mRNA_H-paniculata_contig17212.4021.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17212.4021.1
Unique NamemRNA_H-paniculata_contig17212.4021.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig17212.4021.1 vs. uniprot
Match: D8LN20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN20_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 3.270e-8
Identity = 37/64 (57.81%), Postives = 41/64 (64.06%), Query Frame = 1 
Query:   16 RGLKPERSAQAKSDFRYTLPTDYPFSFSTSSNYTHDFNSVDGMSMFSTASSVVNPSSVRGIVHR 207
            RGLKPER     S F+Y L  D   S S SS Y     ++D MS+FS ASSVVNP SVRGIVHR
Sbjct:    9 RGLKPERMEPPPSMFKYQLEGD---SISGSSYYDPYSVTMDNMSVFSAASSVVNPQSVRGIVHR 69
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17212.4021.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LN20_ECTSI3.270e-857.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17212contigH-paniculata_contig17212:4337..5584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-13_002150.1
Exons2
Model size210
Cds size210
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929358.0851097-CDS-H-paniculata_contig17212:4336..44031622929358.0851097-CDS-H-paniculata_contig17212:4336..4403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17212 4337..4403 +
1691480829.090178-CDS-H-paniculata_contig17212:4336..44031691480829.090178-CDS-H-paniculata_contig17212:4336..4403Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17212 4337..4403 +
1622929358.1013222-CDS-H-paniculata_contig17212:5441..55841622929358.1013222-CDS-H-paniculata_contig17212:5441..5584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17212 5442..5584 +
1691480829.099061-CDS-H-paniculata_contig17212:5441..55841691480829.099061-CDS-H-paniculata_contig17212:5441..5584Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17212 5442..5584 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17212.4021.1prot_H-paniculata_contig17212.4021.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17212 4337..5584 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17212.4021.1

>prot_H-paniculata_contig17212.4021.1 ID=prot_H-paniculata_contig17212.4021.1|Name=mRNA_H-paniculata_contig17212.4021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=70bp
MPFFTRGLKPERSAQAKSDFRYTLPTDYPFSFSTSSNYTHDFNSVDGMSM
FSTASSVVNPSSVRGIVHR*
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mRNA from alignment at H-paniculata_contig17212:4337..5584+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17212.4021.1 ID=mRNA_H-paniculata_contig17212.4021.1|Name=mRNA_H-paniculata_contig17212.4021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1248bp|location=Sequence derived from alignment at H-paniculata_contig17212:4337..5584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTTTTTCACGAGAGGACTCAAGCCAGAGCGTTCAGCGCAGGCCAA
GAGCGATTTCCGATACAGTAAGTTTTTTTTAAAATTATTTTGCGAATTTA
TTTTTCAAGGTTTTACAGTAGAATAAACTAATATGTTTACAGTCACTTGC
AAGGGACTGTTTTGTGTGCTCTTGTCATTTTGGACAGTGAACGAGCCTCA
CAGTTTCGAATACCAGCTGCCTATCTGCGGCAGCGTCCTGTATCGTTGTG
TTCTGATCTTATGTGTTCTGTTGTAAACAGCTCACCCTTTTGAGGCACCA
ACGCTCTGGTTTTTGGCACCCAGAGTTTTTGCTGTTAGGACGCTCCCGAA
GAACTGGAGAAAAAATTCTGATTGTCAACACCGCCGGGATGTAAACCATG
GACGATGATTGGAGAAGTACTCCGTCCTGAAGGGGTTGAGACGTTATCTC
ACTAAGAGTCATCCTACGGGGTTGAAGTGTTGAAACGGATTTTGCTTAGC
AAAAAAAGCGCTGCAAAAGTCACGCGAATCAAAACCGTGTCATCTGCATT
TGTTTGTGCATCCCTTAAGGTGCATAGTCCATGAGTTGAGATGGGATTTC
TCTTTTAAGGGGGGGGCAACCAATGTAATATATATATGTATACATAAGCC
CGATCACGTTCCGAAAGCGGCTGGATCTTTTAAACGAAGCGGCTCAAATA
TCCTCCCACTCCTTTACCATAGCATGACTCCCAAGTGCCGAAATAAAATA
AAAATGGTCTGGAACTGAAGAAGAGAAAGGATGTACTCGGTGAGTATTTT
TTTACCGGATTTGTACCCCGAACGAGGGAAAAGTCGTCCTCTAACAGGTC
TCATAATTTGGTGTGGCTGTTGTTGCTATGGCTCTCTGTTTCGCTTCTGC
TTGGTGTGGTGCCTTGATGACCGAACCGGAGAACCAATTTCGTCCCAGTG
CGAAGAAATGGATTAAGTAAAGTGGTCCTGAAGCTGTGTCTGAAGTTGCC
TAGTATGTATACTAATGCCGTTGTCTCATTTTTGTTAATGGTTGAGTGAT
GTGTTTCGTATGTTTGCGTGTGTTTCTCTCGTGGTATGTATTTGTTATTG
TCCAGCGTTACCTACCGATTACCCGTTCAGCTTCTCCACAAGTTCTAACT
ACACGCACGACTTCAACAGCGTGGATGGCATGAGCATGTTCAGCACGGCC
AGCTCCGTGGTGAACCCTTCGTCTGTCAGAGGAATCGTGCACAGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig17212:4337..5584+

>mRNA_H-paniculata_contig17212.4021.1 ID=mRNA_H-paniculata_contig17212.4021.1|Name=mRNA_H-paniculata_contig17212.4021.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at H-paniculata_contig17212:4337..5584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGTTTTTCACGAGAGGACTCAAGCCAGAGCGTTCAGCGCAGGCCAA
GAGCGATTTCCGATACAATGCCGTTTTTCACGAGAGGACTCAAGCCAGAG
CGTTCAGCGCAGGCCAAGAGCGATTTCCGATACACGTTACCTACCGATTA
CCCGTTCAGCTTCTCCACAAGTTCTAACTACACGCACGACTTCAACAGCG
TGGATGGCATGAGCATGTTCAGCACGGCCAGCTCCGTGGTGAACCCTTCG
TCTGTCAGAGGAATCGTGCACAGGTGACGTTACCTACCGATTACCCGTTC
AGCTTCTCCACAAGTTCTAACTACACGCACGACTTCAACAGCGTGGATGG
CATGAGCATGTTCAGCACGGCCAGCTCCGTGGTGAACCCTTCGTCTGTCA
GAGGAATCGTGCACAGGTGA
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