mRNA_H-paniculata_contig17221.4025.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17221.4025.1
Unique NamemRNA_H-paniculata_contig17221.4025.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17221.4025.1 vs. uniprot
Match: D7FN84_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN84_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 1.300e-5
Identity = 23/42 (54.76%), Postives = 26/42 (61.90%), Query Frame = 2 
Query:    8 CFHENDMVFAHSD----GSVVFGCDCGQFHPGVTLKEGVFAL 121
            CF   D     SD    G++ FGCDCGQFHPGV L  GV+AL
Sbjct:   64 CFESEDSTPVFSDDSDGGALKFGCDCGQFHPGVGLTAGVYAL 105
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BLAST of mRNA_H-paniculata_contig17221.4025.1 vs. uniprot
Match: A0A6H5L0K3_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K3_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.350e-5
Identity = 23/42 (54.76%), Postives = 26/42 (61.90%), Query Frame = 2 
Query:    8 CFHENDMVFAHSD----GSVVFGCDCGQFHPGVTLKEGVFAL 121
            CF   D     SD    G++ FGCDCGQFHPGV L  GV+AL
Sbjct:  282 CFESEDSTPVFSDDSDGGALKFGCDCGQFHPGVGLTAGVYAL 323
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17221.4025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FN84_ECTSI1.300e-554.76Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A6H5L0K3_9PHAE1.350e-554.76Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17221contigH-paniculata_contig17221:3909..4980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size214
Cds size189
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17221.4025.1prot_H-paniculata_contig17221.4025.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17221 3934..4980 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.495693-UTR-H-paniculata_contig17221:3908..39331622929358.495693-UTR-H-paniculata_contig17221:3908..3933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17221 3909..3933 +
1691480829.2866964-UTR-H-paniculata_contig17221:3908..39331691480829.2866964-UTR-H-paniculata_contig17221:3908..3933Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17221 3909..3933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.531685-CDS-H-paniculata_contig17221:3933..40361622929358.531685-CDS-H-paniculata_contig17221:3933..4036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17221 3934..4036 +
1691480829.2954288-CDS-H-paniculata_contig17221:3933..40361691480829.2954288-CDS-H-paniculata_contig17221:3933..4036Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17221 3934..4036 +
1622929358.5485826-CDS-H-paniculata_contig17221:4894..49801622929358.5485826-CDS-H-paniculata_contig17221:4894..4980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17221 4895..4980 +
1691480829.3066638-CDS-H-paniculata_contig17221:4894..49801691480829.3066638-CDS-H-paniculata_contig17221:4894..4980Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17221 4895..4980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17221.4025.1

>prot_H-paniculata_contig17221.4025.1 ID=prot_H-paniculata_contig17221.4025.1|Name=mRNA_H-paniculata_contig17221.4025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MVFAHSDGSVVFGCDCGQFHPGVTLKEGVFALQADPPTPAVSTASSPPSP
TERRGISCEAALE
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mRNA from alignment at H-paniculata_contig17221:3909..4980+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17221.4025.1 ID=mRNA_H-paniculata_contig17221.4025.1|Name=mRNA_H-paniculata_contig17221.4025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1072bp|location=Sequence derived from alignment at H-paniculata_contig17221:3909..4980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCTAAGTGTTTCCACGAGAATGACATGGTGTTTGCGCACAGCGACGGTT
CCGTCGTTTTCGGATGCGACTGCGGGCAGTTCCACCCTGGAGTCACCCTG
AAGGAAGGCGTGTTCGCGCTTCAAGCAGGTATGGGGAAAAAACAGGACAG
GCCGTTTCGGGAGCTTCTTTCTGTGTCTTTCACTTCCTCAACATTTACTT
TTTCAGACGTTGACTGGACGGTGTTGGTGTTACATTTTAATCGGTTTTGT
TCTATCTACGAGTATCCCTATTCATGAAAAATCCCTATTCATGAAAAAAT
TGGCTTAACAGTGAAGCGACTGCGGTAAATATCTCGTTATCATCTCGTTC
TACTGATTAATATTGCCTAACCATTATGAACACTACACATAGTCCACCAG
CAAAACATCAGAACGTGAACTCTTGAAACATCAACAATGAAGTCAACAAG
GTCCGAAACCTACAATTATAGATCAAACAAGCACATTTTCACTGTGTGAA
AGATCTGCGAAGTAAACTTGCCACGCTGCACGAGTCAAAAGTGAAACCTG
GTGGTGTTTTTACGTCACAAGCAATATACCTGACATAATGGAGCTCTATG
AGGTTCCGAAATATGTACATAAAATGTATTATCCGTACGTGAAGTTCGCC
CAAAATCTTTGCGAGTATCTACCACGATGTGTTTTGTACGTACAATATAT
ACCCGACTTGTGGGTCTTAAAAATGAAGTAGGTGCTACTACTGAAAATAT
ACCGCACATGTCGAAAGTGTGCAACATTAAACGCGCCCAGGGTTTGCGAT
AAGTCAGCACTGAAGATCCCAATTAATTTTTCCTTTTTCCTGTCTCCCGT
TCCTTCTCCTCTCCGTTGCATGTGTGGTGCTGCTCCTGCCACCGTCGATT
GTTTTCCCGGGCCACGGGGATCGGCGACACTGTTGGACCGTTGTCGTTTC
GACCATGACATCATGACGCTGCATGGCTGCAACCAGACCCCCCAACACCA
GCAGTATCGACAGCGTCCAGTCCTCCATCGCCGACTGAGAGGCGTGGAAT
ATCGTGCGAGGCTGCTTTGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig17221:3909..4980+

>mRNA_H-paniculata_contig17221.4025.1 ID=mRNA_H-paniculata_contig17221.4025.1|Name=mRNA_H-paniculata_contig17221.4025.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig17221:3909..4980+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGTTTGCGCACAGCGACGGTTCCGTCGTTTTCGGATGCGACTGCGG
GCAGTTCCACCCTGGAGTCACCCTGAAGGAAGGCGTGTTCGCGCTTCAAG
CAGATGGTGTTTGCGCACAGCGACGGTTCCGTCGTTTTCGGATGCGACTG
CGGGCAGTTCCACCCTGGAGTCACCCTGAAGGAAGGCGTGTTCGCGCTTC
AAGCAGACCCCCCAACACCAGCAGTATCGACAGCGTCCAGTCCTCCATCG
CCGACTGAGAGGCGTGGAATATCGTGCGAGGCTGCTTTGGAGACCCCCCA
ACACCAGCAGTATCGACAGCGTCCAGTCCTCCATCGCCGACTGAGAGGCG
TGGAATATCGTGCGAGGCTGCTTTGGAG
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