prot_H-paniculata_contig17223.4026.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig17223.4026.1
Unique Name	prot_H-paniculata_contig17223.4026.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	70

Homology

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438ETV2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ETV2_VITVI)

HSP 1 Score: 68.9 bits (167), Expect = 3.030e-12
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 70
            IG+LI+L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:  145 IGALIYLANCTRLDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMSLFYSRESKQQLLGYADAGY 214

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438BRR6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BRR6_VITVI)

HSP 1 Score: 65.9 bits (159), Expect = 3.480e-12
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 70
            IG+L++L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:   33 IGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRRTTDMSLFYSRESKQQLLGYADAGY 102

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A5AUL4_VITVI (Uncharacterized protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A5AUL4_VITVI)

HSP 1 Score: 65.5 bits (158), Expect = 1.150e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 70
            IG+L++L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:   33 IGALMYLVNCTRPDIAFSVNLLARYNSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGY 102

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A5B0C2_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B0C2_VITVI)

HSP 1 Score: 64.7 bits (156), Expect = 1.350e-11
Identity = 32/70 (45.71%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 70
            IG+L++L  C R D+ FSV   AR+ S+PT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:   33 IGALMYLANCTRPDIAFSVNLLARYSSSPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGY 102

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A5B7V5_VITVI (Uncharacterized protein n=1 Tax=Vitis vinifera TaxID=29760 RepID=A5B7V5_VITVI)

HSP 1 Score: 67.8 bits (164), Expect = 1.360e-11
Identity = 34/70 (48.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 70
            IG+L++L  C R D+ FSV   AR+ SAPTQ+H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:  622 IGALMYLANCTRPDIAFSVNLLARYSSAPTQRHWNGIKHILRYLRGTTDMSLFYSRESKQQLLGYADAGY 691

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6H5JN95_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN95_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 3.420e-11
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 0

Query:    3 GSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 70
            GSL++LTQC R+D+ ++V Q  R  + P Q H+ A K +LRYLR  PD+PI Y + +  L  ++ +S+
Sbjct:  415 GSLLYLTQCTRYDLSYAVHQLTRARANPAQVHMAAPKHLLRYLRGTPDLPIVYKKVQFRLSCFTSSSF 482

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438EMA6_VITVI (Copia protein n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EMA6_VITVI)

HSP 1 Score: 65.9 bits (159), Expect = 3.910e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 70
            IG+L++L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:   43 IGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMGLFYSRESKQQLLGYADAGY 112

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438GT15_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GT15_VITVI)

HSP 1 Score: 66.2 bits (160), Expect = 4.630e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 70
            IG+L++L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:  313 IGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMSLFYSRESKQQLLGYADAGY 382

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A438E4J4_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E4J4_VITVI)

HSP 1 Score: 66.2 bits (160), Expect = 4.700e-11
Identity = 33/70 (47.14%), Postives = 47/70 (67.14%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRR-KLELVSYSDASY 70
            IG+L++L  C R D+ FSV   AR+ SAPT++H   +K +LRYLR   D+ + YSR  K +L+ Y+DA Y
Sbjct:  519 IGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNGIKHILRYLRGTTDMSLFYSRESKQQLLGYADAGY 588

[Close]

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 4.710e-11
Identity = 30/69 (43.48%), Postives = 47/69 (68.12%), Query Frame = 0

Query:    2 IGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPDIPITYSRRKLELVSYSDASY 70
            +GSL+FLT   R+++ ++V    R M+ PT QH++  KR+LRYLR  PD+P+ + R + +L  Y DAS+
Sbjct:  206 VGSLLFLTNTTRWEIGYAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASF 274

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig17223.4026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A438ETV2_VITVI	3.030e-12	48.57	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A438BRR6_VITVI	3.480e-12	47.14	Retrovirus-related Pol polyprotein from transposon...	[more]
A5AUL4_VITVI	1.150e-11	47.14	Uncharacterized protein n=2 Tax=Vitis vinifera Tax...	[more]
A5B0C2_VITVI	1.350e-11	45.71	Uncharacterized protein n=1 Tax=Vitis vinifera Tax...	[more]
A5B7V5_VITVI	1.360e-11	48.57	Uncharacterized protein n=1 Tax=Vitis vinifera Tax...	[more]
A0A6H5JN95_9PHAE	3.420e-11	42.65	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A438EMA6_VITVI	3.910e-11	47.14	Copia protein n=2 Tax=Vitis vinifera TaxID=29760 R...	[more]
A0A438GT15_VITVI	4.630e-11	47.14	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A438E4J4_VITVI	4.700e-11	47.14	Retrovirus-related Pol polyprotein from transposon...	[more]
A0A6H5J897_9PHAE	4.710e-11	43.48	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF275		coord: 1..68
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..1
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 2..12
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 24..70
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..23
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 13..23
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..68

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig17223	contig	H-paniculata_contig17223:4534..4743 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig17223.4026.1	mRNA_H-paniculata_contig17223.4026.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig17223 4534..4758 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig17223.4026.1 ID=prot_H-paniculata_contig17223.4026.1|Name=mRNA_H-paniculata_contig17223.4026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MIGSLIFLTQCARFDMCFSVTQAARFMSAPTQQHLMAVKRMLRYLRSYPD
IPITYSRRKLELVSYSDASY

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR039537	Retrotran_Ty1/copia-like