mRNA_H-paniculata_contig1721.4019.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1721.4019.1
Unique NamemRNA_H-paniculata_contig1721.4019.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: A0A6H5KNV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNV1_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 9.980e-71
Identity = 164/407 (40.29%), Postives = 215/407 (52.83%), Query Frame = 1
Query:  394 CFEKLLPLDVNNDSLERTLRRDAELIDVPDEAETFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGR--------DRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVEGRLRRAFLSYPSLFKHLAFDGRFLHGVPEIMTRKYSSRRVDSRSRSQQYPMERHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQKRARGRMRVTLLVNVWLSHKPLEIAPLPQAIAAMLSRAPDLPVLNFDHPVMFSPVRLPVNDAVSNGDDSDRGV---ALTATVAVKMALGTATFLEMCVPRSETMSEGKRRGLHAFLLQLEDGFRARISGV 1581
            C+E+++ +     +L+  L RD ELID P EA+TFW+ +DA P T+LE+IAKA++DFHVAN    T  H+ S L G            GN P+ +       +AS    G         SGAEWW+Q REEG H+ +GMPFHWDKDE + E  G++  P VSTVTYLT +GAPT+VLE+ AT  G V EG + + F+SYP+LFKHLAFDG FLHGVPE + R    R      R                G       G       +     +S G +R +GRMRVT LVNVWLSHKP  I  LP  +A  LS    +P L FD P  F PV +          + D G       +++ + + LG    LE+  P  E +S G  +   +F L   +G  +RIS V
Sbjct:    4 CYERVMGM-----TLQDALLRDVELIDNPHEAKTFWLPADACPATSLERIAKAIYDFHVANKQ-HTHGHQDSALTGPVGSTPSAVAHSGNIPSRDKPGVVRRDASSHTGG-------VESGAEWWVQQREEGRHASVGMPFHWDKDEEMLEQEGLVVCPSVSTVTYLTGYGAPTVVLEARATGSGTVQEGDINQTFVSYPALFKHLAFDGGFLHGVPEQLMRTGDQRVSGKVGRD---------------GGRREARGGNDNHGIRSRTSLPSSNGTRRRQGRMRVTFLVNVWLSHKPKGITSLPADVAGSLSNI-SVP-LCFDRPGDFVPVPVEKEQETQPSQEEDGGSIRGTKPSSMLLNVPLGPTLLLEVRAPTPERLSTGGFKENDSFALVYAEGSHSRISTV 380          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: D7G6Z0_ECTSI (Putative LuxR domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6Z0_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 4.060e-52
Identity = 110/229 (48.03%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  394 CFEKLLPLDVNNDSLERTLRRDAELIDVPDEAETFWVSSDAQPTTALEKIAKAVFDFHVANL------------PV---PTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVEGRLRRAFLSYPSLFKHLAFDGRFLHGVPEIMTR 1035
            C+E++L       + +  L RD ELID P EA+TFW+ +DA P T+LEKIAKA+FDFHVAN             PV   P+ +     +P RD+ G      S      E                SGAEWW+Q REEG H+ LGMPFHWDKDE++ E  G++  P VSTVTYLT +GAPT+VLE+ AT    V EG + + F+SYP+LFKHLAFDG FLHGVPE + R
Sbjct:    4 CYERVL-----GTTRQDALLRDVELIDNPHEAKTFWLPADACPATSLEKIAKAIFDFHVANKQHIGQQDSAPTGPVGSTPSAVAHGENIPCRDKPGVVRRDTSSRTGCVE----------------SGAEWWVQQREEGRHASLGMPFHWDKDEQMLEQEGLVVCPAVSTVTYLTGYGAPTVVLEARATGSRTVEEGDINQTFVSYPALFKHLAFDGGFLHGVPEQLMR 211          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: A0A7R9TJB1_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9TJB1_MICPS)

HSP 1 Score: 121 bits (303), Expect = 2.150e-26
Identity = 109/344 (31.69%), Postives = 145/344 (42.15%), Query Frame = 1
Query:  322 ASVRDDSTNTITGSKLPAVQFDTCCFEKLLPLDVNNDSLE-------RTLRRDAELIDVPDEAETFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVEG---RLRRAFLSYPSLFKHLAFDGRFLHGVPEIMTRKYSSRRVDSRSRSQQYPMERHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQKRARGRMRVTLLVNVWLSHKPLEIAPLPQAIAAMLSRAPDL 1323
            ASV  D+   + G+   A+ F    F + L L  ++D+ +       + L RDA    V    E+FW+++DA P  ALE +A+AVFD HV           + VL    +            N  EA  GD     G      GAEWW Q+R         + FHWDKDE L +  GV+ +P +STVTYLT  GAPT+VLE  A       +G    +   F+SYP   KH++FDGRFLHG    + R                      D E+G+                                  RVT LVNVWL +KP  I   P+     L+ AP L
Sbjct:    8 ASVAIDANGRVAGAD--ALDFSFRSFPRFLLLRDDDDAGDPRDGFRAKALLRDATRAFV---GESFWLAADAAPRCALESLARAVFDRHVP----------ADVLRAFQQ-----------TNADEARFGDGRFGGG-----CGAEWWTQVRRVDDECREAVAFHWDKDEDLVDDFGVVVHPLISTVTYLTSSGAPTVVLEKTAPTSYAETDGFRGSIAGGFVSYPLAGKHVSFDGRFLHGASRELARPT--------------------DVEEGY---------------------------------ERVTFLVNVWLGYKPRGIDAFPEEAFDALTPAPAL 267          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: A0A7S1E7H6_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1E7H6_HEMAN)

HSP 1 Score: 114 bits (285), Expect = 2.010e-25
Identity = 64/182 (35.16%), Postives = 90/182 (49.45%), Query Frame = 1
Query:  487 AETFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVEGRLRRAFLSYPSLFKHLAFDGRFLHGVP-EIM 1029
            A++FW+S+ A+P   LE++A+ VFD H   L  P                                         ++   SGAEWW+  R         + FHWD+DE   + T    +P V+TVTYL+EHGAPTM+LE     +G   E  ++ A+LS+P   KH++FDGR LHGVP E+M
Sbjct:   20 AQSFWLSASAEPRFTLERMARHVFDLHTRGLAKP-----------------------------------------FDPKTSGAEWWVHFRGPSARDGEAIGFHWDRDEVYADVTHQNVHPHVATVTYLSEHGAPTMILEQLPISKG---ESTVQAAYLSHPKFGKHVSFDGRLLHGVPPELM 157          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: A0A7S0LWM3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LWM3_9CRYP)

HSP 1 Score: 116 bits (290), Expect = 3.550e-25
Identity = 79/276 (28.62%), Postives = 116/276 (42.03%), Query Frame = 1
Query:  493 TFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVEGRLRRAFLSYPSLFKHLAFDGRFLHGVP-EIMTRKYSSRRVDSRSRSQQYPMERHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQKRARGRMRVTLLVNVWLSHKPLEIAPLPQAIAAMLSRAP 1317
            ++W+++DA P  +LE +A+AVF++H A L            PG                              Y+ A +GAEWW+  R         + FHWD+DE   +      +P+++TVTYL++HGAPTM+LE      G     R   A+LS+P L KH +FDGR LHGVP E+M                                                        Q R  G  R+T LVN+W++H+ L   P P + A+++S +P
Sbjct:   70 SYWLAADAAPRFSLEWLARAVFEYHTARLG-----------PGD-----------------------------YDPARTGAEWWVHFRGPAAADGEAIGFHWDRDEYYADAAKQNVHPQIATVTYLSDHGAPTMILEQVPIAPGRTATPRT--AYLSHPRLGKHASFDGRLLHGVPPELMVP------------------------------------------------------QARKAGYTRITFLVNIWVNHRLLNTEPWPDSDASLISPSP 249          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: A0A7S0EVP4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0EVP4_9CRYP)

HSP 1 Score: 112 bits (280), Expect = 8.920e-25
Identity = 75/266 (28.20%), Postives = 105/266 (39.47%), Query Frame = 1
Query:  493 TFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVEGR-LRRAFLSYPSLFKHLAFDGRFLHGVPEIMTRKYSSRRVDSRSRSQQYPMERHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQKRARGRMRVTLLVNVWLSHKPLEIAPLPQ 1287
            +FW+ ++  P   LE +AK +F+FH AN+                                           GY+   SGAEWW+Q R         + FHWD+DE   + T    +P++ TVTYL++HGAPT+VL+     +G   E R +    LS+P L KH+ FDGRFLHGVP  ++R                                                              R+T LVNVW+SH P + AP P+
Sbjct:   23 SFWLPANQTPRFTLEMLAKRIFEFHTANVK------------------------------------------GYDATKSGAEWWVQFRGSKSAHGKSIGFHWDRDEFYADRTDQNVHPQIGTVTYLSKHGAPTLVLDQIPIPKG---ESRDIHSGALSHPKLGKHICFDGRFLHGVPAELSRHLKDDNFT------------------------------------------------------RITFLVNVWISHIPTDTAPWPE 189          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: L1JH63_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JH63_GUITC)

HSP 1 Score: 117 bits (293), Expect = 9.710e-25
Identity = 84/301 (27.91%), Postives = 121/301 (40.20%), Query Frame = 1
Query:  493 TFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVEGR-LRRAFLSYPSLFKHLAFDGRFLHGVPEIMTRKYSSRRVDSRSRSQQYPMERHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQKRARGRMRVTLLVNVWLSHKPLEIAPLPQAIAAMLSRAPDLPVLNFDHPVMFSPVRLPVNDAVS 1392
            +FW++++A+P   LE +AK +F+FH A++                                           GY+   SGAEWW+Q R         + FHWD+DE   + T    +P++ TVTYL+EHGAPT+VL+     +G   E R +    LS+P L KH+ FDGRFLHGVP  ++R     +                                                        R+T LVN+W+SH P + AP P+     +S         F  PV FS + L    AV+
Sbjct:  129 SFWLAANAKPRFTLEALAKQIFEFHTADVK------------------------------------------GYDETRSGAEWWVQFRGTKSAHGKSIGFHWDRDEFYADRTDQNVHPQIGTVTYLSEHGAPTLVLDQSPIPKG---ESRDIHSGALSHPKLGKHICFDGRFLHGVPAELSRHLKEDQFT------------------------------------------------------RITFLVNIWISHIPTDTAPWPEEDVKSMS--------TFSLPVSFSQILLRSPTAVT 322          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: C1EIM3_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1EIM3_MICCC)

HSP 1 Score: 115 bits (289), Expect = 5.150e-24
Identity = 80/269 (29.74%), Postives = 116/269 (43.12%), Query Frame = 1
Query:  490 ETFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVE---GRLRRAFLSYPSLFKHLAFDGRFLHGVPEIMTRKYSSRRVDSRSRSQQYPMERHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQKRARGRMRVTLLVNVWLSHKPLEIAPLPQ 1287
            E+FW+++ ++P  ALE++A+ VF+ HVA +                 DG                         ++ A SGAEWW+Q+R E       + FHWDKDE L +  GV  +P +STVTYLT  GAPT+VL+         VE   G + + +LS+P   KH+AFDGR LHG P  + +                   RH +                                   +G  RV+ LVN+WL+++P  I P P+
Sbjct:  117 ESFWLAAGSEPRCALEELARKVFELHVAGI-----------------DGT------------------------WDAAKSGAEWWVQVRHEDDGQKEAVSFHWDKDEDLVDDFGVNVHPAISTVTYLTTSGAPTLVLDHVPPMMYEDVEQFRGPVGQGYLSFPKRGKHIAFDGRLLHGAPRELAKP------------------RHVE-----------------------------------KGYERVSFLVNIWLNYRPRAIEPFPE 291          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: A0A7S4QU38_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QU38_9STRA)

HSP 1 Score: 111 bits (278), Expect = 7.970e-23
Identity = 84/291 (28.87%), Postives = 120/291 (41.24%), Query Frame = 1
Query:  493 TFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFS---GAEWWIQIR---------EEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQGVVVEGR---LRRAFLSYPSLFKHLAFDGRFLHGVPEIMTRKYSSRRVDSRSRSQQYPMERHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQKRARGRMRVTLLVNVWLSHKPLEIAPLPQAIAAMLSRAPD 1320
            TFW+S+  +P   LEK+AK +F  H   +                 + N  +  +K  + G+             + FS   G EWW+Q+R              +  G+ FHWDKDE LR+   V  +P +STVTYLT++GAPT+V E     + ++ +     ++ AF+S+P   KHL+FDGR LHG P  + R                                           S+E D             +RVT LVN+WL HKPL I   P+A     S   D
Sbjct:   66 TFWLSARDEPRCLLEKLAKDIFAHHAVVV----------------MNNNKGSKRAKNHHLGD-------------MEFSNACGCEWWVQLRPSPNQKRINSNSKEAQRGIQFHWDKDETLRDVADVFVHPHLSTVTYLTDNGAPTLVFEESMPNERLLDKTAGTGIKGAFVSWPLRGKHLSFDGRLLHGAPSDLLR-------------------------------------------SSETD------------ELRVTFLVNIWLYHKPLGIEKFPEAFLGRFSCVDD 272          
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Match: A0A7S3Z950_9EUKA (Hypothetical protein n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z950_9EUKA)

HSP 1 Score: 112 bits (279), Expect = 8.000e-23
Identity = 100/335 (29.85%), Postives = 150/335 (44.78%), Query Frame = 1
Query:  307 NERDYASVRDDSTNTITGSKLPAVQFDTCCFEKLLPLDVNNDSLERTLRRD------AELIDVPDE---AETFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHRSSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQIREEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLESCATEQ--GVVVEGRLRRAFLSYPSLFKHLAFDGRFLHGVPEIMTRKYSSRRVDSRSRSQQYPME-----RHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQKRARGRMRVTLLVNVWLSHKP 1263
            ++ ++  V  D    I G     + +D   FE +   D    SL   ++RD      A+  D   E     TFW++S+ +P   LE+IAKA+F+ H                                  TG  +DG    +P      SGAE+W    E G      + +HWDKD    E+ G+  +P V+TVTYLT+ GAPTM LE        G  + G +++ +LS+P + KH++FDGR+LHG P+ +T  +S    DSR  +++   +     R+P   + H A +     R +T     V               R+T LVNVWL+HKP
Sbjct:    6 SDDEHVEVCLDEHGRIGGFSSCGISYDFRAFEAINRSDA---SLISKIKRDCVKSFSAQSSDSSGEYSAGHTFWIASNDKPKCLLEQIAKAIFEQH----------------------------------TGAVTDGSKNHTP-LIAETSGAEFWSLCMESGD----AVGWHWDKDYAT-ESDGLNIHPHVATVTYLTDVGAPTMFLEKTVGSPIVGHSIAGPIKKGYLSWPQVGKHVSFDGRWLHGAPDELTDAFSRSNEDSRDSAEKEDTKSAKKRRNPPRSKKHQAKK----SRKSTARLTSVP-------------QRITFLVNVWLNHKP 280          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1721.4019.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KNV1_9PHAE9.980e-7140.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6Z0_ECTSI4.060e-5248.03Putative LuxR domain protein n=1 Tax=Ectocarpus si... [more]
A0A7R9TJB1_MICPS2.150e-2631.69Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S1E7H6_HEMAN2.010e-2535.16Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0LWM3_9CRYP3.550e-2528.62Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0EVP4_9CRYP8.920e-2528.20Hypothetical protein (Fragment) n=1 Tax=Hanusia ph... [more]
L1JH63_GUITC9.710e-2527.91Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
C1EIM3_MICCC5.150e-2429.74Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A7S4QU38_9STRA7.970e-2328.87Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S3Z950_9EUKA8.000e-2329.85Hypothetical protein n=1 Tax=Lotharella globosa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1721contigH-paniculata_contig1721:12110..15968 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue1e-45
Seed eggNOG ortholog2880.D7G6Z0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E8EV@1,2SEXB@2759
Ec32 ortholog descriptionputative LuxR domain protein
Ec32 orthologEc-01_011710.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size2231
Cds size1518
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1721.4019.1prot_H-paniculata_contig1721.4019.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1721 12520..15665 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.7727778-UTR-H-paniculata_contig1721:12109..125191622929357.7727778-UTR-H-paniculata_contig1721:12109..12519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 12110..12519 -
1691480828.945204-UTR-H-paniculata_contig1721:12109..125191691480828.945204-UTR-H-paniculata_contig1721:12109..12519Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 12110..12519 -
1622929357.845059-UTR-H-paniculata_contig1721:15665..159681622929357.845059-UTR-H-paniculata_contig1721:15665..15968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 15666..15968 -
1691480829.0074499-UTR-H-paniculata_contig1721:15665..159681691480829.0074499-UTR-H-paniculata_contig1721:15665..15968Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 15666..15968 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.789472-CDS-H-paniculata_contig1721:12519..131371622929357.789472-CDS-H-paniculata_contig1721:12519..13137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 12520..13137 -
1691480828.9586084-CDS-H-paniculata_contig1721:12519..131371691480828.9586084-CDS-H-paniculata_contig1721:12519..13137Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 12520..13137 -
1622929357.8050663-CDS-H-paniculata_contig1721:13868..141681622929357.8050663-CDS-H-paniculata_contig1721:13868..14168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 13869..14168 -
1691480828.9680948-CDS-H-paniculata_contig1721:13868..141681691480828.9680948-CDS-H-paniculata_contig1721:13868..14168Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 13869..14168 -
1622929357.8155944-CDS-H-paniculata_contig1721:14401..148181622929357.8155944-CDS-H-paniculata_contig1721:14401..14818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 14402..14818 -
1691480828.9840834-CDS-H-paniculata_contig1721:14401..148181691480828.9840834-CDS-H-paniculata_contig1721:14401..14818Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 14402..14818 -
1622929357.8316767-CDS-H-paniculata_contig1721:15482..156651622929357.8316767-CDS-H-paniculata_contig1721:15482..15665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 15483..15665 -
1691480828.9981284-CDS-H-paniculata_contig1721:15482..156651691480828.9981284-CDS-H-paniculata_contig1721:15482..15665Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 15483..15665 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1721.4019.1

>prot_H-paniculata_contig1721.4019.1 ID=prot_H-paniculata_contig1721.4019.1|Name=mRNA_H-paniculata_contig1721.4019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=506bp
MNERDYASVRDDSTNTITGSKLPAVQFDTCCFEKLLPLDVNNDSLERTLR
RDAELIDVPDEAETFWVSSDAQPTTALEKIAKAVFDFHVANLPVPTLLHR
SSVLPGRDRDGNTPTSNSKAKNTGEASDGDNGKSPGYELAFSGAEWWIQI
REEGYHSDLGMPFHWDKDERLRETTGVMKYPEVSTVTYLTEHGAPTMVLE
SCATEQGVVVEGRLRRAFLSYPSLFKHLAFDGRFLHGVPEIMTRKYSSRR
VDSRSRSQQYPMERHPDPEQGHGALEPGSSGRSATLASAEVDSAASCGQK
RARGRMRVTLLVNVWLSHKPLEIAPLPQAIAAMLSRAPDLPVLNFDHPVM
FSPVRLPVNDAVSNGDDSDRGVALTATVAVKMALGTATFLEMCVPRSETM
SEGKRRGLHAFLLQLEDGFRARISGVGRNSSCGSQVRRDADLISCPAQGF
DENRACLEEQVGFLAEEHHDHLGSNRRWEGLTVDMTANGAREKQDDTAKR
KRDIT*
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mRNA from alignment at H-paniculata_contig1721:12110..15968-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1721.4019.1 ID=mRNA_H-paniculata_contig1721.4019.1|Name=mRNA_H-paniculata_contig1721.4019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3859bp|location=Sequence derived from alignment at H-paniculata_contig1721:12110..15968- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCTGCATGGTTGCAGCTTTTAGTACTACGAGGAGCGCAGGGGCGTGAT ACGAGGGAAGCCGTACCTGAGGCACTTACCTTTTAGTCTGATTTTTGTAG CTAAAAGTGGGGTAACTGATAACTTTCTATAAGTTCGATCTTAACAGGAC ATTGTGTTCCTGCTTTCACTCATCTAGCTGGAGGGGAGGGGTGTGTAAAT ATCCTCCCCGTTCTAAGCACAGGGGACAACAATACGGTGGGCCGGATACT ACTAGAGTTGTCGCTCTCGTAACGCACACCCATTCCTTGAAGAGGCGCTT GGTATGAATGAACGAGACTATGCCAGTGTCAGAGACGACTCCACCAACAC TATTACAGGTTCAAAACTGCCAGCGGTCCAATTCGACACATGCTGCTTCG AGAAGTTGCTTCCACTCGATGTGAACAACGACTCACTAGAGCGCACACTT CGCCGTGATGCTGAGCTGATCGATGTTCCCGACGAGGTAAGGTCGTCAGG TTTGAGAGTCAATTTTTTGTAGCGCAAAGAGATATGATGGCGTTGGGCAG TACTGCGTATATACTCGTTTGCCTCATGCTTTTGTTTCGCTGCGGCACAC ACACGAGAGAGGGCTGTTTAGAATGAGCCCGTACGTAGCAGCTACCGCAC CACTTCGGGATCCTGTGGTTCTTACCGTTGAAGCCTCTTCTTAATTTTTT ACTTGATCTGTATCTGCGGTAGCTCCTGCTGTGAAGATCTCACATGTACA ACATGCTAGAGGGTTATGAAGGCGTTTCAGGCATCTTGCGGTGTAGACCC AACTGTGATAACATGGTTTTGTACTACGCACACGATTCCCACTTCAAACA TCCGATGTTTGCTGTACATACACACATGTTGAGTGGAGTACTTTTCCTAA AGCCCTGAAGACGATGTTCCAGAACCTGCCTTTTCCTGTCTCATGCATAA ATTCACGTCTTGTTCAGCCTCAGGCCACAATATACGCATGCTCCGGACAA GCTCCGGGGTTCAGTGAATCGTATATATGATATCCACAGCCTCCATGCCA CTGTCGCCCCTGGGAATATGAGGAGTCTTCTGAGTACAGGTAGGGCCGAT TATCTTGACCGTTAGCTGTGCCTGAACTTGCCACATTGACATTTGCGCAG GCGGAGACTTTTTGGGTTTCTTCTGATGCGCAGCCCACGACCGCTCTCGA GAAAATAGCCAAGGCAGTATTCGACTTTCACGTGGCCAACCTTCCTGTTC CAACACTCCTCCATCGCTCCTCGGTTTTACCAGGCAGAGATCGTGACGGC AACACTCCAACTTCAAACAGCAAGGCGAAGAACACAGGCGAAGCGAGCGA CGGCGACAATGGCAAGAGCCCCGGGTATGAGCTAGCGTTCTCCGGGGCGG AATGGTGGATACAGATACGGGAGGAAGGGTATCACTCTGATCTAGGGATG CCATTTCACTGGGATAAAGACGAACGACTGAGAGAGACGACGGGGGTGAT GAAATATCCTGAGGTGTCCACCGTTACGTACCTGACTGAGCACGGTGCCC CAACGATGGTTCTTGAGGTGCGCTTGCACTGAACTCCAAATGAGTTAGAC TCTACCATCGTCATTGTTTTAGGACCCTTTTAACGCGTTGCACTTGTCGC ATCCACCACCCCGGCCTCCACCGATAGTCCACGCAAACCCTGCCCGATTT CACGTAGAAGTGTTTCGTTTGGATTTGTCGATAGTGCTGCCCGATGAGGC TCAATCCTTGCTCTTACATTCACACGCCACTCTTCCATGTCCATTAACAG TCATGTGCCACAGAGCAAGGAGTGGTGGTAGAGGGACGTCTACGCCGGGC GTTCCTGAGCTACCCATCGCTGTTCAAGCACCTTGCCTTTGATGGCAGGT TTCTGCATGGAGTCCCGGAAATCATGACAAGGAAATACTCGAGCAGGCGG GTTGATAGCCGATCGAGGAGTCAGCAATACCCAATGGAAAGACACCCTGA CCCGGAGCAGGGTCACGGGGCACTTGAACCAGGGAGCAGTGGACGAAGTG CAACCCTTGCTAGTGCTGAGGTTGACAGTGCAGCATCCTGTGGACAAAAG GTGAGCTTCTGGCGTTTGTTTTTCTTATGGTAAGGCAGCAGGCTCAACCT TGTCGGTGGGCGCGAAGCCCAGTATGGCGTTACGAGTCCAGTTGATGTTT TTCGTTTTTTTGTCACTTACTTTCCCCCTAATTTCTGTGGCATAGCCCTA CCTAGCCATCGAACCAGACCAGGGTTTAGTTGTGACCTTGTCCCTTCGCC GCCGTCCCTCGGCAAGACCAGTTCAGCCCCGATTGTCGCTCTTTTTCTCT AGTGTTTTCATGAAAAGTAAATGCCTTGGTACCGTTGATGGCTGAATGCT CAACTGTAGACGGTCTCTAACCAGTGTCTTCCAGCGCGGTTTTCTCGATG GAGAGATGACAGCGTATGCATTTGTGGCGCCACGCCCGAAAGGGTAGGTT GGATATTCGTTACCCGTCCCAAGGCTCCTGTCTTCTCACGATAATTTTCT TTCCTCATTATTCTCTGGGGCAAACGGCGTTGGCTGTATTGTCGACTCTT AAAATTTCCGCACCCGAGGAGTTGCCATTGGTCCTGCCCTGCACGCGGCC ACCTCTTCTCGAATATCTCATCAAAGCAAGATATAATGTCGTGCACTCCT GTACATACCCACACTGTTTTCGGTGCCTTTATCTTCGCACCTTGAATAAT TGTGCTCATACAATCTCGTCGTGTGTTGCCTCGATTTGACTCTGGCTCTG GTGCGGGGCATTTACTACGGAACGACTCCAGCGAGCGCGAGGTCGGATGA GAGTAACCCTTCTTGTCAATGTTTGGCTATCCCACAAGCCGCTCGAAATA GCACCGCTACCGCAAGCAATCGCCGCGATGCTTAGCAGAGCTCCGGATCT CCCTGTACTGAACTTTGACCACCCGGTCATGTTTTCTCCAGTGAGGTTAC CAGTCAACGATGCAGTGAGCAATGGTGACGATAGTGATCGTGGGGTTGCG TTGACGGCAACTGTGGCAGTGAAGATGGCATTGGGCACTGCAACGTTCCT CGAAATGTGTGTGCCACGGAGCGAGACAATGTCAGAAGGGAAAAGGAGAG GTCTTCACGCGTTTCTTTTGCAACTTGAAGACGGGTTTCGTGCACGTATT TCAGGTGTTGGCAGGAATAGTAGTTGTGGCAGTCAAGTGCGGAGAGATGC GGATCTTATATCATGCCCGGCCCAGGGATTCGATGAAAATAGAGCTTGCC TGGAAGAGCAAGTCGGCTTTCTTGCAGAGGAGCATCACGACCATCTCGGA TCGAACCGCCGCTGGGAAGGCCTTACAGTAGACATGACGGCTAACGGGGC GCGAGAGAAACAGGACGACACCGCCAAAAGAAAACGGGATATTACATGAA TACACGATAATATGTTTTTCTCCTGCCATACTACGTACGTACCGTACGTG AGTGAAATAAGAGCGTACTGCATAGACCGAACACCAATTAAGTTGCCATG TTTACACGGCCCCCCCGTGGCGCGCCGATTTTCTTTTGGGGGTTTGCCGC AAATGTCGTGAGTGTGAGTGGCAGCCGTTGATTCTACGCAACGCGGAAGG TGTTGAGCCAGTCGAGTCAAGAGCCGTGATTTGAAGCATGACTTAAGGCA AAGATAAATCATATTTACTCGAAACAACTTGCTGAAAAGTCGTGCGAGTA TGAAGATAACACACCCATACCATCTTCTTTGTCTTGGAGTTTATAGTCAG ACGCCGCAAGGACGCGTCACACCACTTCATGTGTGCGTCACACACCTCCA TTCGTCCCC
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Coding sequence (CDS) from alignment at H-paniculata_contig1721:12110..15968-

>mRNA_H-paniculata_contig1721.4019.1 ID=mRNA_H-paniculata_contig1721.4019.1|Name=mRNA_H-paniculata_contig1721.4019.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3036bp|location=Sequence derived from alignment at H-paniculata_contig1721:12110..15968- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAATGAACGAGACTATGCCAGTGTCAGAGACGACTCCACCAACACTAT
TACAGGTTCAAAACTGCCAGCGGTCCAATTCGACACATGCTGCTTCGAGA
AGTTGCTTCCACTCGATGTGAACAACGACTCACTAGAGCGCACACTTCGC
CGTGATGCTGAGCTGATCGATGTTCCCGACGAGATGAATGAACGAGACTA
TGCCAGTGTCAGAGACGACTCCACCAACACTATTACAGGTTCAAAACTGC
CAGCGGTCCAATTCGACACATGCTGCTTCGAGAAGTTGCTTCCACTCGAT
GTGAACAACGACTCACTAGAGCGCACACTTCGCCGTGATGCTGAGCTGAT
CGATGTTCCCGACGAGGCGGAGACTTTTTGGGTTTCTTCTGATGCGCAGC
CCACGACCGCTCTCGAGAAAATAGCCAAGGCAGTATTCGACTTTCACGTG
GCCAACCTTCCTGTTCCAACACTCCTCCATCGCTCCTCGGTTTTACCAGG
CAGAGATCGTGACGGCAACACTCCAACTTCAAACAGCAAGGCGAAGAACA
CAGGCGAAGCGAGCGACGGCGACAATGGCAAGAGCCCCGGGTATGAGCTA
GCGTTCTCCGGGGCGGAATGGTGGATACAGATACGGGAGGAAGGGTATCA
CTCTGATCTAGGGATGCCATTTCACTGGGATAAAGACGAACGACTGAGAG
AGACGACGGGGGTGATGAAATATCCTGAGGTGTCCACCGTTACGTACCTG
ACTGAGCACGGTGCCCCAACGATGGTTCTTGAGGCGGAGACTTTTTGGGT
TTCTTCTGATGCGCAGCCCACGACCGCTCTCGAGAAAATAGCCAAGGCAG
TATTCGACTTTCACGTGGCCAACCTTCCTGTTCCAACACTCCTCCATCGC
TCCTCGGTTTTACCAGGCAGAGATCGTGACGGCAACACTCCAACTTCAAA
CAGCAAGGCGAAGAACACAGGCGAAGCGAGCGACGGCGACAATGGCAAGA
GCCCCGGGTATGAGCTAGCGTTCTCCGGGGCGGAATGGTGGATACAGATA
CGGGAGGAAGGGTATCACTCTGATCTAGGGATGCCATTTCACTGGGATAA
AGACGAACGACTGAGAGAGACGACGGGGGTGATGAAATATCCTGAGGTGT
CCACCGTTACGTACCTGACTGAGCACGGTGCCCCAACGATGGTTCTTGAG
TCATGTGCCACAGAGCAAGGAGTGGTGGTAGAGGGACGTCTACGCCGGGC
GTTCCTGAGCTACCCATCGCTGTTCAAGCACCTTGCCTTTGATGGCAGGT
TTCTGCATGGAGTCCCGGAAATCATGACAAGGAAATACTCGAGCAGGCGG
GTTGATAGCCGATCGAGGAGTCAGCAATACCCAATGGAAAGACACCCTGA
CCCGGAGCAGGGTCACGGGGCACTTGAACCAGGGAGCAGTGGACGAAGTG
CAACCCTTGCTAGTGCTGAGGTTGACAGTGCAGCATCCTGTGGACAAAAG
TCATGTGCCACAGAGCAAGGAGTGGTGGTAGAGGGACGTCTACGCCGGGC
GTTCCTGAGCTACCCATCGCTGTTCAAGCACCTTGCCTTTGATGGCAGGT
TTCTGCATGGAGTCCCGGAAATCATGACAAGGAAATACTCGAGCAGGCGG
GTTGATAGCCGATCGAGGAGTCAGCAATACCCAATGGAAAGACACCCTGA
CCCGGAGCAGGGTCACGGGGCACTTGAACCAGGGAGCAGTGGACGAAGTG
CAACCCTTGCTAGTGCTGAGGTTGACAGTGCAGCATCCTGTGGACAAAAG
CGAGCGCGAGGTCGGATGAGAGTAACCCTTCTTGTCAATGTTTGGCTATC
CCACAAGCCGCTCGAAATAGCACCGCTACCGCAAGCAATCGCCGCGATGC
TTAGCAGAGCTCCGGATCTCCCTGTACTGAACTTTGACCACCCGGTCATG
TTTTCTCCAGTGAGGTTACCAGTCAACGATGCAGTGAGCAATGGTGACGA
TAGTGATCGTGGGGTTGCGTTGACGGCAACTGTGGCAGTGAAGATGGCAT
TGGGCACTGCAACGTTCCTCGAAATGTGTGTGCCACGGAGCGAGACAATG
TCAGAAGGGAAAAGGAGAGGTCTTCACGCGTTTCTTTTGCAACTTGAAGA
CGGGTTTCGTGCACGTATTTCAGGTGTTGGCAGGAATAGTAGTTGTGGCA
GTCAAGTGCGGAGAGATGCGGATCTTATATCATGCCCGGCCCAGGGATTC
GATGAAAATAGAGCTTGCCTGGAAGAGCAAGTCGGCTTTCTTGCAGAGGA
GCATCACGACCATCTCGGATCGAACCGCCGCTGGGAAGGCCTTACAGTAG
ACATGACGGCTAACGGGGCGCGAGAGAAACAGGACGACACCGCCAAAAGA
AAACGGGATATTACATGACGAGCGCGAGGTCGGATGAGAGTAACCCTTCT
TGTCAATGTTTGGCTATCCCACAAGCCGCTCGAAATAGCACCGCTACCGC
AAGCAATCGCCGCGATGCTTAGCAGAGCTCCGGATCTCCCTGTACTGAAC
TTTGACCACCCGGTCATGTTTTCTCCAGTGAGGTTACCAGTCAACGATGC
AGTGAGCAATGGTGACGATAGTGATCGTGGGGTTGCGTTGACGGCAACTG
TGGCAGTGAAGATGGCATTGGGCACTGCAACGTTCCTCGAAATGTGTGTG
CCACGGAGCGAGACAATGTCAGAAGGGAAAAGGAGAGGTCTTCACGCGTT
TCTTTTGCAACTTGAAGACGGGTTTCGTGCACGTATTTCAGGTGTTGGCA
GGAATAGTAGTTGTGGCAGTCAAGTGCGGAGAGATGCGGATCTTATATCA
TGCCCGGCCCAGGGATTCGATGAAAATAGAGCTTGCCTGGAAGAGCAAGT
CGGCTTTCTTGCAGAGGAGCATCACGACCATCTCGGATCGAACCGCCGCT
GGGAAGGCCTTACAGTAGACATGACGGCTAACGGGGCGCGAGAGAAACAG
GACGACACCGCCAAAAGAAAACGGGATATTACATGA
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