mRNA_H-paniculata_contig17202.4014.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig17202.4014.1
Unique NamemRNA_H-paniculata_contig17202.4014.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 230 bits (586), Expect = 8.480e-67
Identity = 140/373 (37.53%), Postives = 197/373 (52.82%), Query Frame = 3
Query:   33 LWMLENILEHPQPAEEHAFFDAGCPTNRLNLLAHQQLQATMSTDSGRLGYASTWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CY-GVEG--VATRHACICHRAGA*ADQYQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            +W+LE  +       E  FF   C  +R  L  +QQ QA +ST +G LG      R +SA++G++ G L   IA   GPLGE VR  +P T +V  +G  ++ L +  G+S E    +LP   V WA     E G    P +  L +HD      R+    +G  ++K ++   +  L+ LP    PP   +P+GG E+ + A AR  S  G G     RA   D AR +P  E+V   RR L +E + A R P C+ G EG  + T HA  C R GA  + ++PL + ++R L  L  +  VE+G PFT +R+  MDIV+ PG L +A    YR KG+L+DVTHA+PQ+  H+  GS T DG AA   EARK
Sbjct:    3 MWVLEATMGLRDTEVEEEFFQDDCQPDRFKLRPYQQAQARLSTGAGELGLPEAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHTFLRAAATDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCQRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARK 374          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5KTK7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK7_9PHAE)

HSP 1 Score: 222 bits (565), Expect = 5.440e-65
Identity = 139/373 (37.27%), Postives = 196/373 (52.55%), Query Frame = 3
Query:   33 LWMLENILEHPQPAEEHAFFDAGCPTNRLNLLAHQQLQATMSTDSGRLGYASTWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CYGV---EGVATRHACICHRAGA*ADQYQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            +W+LE  +       E  FF   C  +R  L  +QQ QA +ST +G LG  +   R +SA++G++ G L   IA   GPLGE VR  +P T +V  +G  ++ L +  GVS E    +LP   V WA     E G    P +  L +HD      R+    +G  V K ++   +  L+ +P    PP   +P+GG E+ + A AR  S  G G  A  RA P D AR +P  E+V   RR L +E + A R P C+     E + T HA  C R G   + ++P  + ++R L  L  +  VE+G PFT +R+  MDIV+ PG L +A    YR KG+L+DVTHA+PQ+  H+  GS T DG+AA   EARK
Sbjct:    3 MWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQSQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAV-KIQLEKFMESLEHVPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREREIITTVHARTCPRDGEQVNMHEPSKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGTAAEASEARK 373          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 234 bits (598), Expect = 1.360e-64
Identity = 144/382 (37.70%), Postives = 202/382 (52.88%), Query Frame = 3
Query:    6 ACTLTDNGGLWMLENILEHPQPAEEHAFFDAGCPTNRLNLLAHQQLQATMSTDSGRLGYASTWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CY-GVEG--VATRHACICHRAGA*ADQYQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            AC   DN  +W+LE  +       E  FF   C  +R  L  +QQ QA +ST +G LG  +   R +SA++G++   L   IA   GPLGE VR  +P T +V  +G  ++ L +  G+S E    +LP   V WA     E G    P +  L +HD      R+    +G  ++K ++   +  L+ LP    PP   +P+GG E+ + A AR  S  G G  A  RA P D AR +P  E+V   RR L IE + A R P C+ G EG  + T HA  C R GA  + ++PL + ++R L  L  +  VE+G PFT +R+  MDIV+ PG L +A    YR KG+L+DVTHA+PQ+  H+  GS T DG+     EARK
Sbjct:  741 ACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVDTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGIEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGTEIQASEARK 1121          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 2.530e-64
Identity = 143/382 (37.43%), Postives = 203/382 (53.14%), Query Frame = 3
Query:    6 ACTLTDNGGLWMLENILEHPQPAEEHAFFDAGCPTNRLNLLAHQQLQATMSTDSGRLGYASTWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CY-GVEG--VATRHACICHRAGA*ADQYQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            AC L DN  +W+LE  +       E  FF      +R  +  +QQ QA +ST +G LG  +   R +SA++G++ G L   IA   GPLGE VR  +P T +V  +G  ++ L +   +S E    +LP   V WA     E G    P +  L +HD      R+    +G  ++K ++   +  L+ LP    PP   +P+GG E+ + A AR  S  G G  A  RA P D AR +P  E+V   RR L +E + A + P C+ G EG  + T HA  C R GA  + ++PL + ++R L  L  +  VE+G PFT +R+  MDIV+ PG L +A    YR KG+L+DVTHA+PQ+  H+  GS T DG AA   EARK
Sbjct:  698 ACELLDNMVMWVLEATMGLRDTEVEEEFFQDDYQPDRFKIKTYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPAGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAEKCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRKKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARK 1078          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5LLI3_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLI3_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 6.850e-62
Identity = 138/358 (38.55%), Postives = 192/358 (53.63%), Query Frame = 3
Query:   78 EHAFFDAGCPTNRLNLLAHQQLQATMSTDSGRLGYASTWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CY-GVEG--VATRHACICHRAGA*ADQYQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            E  FF   C  +R  L  +QQ QA +ST +G LG  +   R +SA++G++ G L   IA    PLGE VR  +P T +V  +G  ++ L +  GVS E    +LP   V WA     E G    P +  L +HD      R+    +G  ++K ++   +  L+ LP    PP   +P+GG E+ + A AR  S  G G  A+ RA P D AR +   E+    RR L IE + A R P C+ G EG  + T HA  C R GA  + ++PL + ++R L  L  +  VE+G PFT +R+  MDIV+ PG L +A    YR KG+L+DVTHA+PQ+  H+  GS T DG AA   EARK
Sbjct:    9 EEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALLVPLGELVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPLWVEWALQPPGETGRRQ-PTVAELAAHDGEYTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHALLRAAPTDRAREIQSNEFGYATRRALEIEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARK 365          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 219 bits (558), Expect = 5.510e-61
Identity = 134/365 (36.71%), Postives = 192/365 (52.60%), Query Frame = 3
Query:    6 ACTLTDNGGLWMLENILEHPQPAEEHAFFDAGCPTNRLNLLAHQQLQATMSTDSGRLGYASTWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CY-GVEG--VATRHACICHRAGA*ADQYQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIER 1088
            AC   DN  +W+LE  +       E  FF   C  +R  L  +QQ QA +ST +G LG  +   R +SA++G++ G L   IA   GPLGE VR  +P T +V  +G  ++ L +   +S E    ++P   V WA     E G    P +  L +HD      R+    +G  ++K ++   +  L+ LP    PP   +P+GG E+ + A AR  S  G G  A  RA P D AR +P  E+V   RR L +E + A R P C+ G EG  + T HA  C R GA  + ++PL + ++R L  L  +  VE+G PFT +R+  MDIV+ PG L +A    YR KG+L+DVTHA+PQ+   I R
Sbjct:  287 ACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGIIPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVAISR 650          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 205 bits (521), Expect = 1.020e-54
Identity = 141/417 (33.81%), Postives = 201/417 (48.20%), Query Frame = 3
Query:    6 ACTLTDNGGLWMLENILEHPQPAEEHAFFDAGCPTNRLNLLAHQQL--------QATMSTDSGRLGYASTWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CY-GVEG--VATRHACICHRAGA*ADQYQPLL---------------------------HTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            AC   DN  +W+LE  +      +E  FF   C  +R   LA   +        QA +S  +G LG  +   R +SA++G++ G L   IA   GPLGE VR  +P T +V  +G  ++ L +   +S E    +LP   V WA     E G    P +  L +HD      R+    +G  ++  ++  L+  L  LP    PP   +P+GG E+ + A AR  S  G G  A  RA P D AR +P  E+V   RR L +E + A R P C+ G EG  + T  A  C R GA  + ++PL                            + ++R L  L  +  VE+G PFT +R+  MDIV+ PG L +A    YR KG+L+DVT+A+PQ+  H+  GS T DG+AA   EARK
Sbjct:  380 ACERLDNMVMWVLEATMGLRDAEDEEEFFQDDCQPDRFKRLAGALVPADAPPAAQARLSAGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINDIQLEKLMESLKHLPQEAVPPTRDNPYGGQEARNMAYARTRSSKGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHKGREGQIITTVQARTCSRDGAQVNMHEPLKXXXXXXXXXXXXXXXXXXXXXXXXXXKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTNADPQAQVHLRNGSATSDGTAAQASEARK 795          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.820e-48
Identity = 127/362 (35.08%), Postives = 178/362 (49.17%), Query Frame = 3
Query:   75 EEHAFFDAGCPTNRLNLLAHQQLQATMSTDSGRLGYASTWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRG---LAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CY-GVEG--VATRHACICHRAGA*ADQYQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            +E  FF   C  +R  L  +QQ QA +ST +G LG  +   R +SA++G++ G L                                     L    GVS +    +LP   V WA     E G    P +  L ++D      R+    +G  V+K ++  L+  L  LP    PP S +P+GG E+ + A AR  S  G G  A  RA P D AR +P  E+V   RR L +E + A R P C+ G EG  + T HA  C R GA  + ++PL + ++R L  L  +  VE+G PFT +R+  MD+V+ PG L +A    YR KG+L+DVTHA+PQ+  H+  GS T DG+AA   EARK
Sbjct:  392 DEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLFAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNREHGVSVKILKGILPPSWVEWAFEPPGETGRRQ-PTVAELAAYDGESTTPRKAQHKLGKAVNKIQLEKLIESLGHLPQEAVPPTSDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCPRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDLVIRPGALTNASSPGYRNKGVLLDVTHADPQAQVHLRNGSATSDGTAAQASEARK 752          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 165 bits (417), Expect = 4.350e-43
Identity = 105/277 (37.91%), Postives = 147/277 (53.07%), Query Frame = 3
Query:  321 LGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSP-CY-GVEG--VATRHACICHRAGA*ADQYQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            +G  ++ L +  GVS E    +LP   V WA     E      P +  L +HD      R+    +G  V K ++   +  L+ LP    P    +P+GG E+ + A AR  S  G G  A  +A P + AR +PL E+V   RR L +E + A R P C+ G EG  + T HA  C R GA  + ++PL + ++R L  L  +  VE+G PFT +R+  MDIV+ PG L +A    YR KG+L+DVTHA+PQ+  H+  GS T DG AA   EARK
Sbjct:    1 MGDAIKELNQEHGVSVEILKGILPPSWVEWALEPAGET-RRRQPTVAELAAHDEESTTPRKAQHKLGKAVSKIQLEKFMESLEHLPQEAVPHTRDNPYGGQEARNMAYARTRSSQGQGEHAFLKAAPTERAREIPLNEFVYATRRALGVEEFLAERCPRCHRGREGEIITTVHARTCRRDGAQVNMHEPLKYALSRALNGLRVKHDVESGAPFTGERNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARK 276          
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Match: A0A6H5JS53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS53_9PHAE)

HSP 1 Score: 164 bits (415), Expect = 2.480e-42
Identity = 113/313 (36.10%), Postives = 153/313 (48.88%), Query Frame = 3
Query:  210 AAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLRGLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPGRNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADAAKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAARSPCYGVEGVATRHACICHRAGA*ADQ---YQPLLHTVTRLLQRLGSRSTVENGDPFTADRDYQMDIVVPPGEL*DAPINAYRFKGLLIDVTHANPQSAGHIERGSTTIDGSAAAMPEARK 1139
            +++G++ G L   IA   G LGE VR  +P   +V  +G  ++ L +  GVS E    +LP   V WA     E G    P +  L +HD      R+    +G  ++K ++   +  L+ LP    PP   +P+GG E+ + A AR  S  G G  A  RA P D AR +P  E+V   RR L +E      S       V  R     H  GA  D    +    H   R L  LG +  VE+G PFT  R+  MDIV+ PG L +A    YR KG+L+DVTHA+PQ+  H+  GS T DG AA   EARK
Sbjct:   25 SSLGNLVGTLPAVIAALRGSLGESVRVRIPGKVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPPGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEGLGGKMSQ------VPQRQGRRDHHNGARKDLSKGWSTGQHA--RALNGLGVKHDVESGAPFTGARNLSMDIVIRPGALTNASSPGYRNKGILLDVTHADPQAQVHLRNGSATSDGIAAQASEARK 328          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17202.4014.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
A0A6H5JQ53_9PHAE8.480e-6737.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTK7_9PHAE5.440e-6537.27Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KMQ2_9PHAE1.360e-6437.70Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K195_9PHAE2.530e-6437.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LLI3_9PHAE6.850e-6238.55Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUZ8_9PHAE5.510e-6136.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLG6_9PHAE1.020e-5433.81Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JTC7_9PHAE1.820e-4835.08Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDZ4_9PHAE4.350e-4337.91Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS53_9PHAE2.480e-4236.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig17202contigH-paniculata_contig17202:11..1301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1291
Cds size819
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig17202.4014.1prot_H-paniculata_contig17202.4014.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig17202 49..867 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.3192198-UTR-H-paniculata_contig17202:10..481622929357.3192198-UTR-H-paniculata_contig17202:10..48Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17202 11..48 +
1691480828.7398036-UTR-H-paniculata_contig17202:10..481691480828.7398036-UTR-H-paniculata_contig17202:10..48Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17202 11..48 +
1622929357.3489623-UTR-H-paniculata_contig17202:867..13011622929357.3489623-UTR-H-paniculata_contig17202:867..1301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17202 868..1301 +
1691480828.7684667-UTR-H-paniculata_contig17202:867..13011691480828.7684667-UTR-H-paniculata_contig17202:867..1301Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig17202 868..1301 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.3331048-CDS-H-paniculata_contig17202:48..8671622929357.3331048-CDS-H-paniculata_contig17202:48..867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17202 49..867 +
1691480828.7510912-CDS-H-paniculata_contig17202:48..8671691480828.7510912-CDS-H-paniculata_contig17202:48..867Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig17202 49..867 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig17202.4014.1

>prot_H-paniculata_contig17202.4014.1 ID=prot_H-paniculata_contig17202.4014.1|Name=mRNA_H-paniculata_contig17202.4014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=273bp
MLENILEHPQPAEEHAFFDAGCPTNRLNLLAHQQLQATMSTDSGRLGYAS
TWSRHWSAAVGSMCGMLSQTIADSSGPLGERVRAHLPRTRMVRSLGATLR
GLAEWGGVSAEQQAAVLPSGLVTWAHGGWSEDGSLPTPNIGVLGSHDAPG
RNSRRLHGNVGNLVHKAKVTTLLSLLDSLPPAVRPPGSRDPFGGIESADA
AKARFCSMPGAGALAMQRAQPYDNARTVPLAEYVLMERRFLAIEPYPAAR
SPCYGVEGVATRHACICHRAGA*
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mRNA from alignment at H-paniculata_contig17202:11..1301+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig17202.4014.1 ID=mRNA_H-paniculata_contig17202.4014.1|Name=mRNA_H-paniculata_contig17202.4014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1291bp|location=Sequence derived from alignment at H-paniculata_contig17202:11..1301+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCAAGCCTGCACACTAACCGACAATGGCGGACTGTGGATGTTGGAGAAC ATCCTGGAACACCCGCAACCAGCAGAAGAACACGCCTTCTTCGACGCCGG CTGCCCGACGAACCGCCTCAACCTCCTGGCCCATCAGCAACTCCAGGCCA CCATGTCGACCGATTCAGGGAGGTTGGGGTACGCCTCGACATGGAGCAGA CACTGGTCAGCAGCGGTGGGGAGTATGTGCGGCATGCTGTCGCAGACAAT CGCGGACTCGTCGGGACCGTTGGGGGAGCGGGTGCGGGCACATCTTCCCA GGACACGGATGGTGCGCTCATTGGGAGCGACTCTCCGTGGTTTGGCAGAA TGGGGAGGAGTTAGCGCCGAGCAGCAAGCTGCGGTGCTGCCGTCCGGGCT GGTCACGTGGGCCCACGGAGGATGGAGCGAAGATGGATCACTGCCTACAC CGAACATCGGCGTTCTAGGAAGTCACGACGCGCCAGGGAGGAACTCCCGT CGGCTGCACGGGAACGTCGGCAATCTGGTCCACAAGGCCAAGGTAACGAC CTTGCTCTCGCTGCTTGACAGCCTACCCCCGGCCGTTAGGCCACCTGGCT CTCGTGACCCGTTCGGAGGAATCGAGTCGGCCGACGCGGCTAAAGCGAGA TTTTGCAGCATGCCGGGGGCTGGAGCTCTGGCGATGCAACGGGCACAGCC CTACGACAACGCTAGGACTGTACCTCTAGCAGAGTACGTGCTCATGGAAC GGAGGTTTCTTGCCATCGAGCCCTACCCAGCCGCTCGATCCCCATGTTAC GGAGTGGAGGGCGTCGCCACGCGCCACGCCTGCATCTGCCATCGAGCGGG GGCATAGGCAGACCAATACCAGCCGCTTCTACACACGGTCACGCGACTGC TTCAGCGACTGGGCAGCAGGAGCACGGTCGAGAACGGAGACCCCTTTACG GCGGACCGAGACTACCAGATGGACATAGTCGTCCCGCCAGGAGAGCTCTG AGATGCTCCCATTAATGCCTACCGCTTCAAGGGTCTCCTGATCGACGTCA CGCACGCAAATCCCCAGTCGGCAGGGCATATCGAGCGTGGGAGCACTACC ATCGACGGCTCGGCCGCCGCCATGCCTGAGGCGCGCAAAGCTTCGAGCTG ACTACGCTGTGCGAGGTCTGCGCGTCTTCACGATTGCACTCTGATTGTGC GGTTACACTCCCTAATTGAATCCCCCTAATATACTGTTTATGGAGCATCG TATCCAAAACTAGTTCATGAGACAACGGATCAAAACAAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig17202:11..1301+

>mRNA_H-paniculata_contig17202.4014.1 ID=mRNA_H-paniculata_contig17202.4014.1|Name=mRNA_H-paniculata_contig17202.4014.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at H-paniculata_contig17202:11..1301+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTGGAGAACATCCTGGAACACCCGCAACCAGCAGAAGAACACGCCTT
CTTCGACGCCGGCTGCCCGACGAACCGCCTCAACCTCCTGGCCCATCAGC
AACTCCAGGCCACCATGTCGACCGATTCAGGGAGGTTGGGGTACGCCTCG
ACATGGAGCAGACACTGGTCAGCAGCGGTGGGGAGTATGTGCGGCATGCT
GTCGCAGACAATCGCGGACTCGTCGGGACCGTTGGGGGAGCGGGTGCGGG
CACATCTTCCCAGGACACGGATGGTGCGCTCATTGGGAGCGACTCTCCGT
GGTTTGGCAGAATGGGGAGGAGTTAGCGCCGAGCAGCAAGCTGCGGTGCT
GCCGTCCGGGCTGGTCACGTGGGCCCACGGAGGATGGAGCGAAGATGGAT
CACTGCCTACACCGAACATCGGCGTTCTAGGAAGTCACGACGCGCCAGGG
AGGAACTCCCGTCGGCTGCACGGGAACGTCGGCAATCTGGTCCACAAGGC
CAAGGTAACGACCTTGCTCTCGCTGCTTGACAGCCTACCCCCGGCCGTTA
GGCCACCTGGCTCTCGTGACCCGTTCGGAGGAATCGAGTCGGCCGACGCG
GCTAAAGCGAGATTTTGCAGCATGCCGGGGGCTGGAGCTCTGGCGATGCA
ACGGGCACAGCCCTACGACAACGCTAGGACTGTACCTCTAGCAGAGTACG
TGCTCATGGAACGGAGGTTTCTTGCCATCGAGCCCTACCCAGCCGCTCGA
TCCCCATGTTACGGAGTGGAGGGCGTCGCCACGCGCCACGCCTGCATCTG
CCATCGAGCGGGGGCATAGATGTTGGAGAACATCCTGGAACACCCGCAAC
CAGCAGAAGAACACGCCTTCTTCGACGCCGGCTGCCCGACGAACCGCCTC
AACCTCCTGGCCCATCAGCAACTCCAGGCCACCATGTCGACCGATTCAGG
GAGGTTGGGGTACGCCTCGACATGGAGCAGACACTGGTCAGCAGCGGTGG
GGAGTATGTGCGGCATGCTGTCGCAGACAATCGCGGACTCGTCGGGACCG
TTGGGGGAGCGGGTGCGGGCACATCTTCCCAGGACACGGATGGTGCGCTC
ATTGGGAGCGACTCTCCGTGGTTTGGCAGAATGGGGAGGAGTTAGCGCCG
AGCAGCAAGCTGCGGTGCTGCCGTCCGGGCTGGTCACGTGGGCCCACGGA
GGATGGAGCGAAGATGGATCACTGCCTACACCGAACATCGGCGTTCTAGG
AAGTCACGACGCGCCAGGGAGGAACTCCCGTCGGCTGCACGGGAACGTCG
GCAATCTGGTCCACAAGGCCAAGGTAACGACCTTGCTCTCGCTGCTTGAC
AGCCTACCCCCGGCCGTTAGGCCACCTGGCTCTCGTGACCCGTTCGGAGG
AATCGAGTCGGCCGACGCGGCTAAAGCGAGATTTTGCAGCATGCCGGGGG
CTGGAGCTCTGGCGATGCAACGGGCACAGCCCTACGACAACGCTAGGACT
GTACCTCTAGCAGAGTACGTGCTCATGGAACGGAGGTTTCTTGCCATCGA
GCCCTACCCAGCCGCTCGATCCCCATGTTACGGAGTGGAGGGCGTCGCCA
CGCGCCACGCCTGCATCTGCCATCGAGCGGGGGCATAG
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