mRNA_H-paniculata_contig1721.4017.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1721.4017.1
Unique NamemRNA_H-paniculata_contig1721.4017.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1721.4017.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1721contigH-paniculata_contig1721:3239..4036 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size798
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1721.4017.1prot_H-paniculata_contig1721.4017.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1721 3338..3793 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.587844-UTR-H-paniculata_contig1721:3238..33371622929357.587844-UTR-H-paniculata_contig1721:3238..3337Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 3239..3337 +
1691480828.873019-UTR-H-paniculata_contig1721:3238..33371691480828.873019-UTR-H-paniculata_contig1721:3238..3337Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 3239..3337 +
1622929357.622414-UTR-H-paniculata_contig1721:3793..40361622929357.622414-UTR-H-paniculata_contig1721:3793..4036Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 3794..4036 +
1691480828.8947322-UTR-H-paniculata_contig1721:3793..40361691480828.8947322-UTR-H-paniculata_contig1721:3793..4036Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig1721 3794..4036 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.6021578-CDS-H-paniculata_contig1721:3337..37931622929357.6021578-CDS-H-paniculata_contig1721:3337..3793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 3338..3793 +
1691480828.885382-CDS-H-paniculata_contig1721:3337..37931691480828.885382-CDS-H-paniculata_contig1721:3337..3793Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1721 3338..3793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1721.4017.1

>prot_H-paniculata_contig1721.4017.1 ID=prot_H-paniculata_contig1721.4017.1|Name=mRNA_H-paniculata_contig1721.4017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=152bp
MFHGHRLIACFPTQCLNSCLPTVPRCNAKSWPYLWRSSLLSPWFPSTLRI
LAPTQGLAALPSTRRHRTTPPTRNTVVMVSSKATKVPYLTVKGCTTSAFN
PQENDRCGIPLPILSLAQWEESPASPEVADTRSSCTPDAVTTKPVDFWPS
I*
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mRNA from alignment at H-paniculata_contig1721:3239..4036+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1721.4017.1 ID=mRNA_H-paniculata_contig1721.4017.1|Name=mRNA_H-paniculata_contig1721.4017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=798bp|location=Sequence derived from alignment at H-paniculata_contig1721:3239..4036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGCTTGTCTCTACCGATACACGGCCCTATAAATTGCACATCGTCCGTCGG
ATAGCACACCTAACCAGAACCCGCGGGAAACAACTCACCACCTTGACGGA
TGTTTCACGGTCATAGATTAATCGCGTGTTTCCCAACTCAGTGCCTCAAT
TCCTGTCTTCCCACGGTACCTCGCTGCAATGCTAAATCATGGCCCTATTT
GTGGAGGTCGTCACTACTGTCGCCTTGGTTTCCTTCTACTCTACGAATTT
TAGCCCCAACACAGGGGCTGGCCGCTCTACCGAGCACGCGGCGGCATCGA
ACCACCCCACCAACACGCAACACCGTTGTCATGGTCTCTAGCAAAGCCAC
CAAGGTTCCGTACTTGACAGTCAAGGGCTGCACTACATCTGCTTTCAATC
CACAAGAAAACGATAGATGCGGTATTCCTTTGCCGATTCTCTCGCTAGCA
CAGTGGGAGGAGAGTCCAGCTTCGCCAGAAGTTGCTGACACCAGGTCGTC
ATGTACCCCCGATGCCGTTACCACCAAACCCGTGGACTTCTGGCCTTCAA
TATAATGCAGCCGATCCAGGATATGGCGAAATTGAAAGCGACAACGCCCA
CCCGTTGCCGTTCCACCGCCTGGCGAACGATTTCGGCCGCCGGAGGCTGT
AGAATGGCTGCCCGTGGCAAAGGTATTCTCGAGCAAGGTGTCGGGGAGTA
CGGACATCGCGGCTGCTAGGACTGAGAACGCAGCTGAAATACTCCAGTCC
CCGGCACTGCCACCCGCCTGGCTGCTACAATCCACGTCAGCGTTCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig1721:3239..4036+

>mRNA_H-paniculata_contig1721.4017.1 ID=mRNA_H-paniculata_contig1721.4017.1|Name=mRNA_H-paniculata_contig1721.4017.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=912bp|location=Sequence derived from alignment at H-paniculata_contig1721:3239..4036+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCACGGTCATAGATTAATCGCGTGTTTCCCAACTCAGTGCCTCAA
TTCCTGTCTTCCCACGGTACCTCGCTGCAATGCTAAATCATGGCCCTATT
TGTGGAGGTCGTCACTACTGTCGCCTTGGTTTCCTTCTACTCTACGAATT
TTAGCCCCAACACAGGGGCTGGCCGCTCTACCGAGCACGCGGCGGCATCG
AACCACCCCACCAACACGCAACACCGTTGTCATGGTCTCTAGCAAAGCCA
CCAAGGTTCCGTACTTGACAGTCAAGGGCTGCACTACATCTGCTTTCAAT
CCACAAGAAAACGATAGATGCGGTATTCCTTTGCCGATTCTCTCGCTAGC
ACAGTGGGAGGAGAGTCCAGCTTCGCCAGAAGTTGCTGACACCAGGTCGT
CATGTACCCCCGATGCCGTTACCACCAAACCCGTGGACTTCTGGCCTTCA
ATATAAATGTTTCACGGTCATAGATTAATCGCGTGTTTCCCAACTCAGTG
CCTCAATTCCTGTCTTCCCACGGTACCTCGCTGCAATGCTAAATCATGGC
CCTATTTGTGGAGGTCGTCACTACTGTCGCCTTGGTTTCCTTCTACTCTA
CGAATTTTAGCCCCAACACAGGGGCTGGCCGCTCTACCGAGCACGCGGCG
GCATCGAACCACCCCACCAACACGCAACACCGTTGTCATGGTCTCTAGCA
AAGCCACCAAGGTTCCGTACTTGACAGTCAAGGGCTGCACTACATCTGCT
TTCAATCCACAAGAAAACGATAGATGCGGTATTCCTTTGCCGATTCTCTC
GCTAGCACAGTGGGAGGAGAGTCCAGCTTCGCCAGAAGTTGCTGACACCA
GGTCGTCATGTACCCCCGATGCCGTTACCACCAAACCCGTGGACTTCTGG
CCTTCAATATAA
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