL (Protein XRP2 n=3 Tax=Clupeocephala TaxID=186625 RepID=A0A3Q3JN19_MONAL) HSP 1 Score: 161 bits (408), Expect = 8.440e-43 Identity = 94/287 (32.75%), Postives = 144/287 (50.17%), Query Frame = 1
Query: 7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDA 861
K+DPKD++++G + + + PG + GQQF+++EC +C+ Y+ DH+A +TID VVACQQFR RDC FL ATQP+IESST ++F C+ Y LA F LS++NN WS I +FT G +WS LP S DF+ P+ V + ++ ++VPLT G R +E FV + A KL+ V + G L++TK + + K F+ S ++++ + P++ L+ G G +A
Sbjct: 48 KVDPKDYMLTGLKDVTVGRLPGKLNGQQFVIQECENCNIYVFDHSATITIDDCVNCCIVLGPVKGSVFFRDCKDIKCVVACQQFRTRDCKKMEVFLCCATQPIIESSTGMKFGCFQYYYPELAFHFKDAGLSIFNNNWSNIHDFTPVSGENNWSLLPEASAVLDFVPAPDPESEFKSVRISTDSTRSIVPLTTGGRRKDSEESCLFVFFAGEYTTANARKLIDEVTAKGFV---------LIQTKEVSMRPEDMKRVFQNSAEDLTEWITKGPVIALELNGDGVVEA 325
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A813I807_POLGL (Protein XRP2 n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813I807_POLGL) HSP 1 Score: 159 bits (403), Expect = 2.860e-42 Identity = 111/229 (48.47%), Postives = 147/229 (64.19%), Query Frame = 1
Query: 7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGG--RGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMP---AHIDAVLGKLLATVG 678
KL+P D+IIS K E ++KE G+I G+QF +EEC DCD +LLD+ A ID XXXXXXXXXXXXXXXXXXXXXXX+ +VACQQFR RDC++C L T+P+IE+S N++FAC+ +YFSL GQ L +WNNKWSQ+++F +WS LP + +++ + V E N VP+T G R + E+CFVV +P A ++A L K T G
Sbjct: 32 KLNPADYIISKKIGETVIKEEGTIAGEQFNIEECKDCDIFLLDYIATAFIDXXXXXXXXXXXXXXXXXXXXXXXXSFIVACQQFRCRDCTDCNLALLCTTEPIIETSENMKFACFDFNYFSLRGQLNQAGLKLWNNKWSQVYDFNKNSTNPNWSLLPQEEVPKLLNLKAVAGI----VSDEELQNDRAVPVTLGSRP-RPSPESCFVVFLPDSEAFVEAFLAKATKTEG 255
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: XRP2_XENLA (Protein XRP2 n=5 Tax=Xenopus TaxID=8353 RepID=XRP2_XENLA) HSP 1 Score: 159 bits (401), Expect = 6.760e-42 Identity = 120/296 (40.54%), Postives = 175/296 (59.12%), Query Frame = 1
Query: 7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHR-VGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMPAH---------IDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTD 858
K+DPKD++ +G + + + K P + GQQF+++EC +C+ Y+ DH+A +TI XXXXXXXXXXXXXXXXXXXXXXX VVACQQFR RDC FL +TQP+IESST+++F C+ Y LA QF LS+ NN WS I +FT G +WS LPP + +DFI LPD + V + + + +++P+T G R LK +E+C VV ID ++GK L+ L++TK + ++ +K F+ + ++ L P++ L++ G G+ D
Sbjct: 37 KVDPKDYMFTGLKDQTVGKLPDKVAGQQFVIQECENCNIYIFDHSATITIXXXXXXXXXXXXXXXXXXXXXXXXXKCVVACQQFRTRDCRRMDVFLCCSTQPIIESSTSMKFGCFQYYYPELALQFKEAGLSILNNTWSNIHDFTPVAGETNWSLLPPDAVIQDFI--PLPDSDELKCVRVSADVHKSIIPVTWGQR-LKKSDESCLVVFFAGDYTTANARKMIDEMVGKGLS-----------------LIQTKEVAMKIEDAKRVFQDNITDLICLLEKGPVVALEFNGEGAVD 312
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: G3PKZ5_GASAC (Protein XRP2 n=4 Tax=Gasterosteidae TaxID=69291 RepID=G3PKZ5_GASAC) HSP 1 Score: 159 bits (401), Expect = 9.950e-42 Identity = 117/288 (40.62%), Postives = 165/288 (57.29%), Query Frame = 1
Query: 7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETC-FVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDA 861
K+DPKD++++G + + + PG +GGQQF++++C +CD Y+ DH+AA+TI XXXXXXXXXXXXXXXXXXXX VVACQQFR RDC FL ATQP+IESST ++F C+ Y LA F LSV+NN WS + +FT G +WS LP S + + P+ V + + ++VPLT G R K EE+C FV + A KL+ + G L++TK + + K F+ S + + L S P++ L+ +G G +A
Sbjct: 53 KVDPKDYMLTGLKDVTVGRLPGKLGGQQFVIQDCENCDIYVFDHSAAVTIXXXXXXXXXXXXXXXXXXXXXXRDVKCVVACQQFRTRDCKKMEVFLCCATQPIIESSTGMRFGCFQYFYPELAFHFKDAGLSVFNNNWSNVHDFTPVSGETNWSLLPEASAVLESVPPPGPESEFKSVRISADAERSIVPLTTGGRR-KASEESCLFVFFAGEYSTANARKLIDEASAKGFV---------LIQTKEVSMRPEDVKRVFQNSAESLVPLRSEGPVIALELSGDGVVEA 330
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A8C2YWF9_CYCLU (Protein XRP2 n=1 Tax=Cyclopterus lumpus TaxID=8103 RepID=A0A8C2YWF9_CYCLU) HSP 1 Score: 159 bits (401), Expect = 1.020e-41 Identity = 111/288 (38.54%), Postives = 161/288 (55.90%), Query Frame = 1
Query: 7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHRVGYTENTNGAVVPLTAGIRDLKIDEETC-FVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDA 861
K+DPKD+++SG + + PGS+ GQQF+++EC +CD Y+ DH+A +T+D XXXXXXXXXXXXXXXX VVACQQFR RDC FL ATQP+IESST ++F C+ Y LA F LS++NN WS + +FT G +WS LP S D + + P+ V + + ++VPLT G R K+ EE+C FV + A KL+ + G L++TK + + F+ S +++ + P++ L+ +G G +A
Sbjct: 54 KVDPKDYMLSGLRDVTAGRLPGSLSGQQFVIQECENCDIYVFDHSATVTVDXXXXXXXXXXXXXXXXXFRDCKDVKCVVACQQFRTRDCKKMEVFLSCATQPIIESSTGMKFGCFQYFYPELAFHFKDAGLSIFNNNWSNVHDFTPVSGENNWSLLPETSAVLDSVPKPDPESEFKAVRISADPERSIVPLTKGGRR-KVSEESCLFVFFAGEYATANARKLIDETSAQGFV---------LVQTKEVSMRPDDVSRVFQRSAEDLVDYVTKGPVIALELSGDGVVEA 331
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: UPI001CFBF139 (protein XRP2 n=1 Tax=Protopterus annectens TaxID=7888 RepID=UPI001CFBF139) HSP 1 Score: 158 bits (399), Expect = 1.390e-41 Identity = 119/294 (40.48%), Postives = 175/294 (59.52%), Query Frame = 1
Query: 7 KLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFT--GGRGDWSCLPPGSHHRDFIRRSLPDLARHR-VGYTENTNGAVVPLTAGIRDLKIDEETCFVVVMPA-HIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPILGLQWAGPGSTDAALALL 876
K+DPKD+ SG + + + + G++ GQQFI+++C +C+ Y+ DH+A +T+D XXXXXXXXXXXXXXXXXXXXXXX +VACQQFR+RDC FL ATQPV+ESST ++F C+ Y LA QF LS++NN WS I +FT G +WS LP S+ +DFI LPD + V + + +++P+T G R K +E+C VV + A KL+ + G L++TK + + + F+ E S + + P++ L++ G G +A A++
Sbjct: 39 KVDPKDYTFSGLKDQTVGRLSGTVAGQQFIIQDCENCNIYIFDHSATVTVDXXXXXXXXXXXXXXXXXXXXXXXXKCMVACQQFRSRDCKKMDIFLCCATQPVVESSTGMKFGCFQYYYPELAFQFKDASLSIFNNNWSSIHDFTPVSGETNWSLLPEDSNIQDFI--PLPDSEELKSVRINTDVSRSIIPITHGQRR-KTSDESCLVVFFAGDYTTANARKLIDEMTGKGLV---------LVQTKEVAMKPEDANRVFQERADEFSPMLEAGPVVALEFNGEGVVEACQAII 320
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Match: A0A7S0M589_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0M589_9CRYP) HSP 1 Score: 159 bits (401), Expect = 1.820e-41 Identity = 123/280 (43.93%), Postives = 163/280 (58.21%), Query Frame = 1
Query: 1 KVKLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALTIDVXXXXXXXXXXXXXXXXXXXXXXXTVVVACQQFRARDCSNCTFFLFSATQPVIESSTNLQFACYTLDYFSLAGQFAAGHLSVWNNKWSQIFNFTGGRG--DWSCLPPGSHHRDFIR--RSLPDLARHRVGYTENTNGAVVPLTAGIRDLK-IDEETCFVVVMPAHIDAVLGKLLATVGSPGSQSSPPPFPSRLLRTKILCPQVAQSKPFFEGSPKEMSTLASSAPIL 825
K KLDPKDF+ S + +V +KEPGSI GQ FIVE+C DCD YL D+ A + ID XXXXXXXXXXXXXXXXXXXXXXX + ACQQ+RAR+C NC LFS+T PVIE S+ ++F C+ YFSLA QF A +SV++NKWS+I++F +WS LP + D ++ L G T + VVPLT G+R +E F++ +P L A + PPP L++TK + A++K + P A++ L
Sbjct: 127 KKKLDPKDFMFSKLKGQVCIKEPGSIDGQMFIVEDCEDCDVYLCDYMATVQIDYXXXXXXXXXXXXXXXXXXXXXXXKCIFACQQYRARECKNCDTLLFSSTAPVIEMSSGMRFGCFRFFYFSLAQQFEAIKMSVFDNKWSEIYDFNPNPASPNWSFLPAETMAADLMKPLAGLGSFVSPEEGETHKDD-EVVPLTCGLRKKDWAGQERAFLLFLPGQHARASAALTAA-------ALPPPL--GLIQTKRMALDAAKAKLLLKRCPDSAIVAAAATAFL 396 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1723.4030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig1723.4030.1 >prot_H-paniculata_contig1723.4030.1 ID=prot_H-paniculata_contig1723.4030.1|Name=mRNA_H-paniculata_contig1723.4030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=358bp KVKLDPKDFIISGKQKEVLVKEPGSIGGQQFIVEECSDCDAYLLDHTAALback to top mRNA from alignment at H-paniculata_contig1723:18322..22738+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig1723.4030.1 ID=mRNA_H-paniculata_contig1723.4030.1|Name=mRNA_H-paniculata_contig1723.4030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4417bp|location=Sequence derived from alignment at H-paniculata_contig1723:18322..22738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig1723:18322..22738+ >mRNA_H-paniculata_contig1723.4030.1 ID=mRNA_H-paniculata_contig1723.4030.1|Name=mRNA_H-paniculata_contig1723.4030.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig1723:18322..22738+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |